Age | Commit message (Collapse) | Author |
|
* gnu/packages/maths.scm (nlopt): Update to 2.7.1.
[source]: Fetch from git.
[build-system]: Use cmake-build-system.
[arguments]: Adjuts 'set-libnlopt-file-name phase.
[inputs]: Replace guile-2.0 with guile-3.0; add octave and python.
[native-inputs]: Add swig.
|
|
* gnu/packages/maths.scm (n2p2): New variable.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
|
|
* gnu/packages/maths.scm (dealii): Update to 9.3.3.
* gnu/packages/patches/dealii-fix-compiliation-with-boost-1.78.patch:
Delete file.
* gnu/packages/patches/dealii-fix-sundials.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
|
|
* gnu/packages/maths.scm (dealii)[propagated-inputs]: Add sundials-5.
Reformat list to clarify comment.
(dealii-openmpi)[propagated-inputs]: Add sundials-openmpi-5.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
|
|
* gnu/packages/maths.scm (dealii-openmpi)[inputs]: Remove labels.
[propagated-inputs]: Same.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
|
|
* gnu/packages/maths.scm (dealii)[snippet]: Remove trailing boolean (and
therefore the 'begin').
[native-inputs, inputs]: Reindent.
[arguments]<#:phases>: Remove trailing boolean.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
|
|
* gnu/packages/maths.scm (sundials-5, sundials-openmpi-5): New
variables.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
|
|
* gnu/packages/maths.scm (sundials): Update to 6.2.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
|
|
* gnu/packages/maths.scm (sundials-openmpi)[propagated-inputs]: Add
hypre-openmpi.
[arguments]<#:configure-flags>: Add -DENABLE_HYPRE, -DHYPRE_INCLUDE_DIR
and -DHYPRE_LIBRARY_DIR.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
|
|
This commit fixes various issues. First, some of SUNDIALS's CMake
variables were renamed at some point between 5.2.0 and 5.7.0, in
particular KLU_ENABLE, which was changed to ENABLE_KLU. Since
sundials-julia is essentially SUNDIALS 5.2.0, its configure flags need
to be different from those of the sundials package. Second, commit
61bcd648ca215e3d8e75b3a3f49bfb94d66f7c79, which updated SUNDIALS to
6.1.1, accidentally completely disabled PETSc support for
sundials-openmpi (PETSc is supported only with MPI) by removing the
relevant configure flags. Third, SUNDIALS's default index size is
64 bits, but PETSc's is 32 bits, and they need to be the same; this
issue is discussed in the next three paragraphs.
The default index size in SUNDIALS 3.1.1 (which was the sundials
package's version previous to the aforementioned commit) was also
64 bits (though it was configured through the SUNDIALS_INDEX_TYPE CMake
variable, which could take the values INT64_T or INT32_T), but
SUNDIALS's configure script didn't warn of any incompatibility with
PETSc's 32-bit indices. I don't know if this was an accidental omission
from the configure script or if SUNDIALS's index size didn't have to
correspond to PETSc's at the time.
Keeping 64-bit indices in SUNDIALS would require adding a package for
PETSc with 64-bit indices (using the --with-64-bit-indices configure
flag), possibly named petsc64-openmpi (to follow the style of the SCOTCH
packages, i.e., scotch, scotch32, etc., though there the unadorned
package name represents the 64-bit version, unlike the unadorned petsc),
which would in turn require a package for METIS with 64-bit
indices (using IDXTYPEWIDTH=64). However, SUNDIALS is an optional
dependency of deal.II, both of which have PETSc as an optional
dependency, and deal.II's index size (which defaults to 32 bits) must
match PETSc's. In other words, the current deal.II package can build
with SUNDIALS only if SUNDIALS has 32-bit indices.
Furthermore, users needing 64-bit indices in SUNDIALS probably also need
them in PETSc and other libraries. If and when 64-bit indices are deemed
necessary, we can add all the package variations at once (for SUNDIALS,
PETSc, METIS, deal.II and any others).
* gnu/packages/maths.scm (sundials)[source]: Reuse version in URL.
[native-inputs]: Capitalize and punctuate comment.
[inputs]: Remove petsc, now unnecessary gfortran, and obsolete
comment. Move TODO item to sundials-openmpi.
[arguments]<#:configure-flags>: Add -DSUNDIALS_INDEX_SIZE=32 to match
PETSc's 32-bit indices. Remove obsolete -DEXAMPLES_ENABLE_F77,
-DEXAMPLES_ENABLE_F90 and -DFCMIX_ENABLE. Mention new but currently
unusable -DBUILD_FORTRAN_MODULE_INTERFACE and
-DEXAMPLES_ENABLE_F2003. Rename KLU_ENABLE to ENABLE_KLU.
