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2018-05-25gnu: openmpi: Update to 3.0.1.Ludovic Courtès
* gnu/packages/mpi.scm (openmpi): Update to 3.0.1. [arguments]: In 'remove-absolute' phase, adjust romio file name. * gnu/packages/maths.scm (scalapack)[arguments]: Add 'set-test-environment' phase. (slepc-openmpi)[arguments]: Likewise. (mumps-openmpi)[arguments]: Likewise. (superlu-dist)[arguments]: In 'check' phase, set 'OMPI_MCA_plm_rsh_agent'. (scotch)[arguments]: In 'build-esmumps', likewise. (p4est)[arguments]: Add 'set-test-environment' phase. (hypre-openmpi)[arguments]: Likewise.
2018-05-25gnu: superlu-dist: Update to 5.3.0.Ludovic Courtès
* gnu/packages/maths.scm (superlu-dist): Update to 5.3.0. [source](snippet): Adapt file name and function names to new version. Remove 'delete-file' call.
2018-05-17gnu: r-desolve: Update to 1.21.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (r-desolve): Update to 1.21.
2018-05-13gnu: hypre: Add missing dependency on Perl.Ludovic Courtès
Previously the test suite would fail to run 'ppmquant', though it would silently ignore it. * gnu/packages/maths.scm (hypre)[native-inputs]: Add PERL.
2018-05-11gnu: arpack-ng-openmpi: Fix build.Ludovic Courtès
* gnu/packages/maths.scm (arpack-ng-openmpi)[arguments]: Inherit arguments from ARPACK-NG. Previously the 'configure' phase would fail due to the lack of a 'configure' script.
2018-05-05gnu: Add python-kiwisolver.Marius Bakke
* gnu/packages/maths.scm (python-kiwisolver, python2-kiwisolver): New public variables.
2018-05-04gnu: gnuplot: Update to 5.2.2Adam Massmann
* gnu/packages/maths.scm (gnuplot): Update to 5.2.2. [arguments]: New field. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-04-26gnu: mumps: Update to 5.1.2.Eric Bavier
* gnu/packages/maths.scm (mumps): Update to 5.1.2.
2018-04-26gnu: scotch: Update to 6.0.5a.Eric Bavier
* gnu/packages/patches/pt-scotch-build-parallelism.patch: Delete files. * gnu/packages/patches/scotch-build-parallelism.patch, gnu/packages/patches/scotch-graph-diam-64.patch, gnu/packages/patches/scotch-graph-induce-type-64.patch: New files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/maths.scm (scotch): Update to 6.0.5a. [source](patches): Adjust accordingly.
2018-04-21gnu: r-subplex: Update to 1.5-4.Ricardo Wurmus
* gnu/packages/maths.scm (r-subplex): Update to 1.5-4.
2018-04-08gnu: vc: Do not optimize for the build machine CPU.Marius Bakke
* gnu/packages/maths.scm (vc)[arguments]: Add "-DTARGET_ARCHITECTURE=none" to #:configure-flags.
2018-03-31gnu: Add qtoctave.Kei Kebreau
* gnu/packages/maths.scm (qtoctave): New variable.
2018-03-31gnu: octave: Add audio and more sparse matrix support.Kei Kebreau
* gnu/packages/maths.scm (octave)[inputs]: Add suitesparse, libsndfile, portaudio and alsa-lib.
2018-03-28gnu: Add tcalc.Nadya Voronova
* gnu/packages/maths.scm (tcalc): New variables. Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-03-25gnu: scotch: Use predictable source URI.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (scotch)[source]: Use predictable URI.
2018-03-25gnu: openlibm: Update to 0.5.5.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (openlibm): Update to 0.5.5.
2018-03-25gnu: ceres-solver: Update to 1.14.0.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (ceres-solver): Update to 1.14.0.
