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2024-05-11gnu: Add python-libensemble.Vinicius Monego
* gnu/packages/maths.scm (python-libensemble): New variable. Change-Id: I45d4ba209af746f22f3f6c74a01063726478de0f
2024-05-06gnu: wxmaxima: Update to 24.02.2.Andy Tai
* gnu/packages/maths.scm (wxmaxima): Update to 24.02.2. Change-Id: I33cd6a3230a7d1672aadf942ad0b089dfa8603b0 Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2024-05-01gnu: scilab: Improve package management robustness in scilab-cli.Nicolas Graves
* gnu/packages/maths.scm (scilab)[source]<origin>: Improve package management robustness in scilab-cli by allowing tbx_build_help to log the scilab mode incompatibility error and not process the rest of the function instead of failing with it. * gnu/packages/patches/scilab-tbx_build_help.patch : Add patch. * gnu/local.mk(dist_patch_DATA): Add gnu/packages/patches/scilab-tbx_build_help.patch. Change-Id: I8ee94afb4aba906cbc8c7ca67f4c89aa0cf55ae6 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-05-01gnu: scilab: Fixup and improve compilerDetection.sh script.Nicolas Graves
* gnu/packages/maths.scm (scilab) [arguments]<#:phases>: Fix compilerDetection.sh script in phase bootstrap-dynamic_link-scripts. [source]<origin>(patches): Add scilab-better-compiler-detection.patch. * gnu/packages/patches/scilab-better-compiler-detection.patch: Add file. * gnu/local.mk(dist_path_DATA): Add scilab-better-compiler-detection.patch. Change-Id: I7b1c78c4637fa1bc965eca8c516bf0b6cd4b92d1 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-05-01gnu: scilab: Cleanup.Nicolas Graves
* gnu/packages/maths.scm (scilab): [arguments]<#:phases>: In pre-build phase, remove unecessary code, due to the former introduction of the rewrap-scilab-cli phase. More robust version setting in the set-version phase. It anticipates for the next release which will not use "main" anymore. [source]<origin>(snippet) Sort dynamic_link deleted files. [inputs]: Add bash-minimal. Change-Id: I49b17886405e1ed8161e71b51655fa393ff7f10b Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-04-18gnu: armadillo: Enable LAPACK support.Guillaume Le Vaillant
* gnu/packages/maths.scm (armadillo)[arguments]: Add OPENBLAS_PROVIDES_LAPACK option to 'configure-flags'. Change-Id: I872520620c921d0ab1fef8f6e5812da12cee031b
2024-04-11gnu: superlu-dist: Fix linking with the ParMETIS shim of pt-scotch.Ludovic Courtès
* gnu/packages/maths.scm (superlu-dist)[arguments]: Adjust library names to match current ‘scotch’. Change-Id: If64094c058cc3be58435fe1c47cc99fb0a9e1fff
2024-04-11gnu: pt-scotch: Include <stdint.h> so ‘parmetis.h’ is usable.Ludovic Courtès
Fixes a bug when building ‘superlu-dist’ where ‘int32_t’ would be undefined. * gnu/packages/maths.scm (scotch)[source]: Add ‘snippet’. Change-Id: Id5beb2034d762727458821b93568e5b733184c00
2024-04-07gnu: octave-cli: Update to 9.1.0.Andy Tai
* gnu/packages/maths.scm (octave-cli): Update to 9.1.0. Change-Id: I8b8c3245644e0958d13d635f514d7fcc1d656a91 Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-04-04gnu: libflame: Switch to openblas.Romain GARBAGE
* gnu/packages/maths.scm (libflame): Switch input dependency from lapack to openblas. Change-Id: I7abdb8d126856488b0722b73c336309bf5c2234d Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-04-04gnu: python-cvxopt: Remove dependency on lapack.Romain GARBAGE
* gnu/packages/maths.scm (python-cvxopt): Remove dependency on lapack. Change-Id: I2a28ecf1ab5ea7683d6b8adf72054d3f86892771 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-04-04gnu: scilab: Remove dependency on lapack.Romain GARBAGE
* gnu/packages/maths.scm (scilab): Remove dependency on lapack. Change-Id: I5c825c9e6eee6f7fbde078c67d3208fcadf100b6 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-04-04gnu: bonmin: Switch to openblas.Romain GARBAGE