(sundials-openmpi): Use package/inherit.
[inputs]: Move openmpi and petsc-openmpi from here...
[propagated-inputs]: ...to here. Clarify comment.
[arguments]<#:configure-flags>: Add -DENABLE_PETSC and -DPETSC_DIR, the
equivalents of which were accidentally removed in commit
61bcd648ca215e3d8e75b3a3f49bfb94d66f7c79.
<#:phases>: Replace a tab with spaces.
[synopsis]: Replace OpenMPI with MPI to conform to other package
synopses.
(sundials-julia)[inputs]: Add gfortran.
[arguments]<#:configure-flags>: Set only, and manually, -DCMAKE_C_FLAGS,
-DSUNDIALS_INDEX_SIZE, -DKLU_ENABLE, -DKLU_INCLUDE_DIR,
-DKLU_LIBRARY_DIR and -DLAPACK_ENABLE instead of inheriting from the
sundials package, because some of SUNDIALS's CMake variables have
changed name.
[synopsis]: Capitalize “LAPACK”.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
|
|
* gnu/packages/maths.scm (petsc-openmpi)[arguments]: Add
'patch-header-inclusions' phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
|
|
* gnu/packages/maths.scm (nomad-optimizer)[arguments]: Disable the
examples/advanced/library/PSDMads test.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
|
|
* gnu/packages/maths.scm (lrslib): Update to 7.2.
|
|
* gnu/packages/maths.scm (nomad-optimizer)[arguments]<#:phases>
[fix-sources-for-tests]: Enable the pipefail option in the (generated)
script that runs tests. Enable the basic batch example3 test. Fix the
advanced library FixedVariable test (and seemingly the neighbor PSDMads
test). Expand some comments.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
|
|
* gnu/packages/maths.scm (nomad-optimizer): Update to 4.2.0.
[arguments]: Accommodate updated build process.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
|
|
* gnu/packages/maths.scm (nomad-optimizer)[arguments]: Remove trailing
booleans.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
|
|
* gnu/packages/maths.scm (nomad-optimizer)[native-inputs]: Remove
labels.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
|
|
* gnu/packages/maths.scm (gmsh): Update to 4.9.5.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
|
|
* gnu/packages/maths.scm (gnuplot): Update to 5.4.3.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
|
|
* gnu/packages/maths.scm (sundials)[native-inputs, inputs]: Remove labels.
(sundials-openmpi)[inputs]: Remove labels.
|
|
* gnu/packages/maths.scm (sundials): Update to 6.1.1.
[inputs]: Add PETSC.
(sundials-openmpi)[inputs]: Remove PETSC.
[arguments]: Remove now unnecessary flags. Change "MPI_ENABLE" to "ENABLE_MPI".
|
|
* gnu/packages/maths.scm (gsl)[arguments]: Force an autotools bootstrap
when cross-compiling to riscv64-linux.
[native-inputs]: Add autoconf, automake and libtool when cross-compiling
to riscv64-linux.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
|
|
* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Use 'modify-inputs'.
[arguments]: Adjust label name for hdf5.
|
|
* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add SCOTCH:METIS.
[arguments]: Add 'adjust-pt-scotch-library-names' phase.
|
|
Previously, the 'scotch' and 'pt-scotch' packages would use the default
int size, which turned out to be 32 on x86_64-linux instead of 64 as it
used to be in Scotch 6.x.
* gnu/packages/maths.scm (scotch)[arguments]: Add "-DINTSIZE" to #:configure-flags.
(scotch32)[arguments]: Likewise.
(pt-scotch)[arguments]: Likewise.
(pt-scotch32)[arguments]: Likewise.
|
|
* gnu/packages/maths.scm (hypre)[native-inputs, inputs]: Remove labels.
(hypre-openmpi)[inputs]: Use 'modify-inputs'.
|
|
* gnu/packages/tex.scm (texlive-latex-wrapfig): Rename to...
(texlive-wrapfig): ... this.
(texlive-latex-wrapfig): Define as deprecated.
* gnu/packages/maths.scm (hypre)[native-inputs]: Use new name.
* gnu/packages/python-xyz.scm (python-ipython-documentation)
(python-numpy-documentation): Likewise.
|
|
* gnu/packages/maths.scm (why3): Update to 1.4.1.
|
|
iconv is part of glibc, there is no need to add it as input.
* gnu/packages/accessibility.scm (brltty)[inputs]: Remove LIBICONV.
* gnu/packages/compression.scm (innoextract)[inputs]: Likewise.
* gnu/packages/haskell-apps.scm (darcs)[inputs]: Likewise.
* gnu/packages/kde-multimedia.scm (k3b)[inputs]: Likewise.
