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2020-05-05gnu: Add rust-nettle-7.Hartmut Goebel
* gnu/packages/crates-io.scm (rust-nettle-7): New variable. * gnu/packages/patches/rust-nettle-disable-vendor.patch: New file. * gnu/local.mk: Add it.
2020-05-05gnu: Add rust-nettle-sys-2.Hartmut Goebel
* gnu/packages/crates-io.scm (rust-nettle-sys-2): New variable. * gnu/packages/patches/rust-nettle-sys-disable-vendor.patch: New file. * gnu/local.mk: Add it.
2020-05-05gnu: Add grocsvs.Efraim Flashner
* gnu/packages/bioinformatics.scm (grocsvs): New variable. * gnu/packages/patches/grocsvs-dont-use-admiral.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2020-05-04gnu: Add collectdLars-Dominik Braun
* gnu/packages/monitoring.scm (collectd): New variable * gnu/local.mk (dist_patch_DATA): Add new patch * gnu/packages/patches/collectd-5.11.0-noinstallvar.patch: New file Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-05-04gnu: Add gromacs.Vincent Legoll
* gnu/packages/chemistry.scm (gromacs): New variable. * gnu/packages/patches/gromacs-tinyxml2.patch: New file... * gnu/local.mk (dist_patch_DATA): ...add it here. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-05-02gnu: Add musl-cross.Danny Milosavljevic
* gnu/packages/patches/musl-cross-locate.patch: New file. * gnu/packages/heads.scm: New file. * gnu/local.mk (dist_patch_DATA): Add one. (GNU_SYSTEM_MODULES): Add the other.
2020-05-02gnu: extempore: Update to 0.8.6.Giacomo Leidi
* gnu/packages/music.scm (extempore): Update to 0.8.6. [snippets]: Delete bundled dependencies. [patches]: Add it. * gnu/packages/patches/extempore-unbundle-external-dependencies.patch: Patch CMakeLists.txt to use system libraries. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-05-02gnu: llvm-for-extempore: Update to 3.8.Giacomo Leidi
* gnu/packages/llvm.scm (llvm-for-extempore): Update to 3.8. [source]: Use upstream patched source. * gnu/packages/patches/llvm-for-extempore.patch: Delete due to source being already patched. * gnu/local.mk (dist_patch_DATA): Remove it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-04-30gnu: VLC: Update to 3.0.10.Leo Famulari
* gnu/packages/patches/vlc-fix-test_libvlc_slaves.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/video.scm (vlc): Update to 3.0.10. [source]: Remove obsolete patch. [arguments]: Remove obsolete workarounds for libssh and fribidi compatibility issues in 'patch-source' phase.
2020-04-29gnu: OpenLDAP: Update to 2.4.50 [fixes CVE-2019-{13057,13565}].Leo Famulari
* gnu/packages/openldap.scm (openldap)[replacement]: Use openldap-2.4.50. (openldap/fixed): Replace with ... (openldap-2.4.50): ... new variable. * gnu/packages/patches/openldap-CVE-2020-12243.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2020-04-28gnu: openldap: Fix CVE-2020-12243.Efraim Flashner
* gnu/packages/openldap.scm (openldap)[replacement]: New field. (openldap/fixed): New variable. * gnu/packages/patches/openldap-CVE-2020-12243.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2020-04-28gnu: emacs-telega: Test Emacs environment on startup.Diego Nicola Barbato
Print a more helpful error message when someone attempts to run Telega on an incompatible Emacs (e.g a 32-bit Emacs without wide ints). * gnu/packages/patches/emacs-telega-test-env.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/emacs-xyz.scm (emacs-telega)[source]: Use it. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-04-25gnu: arm-trusted-firmware: Update to 2.3.Vagrant Cascadian
* gnu/packages/firmware (make-arm-trusted-firmware): Update to 2.3. [source]: Remove hdcp patch. * gnu/packages/patches/arm-trusted-firmware-disable-hdcp.patch: Remove patch. * gnu/local.mk: Update accordingly.
2020-04-24gnu: biber: Downgrade to 2.11.Ludovic Courtès
Biber 2.12 is incompatible with biblatex 3.11, which is what's currently packaged. This is a followup to 41a010875ba4108e666f11fc111cf5bb5dcf5464. * gnu/packages/tex.scm (biber): Downgrade to 2.11.