* gnu/packages/maths.scm (bonmin): Switch input dependency from lapack to openblas. Change-Id: I3f1ef50827873fdc1eddcd152a74ffbbbf02ee44 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-04-04gnu: superlu-dist: Remove dependency on lapack.Romain GARBAGE
* gnu/packages/maths.scm (superlu-dist): Remove dependency on lapack. Change-Id: I5893e16f7ef6fd688fd6b53eba6d3005b832f0ef Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-04-04gnu: elemental: Remove dependency on lapack.Romain GARBAGE
* gnu/packages/maths.scm (elemental): Remove dependency on lapack. Change-Id: Iad28ceb70b87a26de75feec631b40aeedf977b53 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-04-04gnu: dealii: Remove dependency on lapack.Romain GARBAGE
* gnu/packages/maths.scm (dealii): Remove dependency on lapack. Change-Id: I6f3439c886a574b8a8d2d91a4afa04ed09daba7f Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-04-04gnu: p4est: Remove dependency on lapack.Romain GARBAGE
* gnu/packages/maths.scm (p4est): Remove dependency on lapack. Change-Id: I9c76f8b9ba3fc7d5feabfb059505f66ac50972c3 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-04-04gnu: sundials-julia: Switch to openblas.Romain GARBAGE
* gnu/packages/maths.scm (sundials-julia): Switch input dependency from lapack to openblas. Change-Id: I7c5990b09f3a006600bab73ef998b081cbaa8935 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-04-04gnu: ceres: Remove dependency on lapack.Romain GARBAGE
* gnu/packages/maths.scm (ceres): Remove dependency to lapack. Change-Id: Iac55faf30a83bbbe3693cac73a9996af8ddcbde7 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-04-04gnu: ipopt: Switch to openblas.Romain GARBAGE
* gnu/packages/maths.scm (ipopt): Switch input dependency from lapack to openblas and add required configure flags. Change-Id: I58b84f0741a973adf81da1716e2e2659af1c50c4 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-04-04gnu: gmsh: Switch to openblas.Romain GARBAGE
* gnu/packages/maths.scm (gmsh): Switch input dependency from lapack to openblas. Change-Id: Ib04c07a51f3af65d259b9970073ec1f68603aed4 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-04-04gnu: itpp: Switch to openblas.Romain GARBAGE
* gnu/packages/maths.scm (itpp): Switch input dependency from lapack to openblas. Change-Id: I42606d5ed379093a076790d2b300dfa96f18d2ea Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-04-04gnu: hypre: Switch to openblas.Romain GARBAGE
* gnu/packages/maths.scm (hypre): Switch input dependency from lapack to openblas. Change-Id: I8bc2c3abf0d3ead52c9616e1a23bf4ac6113ac3b Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-04-04gnu: scalapack: Switch to openblas.Romain GARBAGE
* gnu/packages/maths.scm (scalapack): Switch input dependency from lapack to openblas. Change-Id: Ie025e6ced66c75755314b53989547ffe26fbcd11 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-04-04gnu: octave-cli: Switch to openblas.Romain GARBAGE
* gnu/packages/maths.scm (octave-cli): Switch input dependency from lapack to openblas. Change-Id: I3a624a44c1c9bc6be7360cfecbb61c955fa0d209 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-04-04gnu: armadillo: Switch to openblas.Romain GARBAGE
* gnu/packages/maths.scm (armadillo): Switch inputs from lapack to openblas. Change-Id: I718371f2e95fafc31e5dccddccbc223c111f594d Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-04-04gnu: arpack-ng: Switch to openblas.Romain GARBAGE
* gnu/packages/maths.scm (arpack-ng): Switch inputs from lapack to openblas. Change-Id: I0d825373f0f267cc97748a9c2c7de1d73698354e Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-03-20Merge remote-tracking branch 'savannah/master' into gnome-teamChristopher Baines
Change-Id: Iec8e15b79c6fde516294c2bfcaf8ee3575b1f745
2024-03-19gnu: combinatorial-blas: Skip failing tests.Romain GARBAGE
* gnu/packages/maths.scm (combinatorial-blas): Add new phase. Change-Id: Ifefb2b17e6758547d38290753a7cd338032a6abb Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-03-16Merge remote-tracking branch 'savannah/master' into gnome-teamChristopher Baines