* gnu/packages/linphone.scm (liblinphone)[inputs]: Likewise.
* gnu/packages/mail.scm (mailutils)[inputs]: Likewise.
* gnu/packages/maths.scm (libqalculate)[inputs]: Likewise.
* gnu/packages/pep.scm (pep-engine)[inputs]: Likewise.
* gnu/packages/vim.scm (neovim)[inputs]: Likewise.
* gnu/packages/wget.scm (wget2)[inputs]: Likewise.
* gnu/packages/telegram.scm (telegram-desktop)[inputs]: Likewise.
* gnu/packages/video.scm (transcode)[native-inputs]: Likewise.
|
|
* gnu/packages/maths.scm (mumps)[inputs]: Remove labels.
[arguments]: Adjust 'configure' phase to not rely on the "mpi" and
"blas" labels.
(mumps-metis, mumps-openmpi, mumps-metis-openmpi): Use 'modify-inputs'.
|
|
* gnu/packages/maths.scm (scotch): Update to 7.0.1.
[source]: Switch to 'git-fetch'.
[build-system]: Switch to CMAKE-BUILD-SYSTEM.
[arguments]: Add #:configure-flags. Remove #:make-flags. Remove
'chdir-to-src', 'configure', and 'build-esmumps' phases.
[properties]: Update 'release-monitoring-url' property.
(scotch32, pt-scotch, pt-scotch32): Update accordingly, replacing now
useless build phases with #:configure-flags.
(scotch-shared, pt-scotch-shared): Mark as deprecated.
(mumps)[arguments]: In 'configure' phase, use '-lesmumps'
unconditionally, since that's now how pt-scotch calls it.
|
|
* gnu/packages/maths.scm (opencascade-occt): Update to 7.6.0.
[native-inputs]: Add fontconfig.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
|
|
* gnu/packages/maths.scm (superlu): Update to 5.3.0.
[source]: Adjust to new url.
|
|
* gnu/packages/maths.scm (openblas)[arguments]: Adjust make-flags on
riscv64-linux to target the correct architecture when building for
riscv64-linux.
|
|
* gnu/packages/python-xyz.scm (python-nbconvert):
* gnu/packages/maths.scm (hypre): Apply deprecation.
* gnu/packages/tex.scm (texlive-generic-ulem): Fix typo in deprecation
command.
|
|
* gnu/packages/maths.scm (hypre):
* gnu/packages/python-xyz.scm (python-numpy-documentation):
(python-ipython-documentation): Use texlive-capt-of instead of texlive-latex-capt-of.
|
|
* gnu/packages/patches/jacal-fix-texinfo.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Delete this.
* gnu/packages/maths.scm (jacal)[source]: Delete this patch.
[version]: Update to 1c7.
Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
|
|
* gnu/packages/maths.scm (dune-pdelab): Update to 2.7.1.
[version]: Use `git-version` to compute the version string.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
|
|
* gnu/packages/maths.scm (dune-functions): Update to 2.7.1.
[arguments]: Parallelize build-tests phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
|
|
* gnu/packages/maths.scm (dune-typetree): Update to 2.7.1.
[arguments]: Parallelize build-tests phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
|
|
* gnu/packages/maths.scm (dune-subgrid): Update to 2.7.1.
[version]: Use `git-version` to compute the version string.
[arguments]: Parallelize build-tests phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
|
|
* gnu/packages/maths.scm (dune-alugrid): Update to 2.7.1.
[version]: Use `git-version` to compute the version string.
[arguments]: Parallelize build-tests phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
|
|
* gnu/packages/maths.scm (dune-localfunctions): Update to 2.7.1.
[arguments]: Parallelize build-tests phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
|
|
* gnu/packages/maths.scm (dune-istl): Update to 2.7.1.
[arguments]: Parallelize build-tests phase.
[source](patches) Remove patch that is no longer needed.
* gnu/packages/patches/dune-istl-2.7-fix-non-mpi-tests.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove above patch.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
|
|
* gnu/packages/maths.scm (dune-grid): Update to 2.7.1.
[arguments]: Parallelize build-tests phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
|
|
* gnu/packages/maths.scm (dune-uggrid): Update to 2.7.1.
[arguments]: Parallelize build-tests phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
|
|
* gnu/packages/maths.scm (dune-geometry): Update to 2.7.1.
[arguments]: Parallelize build-tests phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
|
|
* gnu/packages/maths.scm (dune-common): Update to 2.7.1.
[arguments]: Parallelize build-tests phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
|
|
* gnu/packages/maths.scm (add-openmpi-to-dune-package): Use
modify-inputs.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
|
|
* gnu/packages/maths.scm (python2-cvxopt): Remove variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
|