2018-03-20Correct name and Email for ng0.ng0
* .mailmap: Correct name and Email for ng0. * Makefile.am, doc/guix.texi, etc/completion/fish/guix.fish gnu/packages/accessibility.scm, gnu/packages/admin.scm, gnu/packages/audio.scm, gnu/packages/autotools.scm, gnu/packages/cdrom.scm, gnu/packages/check.scm, gnu/packages/cinnamon.scm, gnu/packages/compression.scm, gnu/packages/crypto.scm, gnu/packages/databases.scm, gnu/packages/django.scm, gnu/packages/dns.scm, gnu/packages/emacs.scm, gnu/packages/enlightenment.scm, gnu/packages/fonts.scm, gnu/packages/fontutils.scm, gnu/packages/forth.scm, gnu/packages/fvwm.scm, gnu/packages/games.scm, gnu/packages/gl.scm, gnu/packages/gnome.scm, gnu/packages/gnunet.scm, gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm, gnu/packages/gtk.scm, gnu/packages/guile-wm.scm, gnu/packages/guile.scm, gnu/packages/haskell-check.scm, gnu/packages/haskell-crypto.scm, gnu/packages/haskell.scm, gnu/packages/image-viewers.scm, gnu/packages/image.scm, gnu/packages/irc.scm, gnu/packages/language.scm, gnu/packages/libcanberra.scm, gnu/packages/linux.scm, gnu/packages/lisp.scm, gnu/packages/lolcode.scm, gnu/packages/lxde.scm, gnu/packages/lxqt.scm, gnu/packages/mail.scm, gnu/packages/markup.scm, gnu/packages/mate.scm, gnu/packages/maths.scm, gnu/packages/mc.scm, gnu/packages/messaging.scm, gnu/packages/music.scm, gnu/packages/ncurses.scm, gnu/packages/networking.scm, gnu/packages/nickle.scm, gnu/packages/openbox.scm, gnu/packages/pdf.scm, gnu/packages/perl-check.scm, gnu/packages/perl.scm, gnu/packages/python-crypto.scm, gnu/packages/python-web.scm, gnu/packages/python.scm, gnu/packages/qt.scm, gnu/packages/ruby.scm, gnu/packages/rust.scm, gnu/packages/scheme.scm, gnu/packages/serialization.scm, gnu/packages/shells.scm, gnu/packages/ssh.scm, gnu/packages/suckless.scm, gnu/packages/tbb.scm, gnu/packages/telephony.scm, gnu/packages/text-editors.scm, gnu/packages/textutils.scm, gnu/packages/time.scm, gnu/packages/tls.scm, gnu/packages/tor.scm, gnu/packages/version-control.scm, gnu/packages/video.scm, gnu/packages/vim.scm, gnu/packages/web.scm, gnu/packages/wm.scm, gnu/packages/xdisorg.scm, gnu/packages/xfce.scm, gnu/packages/xml.scm, gnu/packages/xorg.scm, gnu/services/certbot.scm, gnu/services/desktop.scm, gnu/services/version-control.scm, gnu/services/web.scm, guix/import/hackage.scm, guix/licenses.scm: Likewise. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2018-03-18gnu: Add ruby-asciimath.Ben Woodcroft
* gnu/packages/maths.scm (ruby-asciimath): New variable.
2018-03-15gnu: octave: Update to 4.2.2.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (octave): Update to 4.2.2.
2018-03-15gnu: Add r-desolve.Leo Famulari
* gnu/packages/maths.scm (r-desolve): New variable.
2018-03-15gnu: Add r-subplex.Leo Famulari
gnu/packages/maths.scm (r-subplex): New variable.
2018-03-12gnu: arpack-ng: Update to 3.5.0; use 3.3.0 for julia.Ludovic Courtès
Partly fixes <https://bugs.gnu.org/30282>. * gnu/packages/maths.scm (arpack-ng): Update to 3.5.0. [native-inputs]: New field. (arpack-ng-3.3.0): New variable. * gnu/packages/julia.scm (julia)[inputs]: Use ARPACK-NG-3.3.0.
2018-03-09gnu: hdf5: Do not record the build-time kernel version.Ricardo Wurmus
* gnu/packages/maths.scm (hdf5)[arguments]: Patch libhdf5.settings to prevent the kernel version on the build node from affecting the output.
2018-02-28gnu: dionysus: Update to 1.4.0.Efraim Flashner
* gnu/packages/maths.scm (dionysus): Update to 1.4.0.
2018-02-24gnu: wxmaxima: Update to 18.02.0.Kei Kebreau
* gnu/packages/maths.scm (wxmaxima): Update to 18.02.0. [source]: Add patch. [build-system]: Use the cmake-build-system. [native-inputs]: Remove autoconf and automake. [arguments]: Disable tests, remove 'autoconf' phase. * gnu/packages/patches/wxmaxima-do-not-use-old-gnuplot-parameters.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2018-02-23gnu: vc: Update to 1.3.3.Leo Famulari
* gnu/packages/maths.scm (vc): Update to 1.3.3.
2018-02-21gnu: lpsolve: Update to 5.5.2.5.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (lpsolve): Update to 5.5.2.5.
2018-02-21gnu: lpsolve: Update phase style.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (lpsolve)[arguments]: Use INVOKE and INSTALL-FILE, and end phases with #t.
2018-02-18Merge branch 'master' into core-updatesRicardo Wurmus
2018-02-16gnu: glpk: Update to 4.65.Marius Bakke
* gnu/packages/maths.scm (glpk): Update to 4.65.
2018-02-13Merge branch 'master' into core-updatesMark H Weaver
2018-02-13gnu: r-pracma: Update to 2.1.4.Ricardo Wurmus
* gnu/packages/maths.scm (r-pracma): Update to 2.1.4.
2018-02-12gnu: hdf5: Build with -fPIC.Ricardo Wurmus
* gnu/packages/maths.scm (hdf5)[arguments]: Add -fPIC to CFLAGS and CXXFLAGS.