Change-Id: I775274c2693536e2efa36c9abca4c54c5c458e26
2024-03-14gnu: combinatorial-blas: Update source hash.Christopher Baines
Diffoscope shows there are changes, but they don't look significant. * gnu/packages/maths.scm (combinatorial-blas): Update source hash. Change-Id: I32db6df0ef7c652572b1e874fe22175a4b66af6e
2024-03-12gnu: hypre: Honor the #:tests? flag.Lars Bilke
* gnu/packages/maths.scm (hypre)[arguments]: Adjust 'check phase to honor the #:tests? flag. Change-Id: I475fabd7d9f73ed320b97a4767830d82190c2b15 Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2024-03-12gnu: petsc: Add tunable property.Lars Bilke
Tested with some real-world simulations on multpiple HPC systems. * gnu/packages/maths.scm (petsc)[properties]: Add tunable? flag. Change-Id: I81588d0556c4176f29d7ab760322cd7aec271f12 Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2024-03-10Merge branch 'master' into gnome-teamLiliana Marie Prikler
2024-03-08gnu: nauty: Update to 2.8.8.Nicolas Goaziou
* gnu/packages/maths.scm (nauty): Update to 2.8.8. Change-Id: I741b398e7ab367a7c82ee8cc454f1790524b5db6
2024-03-04gnu: units: Update to 2.23.Andy Tai
* gnu/packages/maths.scm (units): Update to 2.23. Change-Id: Ia1b3df68c125631255cb3d28d2bf55d3148ee462 Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2024-03-02Merge branch 'master' into gnome-teamLiliana Marie Prikler
2024-02-27gnu: giza: Update to 1.4.1.Sharlatan Hellseher
* gnu/packages/maths.scm (giza): Update to 1.4.1. Change-Id: I7e6087e22cc6dea4a680fa45db155e42a724b50d
2024-02-27gnu: petsc: Reduce closure size.Lars Bilke
Reduces closure size from 828 MiB to 463 MiB (44%) by removing references to build dependencies such as GCC. * gnu/packages/maths.scm (petsc)[arguments]: Add ‘clear-reference-to-compiler’ phase. In ‘clean-install’ phase, also remove “configure-hash”. Change-Id: I2e6900747b2118546f0a39ceb109b3f2f90e6949 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-02-25Merge branch 'master' into gnome-teamLiliana Marie Prikler
2024-02-14gnu: arpack-ng: Update to 3.9.1.Andreas Enge
* gnu/packages/maths.scm (arpack-ng): Update to 3.9.1. Drop patch. * gnu/packages/patches/arpack-ng-propagate-rng-state.patch: Remove file. * gnu/packages/maths.scm (dist_patch_DATA): Unregister patch. Change-Id: I33a666c3a88fb2f6791c8d698eeb054a831103fc
2024-02-14gnu: arpack-ng: Add preprocessor flag.Romain GARBAGE
* gnu/packages/maths.scm (arpack-ng): Add configure flag for building ISO C binding headers. Change-Id: Iddfd67094ffafc3cabd88353e3839e5e903b804a Signed-off-by: Andreas Enge <andreas@enge.fr>
2024-02-13Merge branch 'master' into gnome-teamLiliana Marie Prikler
2024-02-08gnu: frama-c: Update to 27.1.Julien Lepiller
* gnu/packages/maths.scm (frama-c): Update to 27.1. (why3): Update to 1.6.0. Change-Id: I74191e4274d58a88a772413875fbf7de4d243fec
2024-02-03Merge branch 'master' into gnome-teamLiliana Marie Prikler
2024-01-16gnu: python-kiwisolver: Update to 1.4.5.Ricardo Wurmus
* gnu/packages/maths.scm (python-kiwisolver): Update to 1.4.5. [build-system]: Use pyproject-build-system. [propagated-inputs]: Add python-typing-extension. [native-inputs]: Add python-cppy, python-pytest, and python-setuptools-scm. Change-Id: Iea75440dc58fa342dcf4a2a381b6dcc17e71e618
2024-01-01Merge branch 'master' into gnome-teamLiliana Marie Prikler
2023-12-25gnu: scotch: Update to 7.0.4Romain GARBAGE
* gnu/packages/maths.scm (scotch): Update to version 7.0.4. Change-Id: I493113ecc1694e8812fb38d8e4641398eb174b34 Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2023-12-20Merge branch 'master' into gnome-teamLiliana Marie Prikler
2023-12-03Merge branch 'master' into HEADLiliana Marie Prikler
Change-Id: I3f5d121162d98ef2ae61a62c4da3b0fd19d864e8
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