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2016-10-26gnu: r-rcpparmadillo: Update to 0.7.500.0.0.Ricardo Wurmus
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to 7.500.0. * gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.500.0.0.
2016-10-26gnu: armadillo: Update to 7.500.0.Ricardo Wurmus
* gnu/packages/maths.scm (armadillo): Update to 7.500.0.
2016-10-25gnu: coda: Remove bundled libraries.Thomas Danckaert
* gnu/packages/maths.scm (coda): Remove bundled libraries. [source]: Add patch and snippet to remove bundled zlib, pcre and expat. [inputs]: Add system zlib, pcre and expat. * gnu/packages/patches/coda-use-system-libs.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-24gnu: Add coda.Thomas Danckaert
* gnu/packages/maths.scm (coda): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-24gnu: Add hdf-eos2.Thomas Danckaert
* gnu/packages/maths.scm (hdf-eos2): New variable. * gnu/packages/patches/hdf-eos2-build-shared.patch: New file. * gnu/packages/patches/hdf-eos2-remove-gctp.patch: New file. * gnu/packages/patches/hdf-eos2-fortrantests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add patches. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-18gnu: hdf4: Really fix non-x86 architectures.Andreas Enge
This is a follow-up to commit 60da9fb1100787c49ed4910eacf50e83c6462dcc. * gnu/local.mk (dist_patch_DATA): Register patch. * gnu/packages/maths.scm (hdf4)[source]: Add patch.
2016-10-12gnu: Add hdf4Thomas Danckaert
* gnu/packages/maths.scm (hdf4, hdf4-alt): New variables. * gnu/packages/patches/hdf4-reproducibility.patch: New file. * gnu/packages/patches/hdf4-shared-fortran.patch: New file. * gnu/local.mk (dist_patch_DATA): Add patches. Co-Authored-By: Jeremy Robst <jpro@bas.ac.uk> Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-06gnu: Add hdf-eos5.Thomas Danckaert
* gnu/packages/maths.scm (hdf-eos5): New variable. * gnu/packages/patches/hdf-eos5-build-shared.patch: New file. * gnu/packages/patches/hdf-eos5-remove-gctp.patch: New file. * gnu/packages/patches/hdf-eos5-fix-szip.patch: New file. * gnu/packages/patches/hdf-eos5-fortrantests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add patches. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-05gnu: Add Vc.Leo Famulari
* gnu/packages/maths.scm (vc): New variable.
2016-10-05gnu: gsl: Disable failing tests on i686.Ludovic Courtès
* gnu/packages/patches/gsl-test-i686.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/maths.scm (gsl)[source](patches): New field.
2016-10-04gnu: gsl: Update to 2.2.1.Ludovic Courtès
* gnu/packages/maths.scm (gsl): Update to 2.2.1.
2016-10-03gnu: gctp: 'license' field now has a <license> value.Ludovic Courtès
* gnu/packages/maths.scm (gctp)[license]: Change to a <license> record.
2016-09-27gnu: Add gctp.Thomas Danckaert
* gnu/packages/maths.scm (gctp): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-21gnu: openlibm: Remove support for mips.Efraim Flashner
* gnu/packages/maths.scm (openlibm)[supported-systems]: New field, remove support for mips64el.
2016-09-12gnu: r-rcpparmadillo: Update to 0.7.400.2.0.Ricardo Wurmus
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to 7.400.2. * gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.400.2.0.
2016-09-12gnu: r-pracma: Update to 1.9.5.Ricardo Wurmus
* gnu/packages/maths.scm (r-pracma): Update to 1.9.5. [propagated-inputs]: Add "r-quadprog".
2016-09-12gnu: Add r-quadprog.Ricardo Wurmus
* gnu/packages/maths.scm (r-quadprog): New variable.
2016-09-01Revert "gnu: gsl: Update to 2.2."Mark H Weaver
This reverts commit b16b16e6c2ba9780ebdf936c325e06ebcc0a950b. Rationale: gsl-2.2 consistently fails its test suite on i686. Inkscape depends on gsl, and the grub background image is converted using inkscape, so i686 systems can no longer be built.
