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2019-03-19gnu: Add python-flint.Andreas Enge
* gnu/packages/algebra.scm (python-flint): New variable. * gnu/packages/patches/python-flint-includes.patch: New file. * gnu/local.mk (dist_patch_DATA): Register the patch.
2019-03-18gnu: cracklib: Update to 2.9.7.Tobias Geerinckx-Rice
* gnu/packages/password-utils.scm (cracklib): Update to 2.9.7. [source]: Remove patches. * gnu/packages/patches/cracklib-CVE-2016-6318.patch, gnu/packages/patches/cracklib-fix-buffer-overflow.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove them.
2019-03-18gnu: libextractor: Update to 1.9.ng0
* gnu/packages/gnunet (libextractor): Update to 1.9. [source]: Remove patches. * gnu/packages/patches/libextractor-CVE-2018-20430.patch gnu/packages/patches/libextractor-CVE-2018-20431.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2019-03-15gnu: meson: Update to 0.50.0.Marius Bakke
* gnu/packages/build-tools.scm (meson): Update to 0.50.0. * gnu/packages/patches/at-spi2-core-meson-compat.patch, gnu/packages/patches/totem-meson-compat.patch: New files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/gnome.scm (totem)[source](patches): Add totem-meson.compat.patch. * gnu/packages/gtk.scm (at-spi2-core)[source](patches): New field.
2019-03-14Merge branch 'master' into stagingMarius Bakke
2019-03-10gnu: pugixml: Build as shared library.Marius Bakke
* gnu/packages/patches/pugixml-versioned-libdir.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/xml.scm (pugixml)[source](patches): New field. [arguments]: Instruct the build system to create a shared rather than static library. [native-inputs]: Add PKG-CONFIG.
2019-03-10Merge branch 'master' into stagingMarius Bakke
2019-03-08gnu: blast+: Update to 2.7.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (blast+): Update to 2.7.1. [inputs]: Add lmdb. [source]: Remove obsolete patch. * gnu/package/patches/blast+-fix-makefile.patch: Remove patch. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-03-07gnu: gnome-todo: Update to 3.28.1.Ricardo Wurmus
* gnu/packages/gnome.scm (gnome-todo): Update to 3.28.1. * gnu/local.mk (dist_patch_DATA): Remove patch. * gnu/packages/patches/gnome-todo-libical-compat.patch: Remove file.
2019-03-07gnu: gcr: Update to 3.28.0.Ricardo Wurmus
* gnu/packages/patches/gcr-disable-failing-tests.patch, gnu/packages/patches/gcr-fix-collection-tests-to-work-with-gpg-21.patch: Remove files. * gnu/local.mk (dist_patch_DATA): Remove patches. * gnu/packages/gnome.scm (gcr): Update to 3.28.0. [arguments]: Add phase "disable-failing-tests"; rewrite "pre-check" phase. [native-inputs]: Add libxml2.
2019-03-06gnu: valgrind: Update to 3.14.0.Marius Bakke
* gnu/packages/patches/valgrind-glibc-compat.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/valgrind.scm (valgrind): Update to 3.14.0. [supported-systems]: Add mips64el-linux.
2019-03-06Merge branch 'master' into stagingMarius Bakke
2019-03-05gnu: rust: Update to 1.31.1.Ivan Petkov
* gnu/patches/rust-1.30-gdb-llvm.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/rust.scm (rust): Rename to... (rust-1.29): ...this. (rust-1.30): New variable. (rust): New variable. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-04Merge branch 'master' into stagingMarius Bakke
2019-03-04gnu: thermald: Update to 1.8.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (thermald): Update to 1.8. [source]: Add patch. * gnu/packages/patches/thermald-make-int-max32-visible.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2019-03-04gnu: lyx: Remove obsolete patch.Ricardo Wurmus
* gnu/packages/patches/lyx-2.2.3-fix-test.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-03-03gnu: libopenshot: Fix tests on other architectures.Efraim Flashner
* gnu/packages/video.scm (libopenshot)[source]: Add patch. * gnu/packages/patches/libopenshot-fixup-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2019-03-01Merge branch 'master' into stagingMarius Bakke
2019-03-01gnu: openssl: Fix CVE-2019-1559.Tobias Geerinckx-Rice
* gnu/packages/tls.scm (openssl)[replacement]: New field. (openssl/fixed): New variable. (openssl-next)[inherit]: Inherit from it instead. * gnu/packages/patches/openssl-CVE-2019-1559.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2019-02-28gnu: netpbm: Fix CVE-2017-258[67].Tobias Geerinckx-Rice
* gnu/packages/netpbm.scm (netpbm)[source]: Add patches. * gnu/packages/patches/netpbm-CVE-2017-2586.patch, gnu/packages/patches/netpbm-CVE-2017-2587.patch: New files. * gnu/local.mk: Fix missing copyright year. (dist_patch_DATA): Add them.