2020-04-24gnu: biber: Address test failures.Ludovic Courtès
* gnu/packages/patches/biber-sortinithash.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/tex.scm (biber)[source]: Use it.
2020-04-24gnu: llvm: Add 10.0.0.Ludovic Courtès
* gnu/packages/llvm.scm (llvm-10, clang-runtime-10, clang-10) (clang-toolchain-10, llvm-9, clang-runtime-9, clang-9) (clang-toolchain-9): New variables. (llvm, clang, clang-runtime, clang-toolchain): Redefine as aliases to the '-9' bindings. * gnu/packages/patches/clang-10.0-libc-search-path.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2020-04-22gnu: maths: dune-*: Update to version 2.7Felix Gruber
* gnu/packages/maths.scm (dune-*): Update to version 2.7. (dune-uggrid)[source] Download from Git, as no release tarball for version 2.7 exists. (dune-alugrid,dune-subgrid,dune-pdelab)[source] Use commit hashes as no tags for version 2.7 exist (yet?). (dune-istl)[source](patches) Add patch required to build version 2.7 without openmpi. * gnu/packages/patches/dune-istl-2.7-fix-non-mpi-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-04-21gnu: emacs-dired-toggle-sudo: Update to 1.0-0.13bbe52.Michael Rohleder
* gnu/packages/emacs-xyz.scm (emacs-dired-toggle-sudo): Update to 1.0-0.13bbe52. * gnu/packages/patches/emacs-dired-toggle-sudo-emacs-26.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Signed-off-by: Leo Famulari <leo@famulari.name>
2020-04-20gnu: Add u-boot-pinebook-pro-rk3399.Vagrant Cascadian
* gnu/packages/bootloaders (u-boot-pinebook-pro-rk3399): New variable. * gnu/packages/patches/u-boot-DT-for-Pinebook-Pro.patch: New file. * gnu/packages/patches/u-boot-add-boe-nv140fhmn49-display.patch: New file. * gnu/packages/patches/u-boot-gpio-keys-binding-cons.patch: New file. * gnu/packages/patches/u-boot-leds-common-binding-con.patch: New file. * gnu/packages/patches/u-boot-support-Pinebook-Pro-laptop.patch: New file. * gnu/packages/patches/u-boot-video-rockchip-fix-build.patch: New file. * gnu/local.mk (dist_patch_DATA): Add new patches. * gnu/bootloader/u-boot.scm (install-pinebook-pro-rk3399-u-boot, u-boot-pinebook-pro-rk3399-bootloader): New variable. Co-authored-by: Jan Nieuwenhuizen <janneke@gnu.org>
2020-04-20gnu: libqalculate: Fix libcurl gnutls CA cert bundle file.R Veera Kumar
* gnu/packages/patches/libqalculate-3.8.0-libcurl-ssl-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/maths.scm (libqalculate)[source]: Use it. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-04-17gnu: python-jedi: Fix test failure on some file systems.Marius Bakke
Reported by sirgazil on #guix. * gnu/packages/patches/python-jedi-sort-project-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/python-xyz.scm (python-jedi)[source](patches): Add it. [arguments]: Run tests more verbosely while at it.
2020-04-15Merge branch 'version-1.1.0'Ludovic Courtès
2020-04-15gnu: Remove libvpx@1.7.Marius Bakke
* gnu/packages/patches/libvpx-use-after-free-in-postproc.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/video.scm (libvpx-1.7): Remove variable.
2020-04-15gnu: python-jedi: Update to 0.17.0.Marius Bakke
* gnu/packages/python-xyz.scm (python-jedi): Update to 0.17.0. [source](patches): Remove. * gnu/packages/patches/python-jedi-deleted-variables.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2020-04-14gnu: txr: Call ./configure manually instead of patching.Tobias Geerinckx-Rice
* gnu/packages/lisp.scm (txr)[source]: Remove patch. [arguments]: Add ‘--prefix’ to #:configure-flags. Use a custom ‘configure’ phase. * gnu/packages/patches/txr-shell.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2020-04-11gnu: gdm: Don't offer GNOME when it's not in the system profile.Ludovic Courtès
Fixes <https://bugs.gnu.org/37831>. Reported by Pierre Neidhardt <mail@ambrevar.xyz>. * gnu/packages/patches/gdm-default-session.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gnome.scm (gdm)[source]: Use it.