2016-08-30gnu: gsl: Update to 2.2.Efraim Flashner
* gnu/packages/maths.scm (gsl): Update to 2.2.
2016-08-27gnu: octave: Update to 4.0.3.Kei Kebreau
* gnu/packages/maths.scm (octave): Update to 4.0.3. [inputs]: Remove unnecessary curl, cyrus-sasl and openssl dependencies.
2016-08-22gnu: atlas: Update to 3.10.3.Efraim Flashner
* gnu/packages/maths.scm (atlas): Update to 3.10.3.
2016-08-19gnu: atlas: Use 'modify-phases'.Efraim Flashner
* gnu/packages/maths.scm (atlas)[arguments]: Use 'modify-phases'.
2016-08-04Merge branch 'core-updates'Mark H Weaver
2016-08-04Revert "Merge branch 'core-updates'"Mark H Weaver
This reverts commit 455859a50f88f625d13fc2f304111f02369b366b.
2016-08-03Rename references to (gnu packages tcsh).ng0
* gnu/packages/algebra.scm, gnu/packages/boost.scm, gnu/packages/maths.scm, gnu/packages/tex.scm, gnu/packages/vim.scm: Change broken references to module (gnu packages tcsh) to (gnu packages shells).
2016-08-01Merge branch 'core-updates'Ludovic Courtès
2016-07-31Merge branch 'master' into core-updatesMark H Weaver
2016-08-01gnu: units: Update to 2.13.Ludovic Courtès
* gnu/packages/maths.scm (units): Update to 2.13.
2016-07-31gnu: dealii: Update to 8.4.1.Andreas Enge
* gnu/packages/maths.scm (dealii): Update to 8.4.1. * gnu/packages/patches/dealii-p4est-interface.patch: Remove file.
2016-07-29Merge branch 'master' into core-updatesMark H Weaver
2016-07-29gnu: Sync GNU descriptions with upstream.Ludovic Courtès
From 'guix lint -c gnu-description'. * gnu/packages/gnunet.scm (gnunet): Adjust description. * gnu/packages/marst.scm (marst): Likewise. * gnu/packages/maths.scm (c-graph): Likewise. * gnu/packages/networking.scm (macchanger): Likewise.
2016-07-26gnu: lpsolve: Fix compilation issue.Ludovic Courtès
Reported by Andreas Enge <andreas@enge.fr> at <https://lists.gnu.org/archive/html/guix-devel/2016-07/msg01018.html>. * gnu/packages/maths.scm (lpsolve)[source]: Augment 'snippet'.
2016-07-26gnu: lpsolve: Fail as early as possible.Ludovic Courtès
* gnu/packages/maths.scm (lpsolve)[arguments]: In 'build' phase, check the return value of 'system*' and honor it.
2016-07-22gnu: gnuplot: Update to upstream's re-release of 5.0.4.Efraim Flashner
* gnu/packages/maths.scm (gnuplot): Add a guix revision number to the version scheme of gnuplot to force an update.
2016-07-21gnu: muparser: Update source URL.Leo Famulari
* gnu/packages/maths.scm (muparser)[source]: Update source URL to new location. Use URL-FETCH instead of SVN-FETCH. Update hash and package revision.