2019-02-28gnu: wpa_supplicant: Update to 2.7.Marius Bakke
* gnu/packages/patches/wpa-supplicant-CVE-2017-13082.patch, gnu/packages/patches/wpa-supplicant-CVE-2018-14526.patch, gnu/packages/patches/wpa-supplicant-fix-key-reuse.patch, gnu/packages/patches/wpa-supplicant-fix-nonce-reuse.patch, gnu/packages/patches/wpa-supplicant-fix-zeroed-keys.patch, gnu/packages/patches/wpa-supplicant-krack-followups.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/admin.scm (wpa-supplicant-minimal): Update to 2.7. [source](patches): Remove.
2019-02-27gnu: wesnoth: Update to 1.14.6.Tobias Geerinckx-Rice
* gnu/packages/games.scm (wesnoth): Update to 1.14.6. [source]: Remove upstreamed patch. * packages/patches/wesnoth-newer-boost.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-02-27gnu: musescore: Update to 3.0.3.Nicolas Goaziou
* gnu/packages/music.scm (musescore): Update to 3.0.3. [source]: Remove now obsolete patch. [arguments]: Do not use bundled (as a submodule) libcrashreporter-qt. * gnu/packages/patches/musescore-fix-use_webengine.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Apply file removal.
2019-02-24Merge branch 'master' into stagingMarius Bakke
2019-02-24gnu: GCC: Don't modify copyright headers in xtensa patch.Marius Bakke
* gnu/packages/patches/ath9k-htc-firmware-gcc.patch: Drop hunk.
2019-02-24gnu: clamav: Update to 0.101.1.Tobias Geerinckx-Rice
* gnu/packages/antivirus.scm (clamav): Update to 0.101.1. [source]: Delete bundled tomsfastmath outright. [native-inputs]: Remove bison and flex. [inputs]: Switch to pcre2. * gnu/packages/patches/clamav-system-tomsfastmath.patch: Update.
2019-02-24gnu: Add libtommath.Efraim Flashner
* gnu/packages/multiprecision.scm (libtommath): New variable. * gnu/packages/patches/libtommath.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2019-02-20Merge branch 'master' into stagingMarius Bakke
2019-02-20gnu: xmodmap: Update to 1.0.10.Marius Bakke
* gnu/packages/patches/xmodmap-asprintf.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/xorg.scm (xmodmap): Update to 1.0.10. [source](patches): Remove. [home-page]: Set to source repository.
2019-02-19gnu: libgd: Fix CVE-2019-{6977,6978}.Leo Famulari
* gnu/packages/gd.scm (gd)[replacement]: New field. (gd/fixed): New variable. * gnu/packages/patches/gd-CVE-2019-6977.patch, gnu/packages/patches/gd-CVE-2019-6978.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them.
2019-02-19gnu: soundconverter: Update to 3.0.1.Tobias Geerinckx-Rice
* gnu/packages/gnome.scm (soundconverter): Update to 3.0.1. [arguments]: Remove ‘fix-POTFILES.in’ phase. * gnu/packages/patches/soundconverter-remove-gconf-dependency.patch: Update.