2020-04-11gnu: dbacl: Update to 1.14.1.Tobias Geerinckx-Rice
* gnu/packages/textutils.scm (dbacl): Update to 1.14.1. [source]: Add patch to fix build with current glibc. [arguments]: (Try to) bootstrap only once. * gnu/packages/patches/dbacl-include-locale.h.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2020-04-10gnu: sdl-pango: Shorten file name of patch.Ludovic Courtès
* gnu/packages/patches/sdl-pango-fix-explicit-SDLPango_CopyFTBitmapTo.patch: Rename to... * gnu/packages/patches/sdl-pango-header-guard.patch: ... this. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/sdl.scm (sdl-pango): Likewise.
2020-04-10gnu: akonadi: Shorten file name of patch.Ludovic Courtès
This ensures we stay below the POSIX tar file name length limit. * gnu/packages/patches/akonadi-Revert-Make-installation-properly-relo.patch: Rename to... * gnu/packages/patches/akonadi-not-relocatable.patch: ... this. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/kde-pim.scm (akonadi): Likewise.
2020-04-10gnu: binutils: Shorten file names of MinGW patches.Ludovic Courtès
This ensures we stay below the POSIX tar file name length limit. * gnu/packages/patches/binutils-mingw-w64-reproducible-import-libraries.patch: Rename to... * gnu/packages/patches/binutils-mingw-w64-deterministic.patch: ... this. * gnu/packages/patches/binutils-mingw-w64-specify-timestamp.patch: Rename to... * gnu/packages/patches/binutils-mingw-w64-timestamp.patch: ... this. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/cross-base.scm (cross-binutils): Likewise.
2020-04-10gnu: sdl-pango: Shorten file name of patch.Ludovic Courtès
* gnu/packages/patches/sdl-pango-fix-explicit-SDLPango_CopyFTBitmapTo.patch: Rename to... * gnu/packages/patches/sdl-pango-header-guard.patch: ... this. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/sdl.scm (sdl-pango): Likewise.
2020-04-10gnu: akonadi: Shorten file name of patch.Ludovic Courtès
This ensures we stay below the POSIX tar file name length limit. * gnu/packages/patches/akonadi-Revert-Make-installation-properly-relo.patch: Rename to... * gnu/packages/patches/akonadi-not-relocatable.patch: ... this. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/kde-pim.scm (akonadi): Likewise.
2020-04-10gnu: binutils: Shorten file names of MinGW patches.Ludovic Courtès
This ensures we stay below the POSIX tar file name length limit. * gnu/packages/patches/binutils-mingw-w64-reproducible-import-libraries.patch: Rename to... * gnu/packages/patches/binutils-mingw-w64-deterministic.patch: ... this. * gnu/packages/patches/binutils-mingw-w64-specify-timestamp.patch: Rename to... * gnu/packages/patches/binutils-mingw-w64-timestamp.patch: ... this. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/cross-base.scm (cross-binutils): Likewise.
2020-04-09installer: Allow Alt+Shift toggle from non-Latin keyboard layouts.Florian Pelz
Fixes <https://bugs.gnu.org/40493>. * gnu/installer/newt/keymap.scm (%non-latin-layouts): New variable. (%non-latin-variants): New variable. (%latin-layout+variants): New variable. (toggleable-latin-layout): New procedure to compute combined layouts. (run-keymap-page): Use it. (keyboard-layout->configuration): Apply it in config.scm. (run-layout-page): Mention Alt+Shift. * gnu/installer/keymap.scm (kmscon-update-keymap): Pass on XKB options. * gnu/installer/record.scm (<installer>): Adjust code comments. * gnu/installer.scm (apply-keymap): Pass on XKB options. (installer-steps): Adjust code comments. * gnu/packages/patches/kmscon-runtime-keymap-switch.patch: Apply XKB options.
2020-04-08gnu: higan: Update to 110.Nicolas Goaziou
* gnu/packages/emulators.scm (higan): Update to 110. [source]: Switch to new repository. [inputs]: Add libxrandr, replace sdl with sdl2. [home-page]: Use new URL. [license]: Switch license. * gnu/packages/patches/higan-remove-march-native-flag.patch: Delete file. * gnu/local.mk: Reflect patch removal.