2016-07-21gnu: Update URLs for sourceforge.net.Leo Famulari
* gnu/packages/admin.scm: Update URLs pointing to sourceforge.net. * gnu/packages/audacity.scm: Likewise. * gnu/packages/audio.scm: Likewise. * gnu/packages/bioinformatics.scm: Likewise. * gnu/packages/boost.scm: Likewise. * gnu/packages/cdrom.scm: Likewise. * gnu/packages/code.scm: Likewise. * gnu/packages/compression.scm: Likewise. * gnu/packages/cups.scm: Likewise. * gnu/packages/djvu.scm: Likewise. * gnu/packages/docbook.scm: Likewise. * gnu/packages/documentation.scm: Likewise. * gnu/packages/flashing-tools.scm: Likewise. * gnu/packages/fonts.scm: Likewise. * gnu/packages/fontutils.scm: Likewise. * gnu/packages/games.scm: Likewise. * gnu/packages/ghostscript.scm: Likewise. * gnu/packages/gl.scm: Likewise. * gnu/packages/gnucash.scm: Likewise. * gnu/packages/graphviz.scm: Likewise. * gnu/packages/image.scm: Likewise. * gnu/packages/libreoffice.scm: Likewise. * gnu/packages/libusb.scm: Likewise. * gnu/packages/linux.scm: Likewise. * gnu/packages/lirc.scm: Likewise. * gnu/packages/maths.scm: Likewise. * gnu/packages/mcrypt.scm: Likewise. * gnu/packages/mp3.scm: Likewise. * gnu/packages/music.scm: Likewise. * gnu/packages/networking.scm: Likewise. * gnu/packages/onc-rpc.scm: Likewise. * gnu/packages/password-utils.scm: Likewise. * gnu/packages/pdf.scm: Likewise. * gnu/packages/perl.scm: Likewise. * gnu/packages/photo.scm: Likewise. * gnu/packages/popt.scm: Likewise. * gnu/packages/python.scm: Likewise. * gnu/packages/rdesktop.scm: Likewise. * gnu/packages/screen.scm: Likewise. * gnu/packages/swig.scm: Likewise. * gnu/packages/tcl.scm: Likewise. * gnu/packages/version-control.scm: Likewise. * gnu/packages/video.scm: Likewise. * gnu/packages/w3m.scm: Likewise. * gnu/packages/web.scm: Likewise. * gnu/packages/wm.scm: Likewise. * gnu/packages/xdisorg.scm: Likewise. * gnu/packages/xml.scm: Likewise.
2016-07-21gnu: gnuplot: Update to 5.0.4.Efraim Flashner
* gnu/packages/maths.scm (gnuplot): Update to 5.0.4.
2016-07-20gnu: superlu-dist: Remove non-free source.Eric Bavier
* gnu/packages/maths.scm (superlu-dist)[source]: Replace non-free mc64ad.c source with stub.
2016-07-20gnu: slepc: Update to 3.7.1.Eric Bavier
* gnu/packages/maths.scm (slepc): Update to 3.7.1.
2016-07-20gnu: petsc: Update to 3.7.2.Eric Bavier
* gnu/packages/maths.scm (petsc): Update to 3.7.2. [arguments]: Adjust scrubbed files.
2016-07-20gnu: petsc: Make header generation reproducible.Eric Bavier
* gnu/packages/maths.scm (petsc)[arguments]: Scrub timestamp from petscmachineinfo.h header.
2016-07-20gnu: petsc: Use modify-phases.Eric Bavier
* gnu/packages/maths.scm (petsc)[arguments]: Use modify-phases.
2016-07-20gnu: superlu: Update to 5.2.1.Eric Bavier
* gnu/packages/maths.scm (superlu): Update to 5.2.1. [source]: Remove non-free MC64 code. [inputs]: Use openblas instead of lapack's BLAS. [build-system]: Use cmake-build-system. [arguments]: Remove custom phases and replace with CMake flags. [license]: List additional licenses for some source and example files.
2016-07-20gnu: Add libhilbert.Eric Bavier
* gnu/packages/maths.scm (libhilbert): New variable.
2016-07-19gnu: atlas: Use @example in description.Ludovic Courtès
* gnu/packages/maths.scm (atlas)[description]: Use "@example".
2016-07-19gnu: atlas: Use cpupower in description.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (atlas)[description]: Replace 'cpufreq-selector' with its replacement 'cpupower --governor'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-17gnu: lapack: Build the LAPACKE library.Ricardo Wurmus
* gnu/packages/maths.scm (lapack)[arguments]: Add "-DLAPACKE=ON".
2016-07-03gnu: openspecfun: Update to 0.5.2.Efraim Flashner
* gnu/packages/maths.scm (openspecfun): Update to 0.5.2.
2016-07-03gnu: openlibm: Update to 0.5.1.Efraim Flashner
* gnu/packages/maths.scm (openlibm): Update to 0.5.1.
2016-06-29gnu: ceres-solver: Propagate GLOG.Ludovic Courtès
* gnu/packages/maths.scm (ceres)[inputs]: Move GLOG to... [propagated-inputs]: ... here. New field.
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