2019-02-18gnu: tomsfastmath: Update to 0.13.1.Tobias Geerinckx-Rice
* gnu/packages/multiprecision.scm (tomsfastmath): Update to 0.13.1. [source]: Remove patch. * gnu/packages/patches/tomsfastmath-constness.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-02-17gnu: xf86-video-i128: Update to 1.4.0.Marius Bakke
* gnu/packages/patches/xf86-video-i128-remove-mibstore.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/xorg.scm (xf86-video-i128): Update to 1.4.0. [source](patches): Remove.
2019-02-17gnu: pius: Update to 2.2.7.Tobias Geerinckx-Rice
* gnu/packages/gnupg.scm (pius): Update to 2.2.7. [source]: Remove upstreamed patch. * gnu/packages/patches/pius.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-02-15gnu: LLVM, Clang: Update to 7.0.1.Marius Bakke
* gnu/packages/patches/clang-7.0-libc-search-path.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/llvm.scm (llvm, clang-runtime, clang): Update to 7.0.1. (llvm-7.0.1): Remove variable. (clang-from-llvm)[arguments]: Adjust phase to match Clang 7. (llvm-6, clang-runtime-6, clang-6): New public variables. * gnu/packages/dlang.scm (ldc)[native-inputs]: Change LLVM and CLANG to LLVM-6.0 and CLANG-6.0. * gnu/packages/gl.scm (mesa)[inputs]: Change from LLVM to LLVM-6.
2019-02-15gnu: allegro@4: Update to 4.4.3.Tobias Geerinckx-Rice
* gnu/packages/game-development.scm (allegro-4): Update to 4.4.3. [source]: Remove upstreamed patch. * gnu/packages/patches/allegro4-mesa-18.2.5-and-later.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-02-14gnu: ruby-safe-yaml: Add missing require 'time'.Christopher Baines
Patch ruby-safe-yaml to fix an issue that would lead to an error like this: uninitialized constant SafeYAML::Parse::Date::DateTime It's been reported upstream [1], and this patch was taken from the upstream Git repository. 1: https://github.com/dtao/safe_yaml/issues/80 * gnu/packages/ruby.scm (ruby-safe-yaml)[source]: Switch to the Git repository so that applying patches works and add a patch. [arguments]: Enable tests and add a phase to set the TZ environment variable, as one of the tests depends on a certian timezone. * gnu/packages/patches/ruby-safe-yaml-add-require-time.patch: New file. * gnu/local.mk (dist_patch_DATA): Add new patch file.
2019-02-13gnu: dealii: Upgrade to 9.0.1.Eric Bavier
* gnu/packages/patches/dealii-mpi-deprecations.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/maths.scm (dealii)[source]: Upgrade to 9.0.1. Use patch. [arguments]: Use new MPI configuration flags.
2019-02-14gnu: qtbase: Restore compilation on linux kernels < 4.11.Andreas Enge
Fixes <https://bugs.gnu.org/34431>. * gnu/packages/patches/qtbase-old-kernel.patch: New file. * gnu/local.mk (dist_patch_DATA): Register patch. * gnu/packages/qt.scm (qtbase): Add patch.
2019-02-14gnu: doxygen: Update to 1.8.15.Marius Bakke
* gnu/packages/documentation.scm (doxygen): Update to 1.8.15. * gnu/packages/patches/doxygen-test.patch: Update for upstream changes.
2019-02-14Merge branch 'master' into stagingMarius Bakke
2019-02-13gnu: scalapack: Remove use of deprecated MPI1 symbols.Eric Bavier
* gnu/packages/patches/scalapack-blacs-mpi-deprecations.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/maths.scm (scalapack)[source]: Use it.
