Age | Commit message (Collapse) | Author |
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* gnu/packages/patches/atlas-gfortran-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/maths.scm (atlas)[source](patches): New field.
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Conflicts:
gnu/local.mk
gnu/packages/bioinformatics.scm
gnu/packages/django.scm
gnu/packages/gtk.scm
gnu/packages/llvm.scm
gnu/packages/python-web.scm
gnu/packages/python.scm
gnu/packages/tex.scm
guix/build-system/asdf.scm
guix/build/emacs-build-system.scm
guix/profiles.scm
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* gnu/packages/maths.scm (cglm): New public variable.
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* gnu/packages/maths.scm (libcerf): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/maths.scm (octave-cli, octave): Extended synopsis.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/maths.scm (xaos): Update to 4.2.1.
[arguments]: Patch call to "lrelease" in XaoS.pro.
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* gnu/packages/maths.scm (wxmaxima): Update to 21.04.0.
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Conflicts:
gnu/local.mk
gnu/packages/boost.scm
gnu/packages/chez.scm
gnu/packages/compression.scm
gnu/packages/crates-io.scm
gnu/packages/docbook.scm
gnu/packages/engineering.scm
gnu/packages/gcc.scm
gnu/packages/gl.scm
gnu/packages/gtk.scm
gnu/packages/nettle.scm
gnu/packages/python-check.scm
gnu/packages/python-xyz.scm
gnu/packages/radio.scm
gnu/packages/rust.scm
gnu/packages/sqlite.scm
guix/build-system/node.scm
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Add deprecated aliases for packages removed in the parent commit.
* gnu/packages/maths.scm (blis-sandybridge, blis-haswell, blis-knl): New
variables.
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* gnu/packages/maths.scm (make-blis): Remove internal function.
Inline into ...
(bliss): ... this variable. Update to 0.8.1.
[native-inputs]: Add "python" and "perl".
[arguments]: Adjust 'configure' phase to take advantage of new support
for "configuration families" with runtime hardware detection. Select
configuration automatically based on target systems, and allow
"--blis-config=" in #:configure-flags to override the default.
When building for x86_64, include all supported microarchetecture
specializations. Add "--enable-verbose-make" configure flag for better
build logs. Stop ignoring other flags from #:configure-flags.
Remove explicit #:substitutable? argument: the package is now always
substitutable. Add (srfi srfi-1) to #:modules.
(blis/x86_64): Remove internal macro.
(blis-sandybridge): Remove package: included in 'blis'.
(blis-haswell): Remove package: included in 'blis'.
(blis-knl): Remove package: included in 'blis'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/qt.scm (python-sip): Update to 5.5.0.
(python-sip-4): New variable. Rename the old python-sip to python-sip-4.
(python2-sip): Inherit from python-sip-4.
* gnu/packages/maths.scm (veusz)[native-inputs]: Use python-sip-4.
* gnu/packages/pdf.scm (python-poppler-qt5): Use python-sip-4.
* gnu/packages/geo.scm (qgis)[arguments]: Fix build for python-sip@5.
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* gnu/packages/maths.scm (scotch-shared, pt-scotch-shared): New variables.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/maths.scm (suitesparse): Update to 5.9.0.
[arguments]: Use cc-for-target instead of hard-coding gcc.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/maths.scm (metis)[properties]: New field.
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* gnu/packages/maths.scm (wxmaxima): Update to 21.02.0.
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* gnu/packages/maths.scm (octave): Update to 6.2.0.
[source]: Download tar.xz tarball.
[native-inputs]: Remove lzip.
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* gnu/packages/maths.scm (slepc)[home-page]: Use HTTPS URI.
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* gnu/packages/maths.scm (elpa)[home-page]: Use HTTPS URI.
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* gnu/packages/maths.scm (hdf5-1.12): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/maths.scm (wxmaxima): Update to 21.01.0.
[inputs]: Remove libomp.
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Fixes CVE-2018-14033, CVE-2018-11206, CVE-2018-13870, CVE-2018-13869, and
CVE-2018-17435
* gnu/packages/maths.scm (hdf5-1.8): Update to 1.8.22.
