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2019-10-20gnu: vc: Update to 1.4.1.Marius Bakke
* gnu/packages/maths.scm (vc): Update to 1.4.1. [native-inputs]: Add VIRTEST and a test data origin. [arguments]: Add phase to copy test data.
2019-10-14gnu: mumps: Build and install shared libraries.Maurice Brémond
* gnu/packages/patches/mumps-shared-libseq.patch, gnu/packages/patches/mumps-shared-mumps.patch, gnu/packages/patches/mumps-shared-pord.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/maths.scm (mumps)[source](patches): Add them. [arguments]: In 'configure' phase, adjust "Makefile.inc" for shared library support. In 'install' phase, install libmpiseq.so when it exists. Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2019-10-14gnu: mumps: Update to 5.2.1.Maurice Brémond
* gnu/packages/maths.scm (mumps): Update to 5.2.1. Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2019-10-08gnu: mcrl2: Update source url.Jan Nieuwenhuizen
* gnu/packages/maths.scm (mcrl2): Update source url.
2019-10-08Merge branch 'core-updates'Ludovic Courtès
2019-10-08gnu: maxflow: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (maxflow)[home-page]: Use HTTPS.
2019-10-08gnu: maxflow: Correct version to 3.0.5.Tobias Geerinckx-Rice
This won't be picked up by ‘guix package -u’, but the code is identical anyway. By changing this now, fewer installations will fail to upgrade at all if upstream ever release a new <3.4. * gnu/packages/maths.scm (maxflow)[version]: Change to 3.0.5. [source]: Use version tag instead of raw matching commit.
2019-10-08gnu: maxflow: Use GIT-FILE-NAME.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (maxflow)[source]: Use GIT-FILE-NAME.
2019-10-01Merge branch 'master' into core-updatesLudovic Courtès
2019-09-30gnu: Add mcrl2-minimal.Jan Nieuwenhuizen
* gnu/packages/maths.scm (mcrl2-minimal): New variable.
2019-09-30gnu: mcrl2: Update to 201908.0.Jan Nieuwenhuizen
* gnu/packages/maths.scm (mcrl2): Update to 201908.0.
2019-09-28gnu: z3: Update to 4.8.6.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (z3): Update to 4.8.6.
2019-09-27gnu: dealii: Update to 9.1.1.Eric Bavier
* gnu/packages/maths.scm (dealii): Update to 9.1.1. [source]: Remove patch no longer needed. * gnu/local.mk (dist_patch_DATA): ditto. * gnu/packages/patches/dealii-mpi-deprecations.patch: Delete it.
2019-09-27Merge branch 'master' into core-updatesMarius Bakke
2019-09-24Merge branch 'master' into core-updatesLudovic Courtès
2019-09-24gnu: glm: Update to 0.9.9.6.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (glm): Update to 0.9.9.6. [source]: Add patch. * gnu/packages/patches/glm-restore-install-target.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2019-09-21gnu: wxmaxima: Update to 19.09.0.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (wxmaxima): Update to 19.09.0.
2019-09-20gnu: octave: Use texlive-union.Ricardo Wurmus
* gnu/packages/maths.scm (octave)[native-inputs]: Replace texlive with texlive-union containing texlive-epsf.
2019-09-17Merge branch 'master' into core-updatesLudovic Courtès
2019-09-13gnu: gmsh: Update home page.Paul Garlick
This addresses a 'guix lint' warning. * gnu/packages/maths.scm (gmsh)[home-page]: Update to avoid URL redirection.
2019-09-13gnu: openblas: Set 'NUM_THREADS'.Ludovic Courtès
Until now, OpenBLAS would use at most the N threads, where N is the number of cores that happened to be available on the build machine (typically N=8). * gnu/packages/maths.scm (openblas/fixed-num-threads): New variable. (openblas)[replacement]: New field. (openblas-ilp64): Use 'package/inherit'.
2019-09-12gnu: gmsh: Fetch source from Git.Paul Garlick
* gnu/packages/maths.scm (gmsh)[source]: Switch to GIT-FETCH.
2019-09-12gnu: hypre: Update texlive-union.Ricardo Wurmus
* gnu/packages/maths.scm (hypre)[native-inputs]: Replace texlive-generic-xypic and texlive-fonts-xypic with texlive-xypic; add texlive-cm to the texlive-union.