2019-02-13gnu: mrustc: Fix deserialization bug in communication with the proceduralDanny Milosavljevic
macro compiler plugin. * gnu/packages/patches/mrustc-0.8.0-fix-variable-length-integer-receiving.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/rust.scm (mrustc)[source]: Use it. Co-authored-by: Chris Marusich <cmmarusich@gmail.com>
2019-02-13gnu: ledger: Update to 3.1.2 [security fixes].Ricardo Wurmus
* gnu/packages/finance.scm (ledger): Update to 3.1.2. [arguments]: Remove #:modules; remove obsolete configure flags; remove make flags; remove phase "boost-compat"; remove custom check phase; remove "relocate-elisp" phase; disable broken test in "check-setup" phase. [native-inputs]: Remove emacs-minimal. [license]: Remove gpl2+. * gnu/packages/patches/ledger-revert-boost-python-fix.patch: Remove patch. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-02-13gnu: red-eclipse: Fix build.Christopher Baines
Add a patch from the upstream repository [1] that resolves some errors that prevent the package from building [2]. 1: https://github.com/red-eclipse/base/commit/b16b4963c1ad81bb9ef784bc49 2: error: ‘____gammal_r_finite’ was not declared in this scope * gnu/packages/games.scm (red-eclipse)[source] Add patch. * gnu/packages/patches/red-eclipse-remove-gamma-name-hack.patch: New file * gnu/local.mk (dist_patch_DATA): Add new patch.
2019-02-12gnu: KDE Frameworks: Update to 5.54.0.Marius Bakke
* gnu/packages/patches/kio-search-smbd-on-PATH.patch: Adjust context. * gnu/packages/kde-frameworks.scm (kconfig): Update to 5.54.0. [native-inputs]: Add DBUS. [arguments]: Run tests with "dbus-launch". (kio): Update to 5.54.1. [inputs]: Add KCRASH. (breeze-icons): Update to 5.54.0. [arguments]: Remove. (extra-cmake-modules, attica, bluez-qt, kapidox, karchive, kcodecs, kcoreaddons, kdbusaddons, kdnssd, kguiaddons, ki18n, kidletime, kirigami, kitemmodels, kitemviews, kplotting, ksyntaxhighlighting, kwayland, kwidgetsaddons, kwindowsystem, modemmanager-qt, networkmanager-qt, oxygen-icons, prison, qqc2-desktop-style, solid, sonnet, threadweaver, kactivities, kauth, kcompletion, kcrash, kdoctools, kfilemetadata, kimageformats, kjobwidgets, knotifications, kpackage, kpty, kunitconversion, baloo, kactivities-stats, kbookmarks, kcmutils, kconfigwidgets, kdeclarative, kded, kdesignerplugin, kdesu, kdewebkit, kemoticons, kglobalaccel, kiconthemes, kinit, knewstuff, knotifyconfig, kparts, kpeople, krunner, kservice, ktexteditor, ktextwidgets, kwallet, kxmlgui, kxmlrpcclient, plasma-framework, kde-frameworkintegration, kdelibs4support, khtml, kjs, kjsembed, kmediaplayer, kross): Update to 5.54.0.
2019-02-12gnu: runc: Update to 1.0.0-rc6 [fixes CVE-2019-5736].Leo Famulari
* gnu/packages/virtualization.scm (runc): Update to 1.0.0-rc6. [source]: Use a descriptive file-name. Add 'runc-CVE-2019-5736.patch' * gnu/packages/patches/runc-CVE-2019-5736.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2019-02-12gnu: glibc@2.27: fix CVE-2018-11236, CVE-2018-11237.Efraim Flashner
* gnu/packages/base.scm (glibc@2.27)[sources]: Add patches. [properties]: New field, mark CVE-2017-18269 fixed. * gnu/packages/patches/glibc-CVE-2018-11236.patch, gnu/packages/patches/glibc-CVE-2018-11237.patch: New files. * gnu/local.mk (dist_patch_DATA): Register them.
2019-02-10gnu: gnome-shell: Customize the GDM log-in screen.Ludovic Courtès
* gnu/packages/patches/gnome-shell-theme.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gnome.scm (gnome-shell)[source](patches, modules) (snippet): New fields. [arguments]: Add 'rebuild-css' phase. [native-inputs]: Add RUBY-SASS.
2019-02-09gnu: emacs-pdf-tools: Update to 0.90.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-pdf-tools): Update to 0.90. [source]: Remove patch. * gnu/packages/patches/emacs-pdf-tools-poppler.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove reference to deleted file.
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