* gnu/packages/patches/hdf5-1.8-mpi-deprecations.patch: Delete upstreamed
patch.
* gnu/local/mk (dist_patch_DATA): Remove it.
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This change was automated using:
$ git ls-files | grep .scm | \
xargs sed 's/(getenv "PYTHONPATH")/(getenv "GUIX_PYTHONPATH")/' -i
$ git ls-files | grep .scm | \
xargs sed 's/`("PYTHONPATH"/`("GUIX_PYTHONPATH"/' -i
* gnu/packages/admin.scm (nmap):
(dstat): Wrap using GUIX_PYTHONPATH.
* gnu/packages/audio.scm (jack-2):
(carla): Likewise.
* gnu/packages/benchmark.scm (fio): Likewise.
* gnu/packages/bioinformatics.scm (couger): Likewise.
(gess, find-circ, filtlong, nanopolish): Likewise.
* gnu/packages/cdrom.scm (cdemu-client): Likewise.
* gnu/packages/chemistry.scm (avogadro): Likewise.
* gnu/packages/connman.scm (econnman): Likewise.
* gnu/packages/cups.scm (hplip): Likewise.
* gnu/packages/debug.scm (scanmem): Likewise.
* gnu/packages/display-managers.scm (lightdm): Likewise.
* gnu/packages/ebook.scm (cozy): Likewise.
* gnu/packages/education.scm (anki): Likewise.
* gnu/packages/engineering.scm (kicad, volk, freecad): Likewise.
* gnu/packages/game-development.scm (renpy): Likewise.
* gnu/packages/games.scm (roguebox-adventures)
(seahorse-adventures, kajongg): Likewise.
* gnu/packages/gimp.scm (gimp, glimpse): Likewise.
* gnu/packages/glib.scm (itstool): Likewise.
* gnu/packages/gnome.scm (gnome-music, gtg, rhythmbox): Likewise.
(eolie, d-feet, gedit, caribou, gnome-shell, authenticator)
(gnome-todo, orca, passwordsafe, terminator, setzer)
(libratbag, komikku): Likewise.
* gnu/packages/gps.scm (gpsd): Likewise.
* gnu/packages/gtk.scm (gtk-doc): Likewise.
* gnu/packages/ibus.scm (ibus, ibus-libpinyin, ibus-anthy)
(ibus-libhangul): Likewise.
* gnu/packages/inkscape.scm (inkscape-1.0): Likewise.
* gnu/packages/linux.scm (bcc): Likewise.
* gnu/packages/mail.scm (notifymuch): Likewise.
* gnu/packages/maths.scm (units): Likewise.
* gnu/packages/music.scm (solfege): Likewise.
* gnu/packages/networking.scm (blueman): Likewise.
* gnu/packages/patchutils.scm (patchwork): Likewise.
* gnu/packages/photo.scm (rapid-photo-downloader, entangle): Likewise.
* gnu/packages/plotutils.scm (asymptote): Likewise.
* gnu/packages/presentation.scm (presentty): Likewise.
* gnu/packages/screen.scm (byobu): Likewise.
* gnu/packages/storage.scm (ceph): Likewise.
* gnu/packages/syndication.scm (liferea): Likewise.
* gnu/packages/task-management.scm (blanket): Likewise.
* gnu/packages/text-editors.scm (manuskript): Likewise.
* gnu/packages/version-control.scm (gitless, cgit, git-when-merged)
(git-imerge): Likewise.
* gnu/packages/video.scm (pitivi): Likewise.
* gnu/packages/virtualization.scm (criu): Likewise.
* gnu/packages/xfce.scm (catfish): Likewise.
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* doc/build.scm (pdf-manual) Replace texlive-union by texlive-updmap.cfg.
* gnu/packages/algebra.scm (pari-gp): Likewise.
* gnu/packages/bioinformatics.scm (discrover, velvet): Likewise.
* gnu/packages/chez.scm (chez-scheme, chez-web, chez-sockets): Likewise.
* gnu/packages/docbook.scm (dblatex): Likewise.