2018-02-09Merge branch 'master' into core-updatesMark H Weaver
2018-02-08gnu: mcrl2: Fix typo in synopsis.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (mcrl2)[synopsis]: Fix typo. [description]: Use @dfn.
2018-02-08gnu: Add mcrl2.Jan Nieuwenhuizen
* gnu/packages/maths.scm (mcrl2): New variable.
2018-02-03Merge branch 'master' into core-updatesMark H Weaver
2018-02-02gnu: slepc: Apply invoke to configure flags.Eric Bavier
Follow-up to 94a1eb96d32fcce97ee5d9440ecffe22f7555cd5 * gnu/packages/maths.scm (slepc)[arguments]: Use 'apply' since 'flags' is a list of configure arguments.
2018-02-02gnu: Add Elemental.Eric Bavier
* gnu/packages/maths.scm (elemental): New variable.
2018-02-01Merge branch 'master' into core-updatesMarius Bakke
2018-01-29gnu: slepc: Update to 3.8.2.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (slepc): Update to 3.8.2.
2018-01-29gnu: slepc: Update licence.Tobias Geerinckx-Rice
SLEPc has been released under a 2-clause BSD licence since version 3.8. * gnu/packages/maths.scm (slepc)[licence]: Switch to bsd-2.
2018-01-29gnu: fbcat, slepc: Use INVOKE.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (fbcat)[arguments]: Substitute INVOKE for SYSTEM*. * gnu/packages/maths.scm (slepc)[arguments]: Likewise.
2018-01-29gnu: openspecfun: Update to 0.5.3.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (openspecfun): Update to 0.5.3.
2018-01-16gnu: opencascade-oce: Fix build with glibc 2.26.Leo Famulari
* gnu/packages/patches/opencascade-oce-glibc-2.26.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/maths.scm (opencascade-oce)[source]: Use it.
2017-12-31Merge remote-tracking branch 'origin/master' into core-updatesEfraim Flashner
2017-12-24gnu: Fix copyright symbol.Ricardo Wurmus
* gnu/packages/maths.scm: Fix copyright line for Dave Love.
2017-12-24gnu, doc: Use HTTPS for cran.r-project.org home pages.Tobias Geerinckx-Rice
* gnu/packages/bioinformatics.scm (r-sparql, r-acsnminer, r-gkmsvm) (r-maldiquant, r-gprofiler)[home-page]: Use HTTPS. * gnu/packages/cran.scm (r-colorspace, r-auc, r-calibrate, r-shape) (r-compare, r-proxy, r-sp, r-rmtstat, r-lmtest, r-inline, r-bbmle) (r-lpsolve, r-energy, r-suppdists, r-ksamples, r-cvst, r-drr, r-prodlim) (r-ddalpha, r-rcpproll, r-ipred, r-psych, r-truncnorm, r-rsolnp, r-laeken) (r-vcd, r-ica, r-scatterplot3d)[home-page]: Likewise. * gnu/packages/machine-learning.scm (r-adaptivesparsity, r-kernlab) [home-page]: Likewise. * gnu/packages/maths.scm (r-quadprog, r-pracma)[home-page]: Likewise. * gnu/packages/statistics.scm (r-boot, r-cluster, r-codetools, r-foreign) (r-kernsmooth, r-nlme, r-mgcv, r-rpart, r-dichromat, r-estimability) (r-pheatmap, r-labeling, r-magrittr, r-munsell, r-rcolorbrewer, r-sendmailr) (r-gdtools, r-acepack, r-formula, r-locfit, r-chron, r-coda, r-backports) (r-brew, r-commonmark, r-rstudioapi, r-plotrix, r-gridbase, r-bitops) (r-catools, r-xnomial, r-lambda-r, r-whoreadsthis, r-futile-options) (r-futile-logger, r-segmented, r-snow, r-iterators, r-foreach, r-doparallel) (r-domc, r-irlba, r-registry, r-e1071, r-bigmemory-sri, r-r-methodss3) (r-tidyselect, r-base64, r-runit, r-sfsmisc, r-gtools, r-gdata, r-gplots) (r-ztable, r-vipor, r-sourcetools, r-statmod, r-compquadform, r-mixtools) (r-fastica, r-diptest, r-modeltools, r-flexmix, r-deoptimr, r-pcapp) (r-rrcov, r-fit-models, r-robust, r-trimcluster, r-fpc, r-fnn) (r-modelmetrics, r-nloptr, r-lme4, r-tclust, r-lubridate)[home-page]: Likewise. * gnu/packages/web.scm (r-htmltools, r-hwriter, r-rjson, r-rook)[home-page]: Likewise. * doc/guix.texi (Invoking guix import, Invoking guix refresh): Likewise.
2017-12-23gnu: openblas: Build with LAPACK.Dave Love
* gnu/packages/maths.scm (openblas)[arguments]: Don't disable LAPACK; add set-extralib phase. [inputs]: Add fortran-lib. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
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