2019-09-06Merge branch 'master' into core-updatesMark H Weaver
2019-09-04gnu: hdf4: Update to 4.2.14.Marius Bakke
* gnu/packages/maths.scm (hdf4): Update to 4.2.14.
2019-09-03gnu: hdf-eos2: Add libtirpc input.Marius Bakke
* gnu/packages/maths.scm (hdf-eos2)[inputs]: Add LIBTIRPC.
2019-09-03gnu: hdf4: Build with libtirpc.Marius Bakke
* gnu/packages/patches/hdf4-tirpc.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/maths.scm (hdf4)[source](patches): Use it. [inputs]: Add LIBTIRPC. [arguments]: Adjust #:configure-flags accordingly.
2019-08-31gnu: Add speedcrunch.Steve Sprang
* gnu/packages/maths.scm (speedcrunch): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-08-29Merge branch 'master' into core-updatesMark H Weaver
2019-08-26gnu: python-cvxopt: Update to 1.2.3.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (python-cvxopt): Update to 1.2.3.
2019-08-22Merge branch 'master' into core-updatesMark H Weaver
2019-08-20gnu: wxmaxima: Update to 19.08.0.Kei Kebreau
* gnu/packages/maths.scm (wxmaxima): Update to 19.08.0.
2019-08-13Merge branch 'master' into core-updatesMarius Bakke
2019-08-08Merge branch 'master' into stagingMarius Bakke
2019-08-06gnu: r-desolve: Update to 1.24.Ricardo Wurmus
* gnu/packages/maths.scm (r-desolve): Update to 1.24.
2019-08-04gnu: double-conversion: Update to 3.1.5.Marius Bakke
* gnu/packages/maths.scm (double-conversion): Update to 3.1.5.
2019-07-17Merge branch 'master' into core-updatesLudovic Courtès
2019-07-16gnu: Add opencascade-occt.Paul Garlick
* gnu/packages/maths.scm (opencascade-occt): New variable.
2019-07-14gnu: Adjust uses of C{,PLUS}_INCLUDE_PATH for GCC 7.Marius Bakke
These variables are no longer set in the build environment by default. GCC still respects these search paths and treats them as "system headers" so we can continue to use them, just not expect them to be available. * gnu/packages/mpi.scm (openmpi)[arguments]: Do not attempt to read from C_INCLUDE_PATH, nor CPLUS_INCLUDE_PATH. * gnu/packages/games.scm (kiki)[arguments]: Likewise. * gnu/packages/networking.scm (hcxtools)[arguments]: Likewise. * gnu/packages/synergy.scm (synergy)[arguments]: Likewise. * gnu/packages/bioinformatics.scm (gemma, sailfish)[arguments]: Likewise. * gnu/packages/maths.scm (dune-alugrid)[arguments]: Likewise.
2019-07-02Merge branch 'staging' into core-updatesMarius Bakke
2019-07-02gnu: octave-cli: Sort inputs alphabetically.Efraim Flashner
* gnu/packages/maths.scm (octave-cli)[inputs]: Sort inputs alphabetically.
2019-06-28gnu: atlas: All phases return #t.Efraim Flashner
* gnu/packages/maths.scm (atlas)[arguments]: Ensure all custom phases return #t.
2019-06-27Merge branch 'master' into core-updatesLudovic Courtès
2019-06-21gnu: gnuplot: Update to 5.2.7.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (gnuplot): Update to 5.2.7.
2019-06-20Merge branch 'staging' into core-updatesMarius Bakke
2019-06-20gnu: Add ppl.Andreas Enge
* gnu/packages/maths.scm (ppl): New variable.
2019-06-20gnu: Move ratpoints into a different module.Nicolas Goaziou
* gnu/packages/maths.scm (ratpoints): Move... * gnu/packages/algebra.scm: ...here.
2019-06-19gnu: Add ratpoints.Nicolas Goaziou
* gnu/packages/maths.scm (ratpoints): New variable. * gnu/packages/patches/ratpoints-sturm_and_rp_private.patch: New file. * gnu/local.mk (dist_patch_DATA): Reference patch.
2019-06-17gnu: edge-addition-planarity-suite: Move to the (gnu packages graph) module.Andreas Enge
* gnu/packages/maths.scm (edge-addition-planarity-suite): Move from here... * gnu/packages/maths.scm (edge-addition-planarity-suite): ...to here.
2019-06-17gnu: Add edge-addition-planarity-suite.Andreas Enge
* gnu/packages/maths.scm (edge-addition-planarity-suite): New variable.
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