* gnu/packages/emacs-xyz.scm (emacs-auctex): Likewise.
* gnu/packages/engineering.scm (fastcap): Likewise.
* gnu/packages/guile-xyz.scm (emacsy, guile-cv): Likewise.
* gnu/packages/lisp.scm (sbcl): Likewise.
* gnu/packages/maths.scm (octave, hypre): Likewise.
* gnu/packages/music.scm (lilypond): Likewise.
* gnu/packages/plotutils.scm (asymptote): Likewise.
* gnu/packages/python-xyz.scm (python-numpy-documentation)
(python-matplotlib-documentation, python-ipython-documentation)
(python-pypandoc): Likewise.
* gnu/packages/radio.scm (gnuradio, libosmo-dsp): Likewise.
* gnu/packages/scheme.scm (mit-scheme): Likewise.
* gnu/packages/statistics.scm (r-with-tests): Likewise.
* gnu/packages/tex.scm (simple-texlive-package)
(texlive-xmltex, texlive-tiny, texlive-jadetex, teximpatient, lyx): Likewise.
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* gnu/packages/maths.scm (wxmaxima): Update to 20.12.2.
[arguments]: Remove #:test-target and disable tests. Remove 'pre-check
phase.
[native-inputs]: Remove xorg-server-for-tests.
[inputs]: Add libomp.
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* gnu/packages/maths.scm (gnuplot): Update to 5.4.1.
[arguments]: Set GNUTERM in #:make-flags.
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Conflicts:
gnu/local.mk
gnu/packages/cmake.scm
gnu/packages/curl.scm
gnu/packages/gl.scm
gnu/packages/glib.scm
gnu/packages/guile.scm
gnu/packages/node.scm
gnu/packages/openldap.scm
gnu/packages/package-management.scm
gnu/packages/python-xyz.scm
gnu/packages/python.scm
gnu/packages/tls.scm
gnu/packages/vpn.scm
gnu/packages/xorg.scm
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* gnu/packages/maths.scm (suitesparse)[arguments]: Add to
configure-flags to install programs built with cmake to use 'lib', not
'lib64.'
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* gnu/packages/maths.scm (matio): Update to 1.5.19.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/maths.scm (openblas): Update to 0.3.13.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/maths.scm (hypre)[arguments]: Remove obsolete build phase
"set-HOME".
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* gnu/packages/maths.scm (octave, octave-cli): Update to 6.1.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/maths.scm (glpk)[arguments]: Add configure-flag to skip
static library.
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* gnu/packages/maths.scm (glpk): Update to 5.0.
(glpk-4.65): New variable.
* gnu/packages/algebra.scm (giac)[inputs]: Replace glpk with glpk-4.
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* gnu/packages/maths.scm (veusz): Update to 3.3.1.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
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* gnu/packages/maths.scm (sleef): Update to 3.5.1.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
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* gnu/packages/maths.scm (dealii): Update to 9.2.0.
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* gnu/packages/maths.scm (tiny-bignum): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
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* gnu/packages/maths.scm (superlu-dist): Update to 6.4.0
[source]: Use git-fetch, as tarballs are no longer published.
* gnu/packages/patches/superlu-dist-awpm-grid.patch: Remove all but the first
hunk; they are unnecessary.
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* gnu/packages/maths.scm (scotch): Update to 6.1.0.
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* gnu/packages/maths.scm (metamath): Update to 0.193.
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* gnu/packages/maths.scm (gsl)[arguments]: Add #:configure-flags.
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* gnu/packages/maths.scm (gsl)[arguments]: Move 'cond' within
'modify-phases'.
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* gnu/packages/maths.scm (z3): Update to 4.8.9.
(cherry picked from commit dc2de508a38d8e0a3f93e8d6ded225d3a7e32548)
Signed-off-by: Christopher Baines <mail@cbaines.net>
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* gnu/packages/maths.scm (units): Update to 2.21.
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* gnu/packages/maths.scm (z3): Update to 4.8.9.
Signed-off-by: Christopher Baines <mail@cbaines.net>
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