2020-04-07gnu: icecat: Update to 68.7.0-guix0-preview1 [security fixes].Mark H Weaver
Includes fixes for CVE-2020-6821, CVE-2020-6822, CVE-2020-6825, CVE-2020-6827, and CVE-2020-6828. * gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update. (icecat-source): Update gnuzilla commit, base version, and hashes. * gnu/packages/patches/icecat-makeicecat.patch: Adapt to new version.
2020-04-07gnu: julia: Upgrade to 1.3.1.Nicolò Balzarotti
* gnu/packages/julia.scm (libuv-julia): Upgrade to 2.0.0-1.35b1504. (libunwind-julia): New variable. (llvm-patch): Rename to ... (julia-patch): ... this. Update to 1.3.1. (llvm-julia): Adjust patch-set based on above change. Adjust indent. (julia): Update to 1.3.1. [source]: Add patch. [arguments]: Adjust custom 'prepare-deps (llvm-patch): Rename to ... (julia-patch): ... this. Update to 1.3.1. (llvm-julia): Adjust patch-set based on above change. (julia): Upgrade to 1.3.1. [arguments]: Adjust custom 'prepare-deps phase based on changed inputs. Remove most of 'hardcode-soname-map. Adjust 'fix-include-and-link-paths. Add new 'fix-precompile phase. Adjust custom 'disable-broken-tests phase. Add new 'make-wrapper phase. Adjust make-flags. [inputs]: Add p7zip, mbedtls-apache, curl libssh2. Remove openspecfun, fftw, fftwf, python2-virtualenv, rmath. Replace libunwind with libunwind-julia, custom suitesparse with system suitesparse, custom dsfmt with system dsfmt. [native-search-paths]: Add JULIA_DEPOT_PATH. * gnu/packages/patches/julia-SOURCE_DATE_EPOCH-mtime.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-04-05gnu: mediastreamer2: Move the tester files and HTML doc to separate outputs.Maxim Cournoyer
The tester binary generated gets installed with about 20 MiB of data files, and the HTML documentation weighs another 500 KiB or so. Move them to separate outputs. * gnu/packages/patches/mediastreamer-srtp2.patch: Rename to... * gnu/packages/patches/mediastreamer2-srtp2.patch: ...this, to please 'guix lint'. * gnu/local.mk (dist_patch_DATA): Adapt. * gnu/packages/linphone.scm (mediastreamer2)[patches]: Likewise. [outputs]: Add the "doc" and "tester" outputs. [phases]: Add a phase to move the HTML doc and tester binary and data to the 'doc' and 'tester' outputs, respectively. [description]: Remove the unicode characters surrounding the word 'powerful'.
2020-04-06gnu: mediastreamer2: Enable SRTP2.Raghav Gururajan
* gnu/packages/patches/mediastreamer-srtp2.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/linphone.scm (mediastreamer2)[source]: Use it.
2020-04-04gnu: Add xplanet.R Veera Kumar
* gnu/packages/patches/xplanet-1.3.1-cxx11-eof.patch, gnu/packages/patches/xplanet-1.3.1-libdisplay_DisplayOutput.cpp.patch, gnu/packages/patches/xplanet-1.3.1-libimage_gif.c.patch, gnu/packages/patches/xplanet-1.3.1-xpUtil-Add2017LeapSecond.cpp.patch: New files. * gnu/packages/astronomy.scm (xplanet): New variable. [source]: Use patches. * gnu/local.mk (dist_patch_DATA): Add them. Signed-off-by: Eric Bavier <bavier@member.fsf.org>
2020-04-04gnu: mingw: Add mingw-w64 reproducibility patches.Carl Dong
These patches were originally found at the debian mingw-w64 team's mingw-w64 repo, and should improve the reproducibility of our mingw-w64 toolchain. * gnu/packages/patches/mingw-w64-dlltool-temp-prefix.patch: New file. * gnu/packages/patches/mingw-w64-reproducible-gendef.patch: New file. * gnu/local.mk (dist_patch_DATA): Update accordingly. * gnu/packages/mingw.scm (make-mingw-w64): Apply patches.
2020-04-03gnu: icecat: Update to 68.6.1-guix0-preview1 [security fixes].Mark H Weaver
Includes fixes for CVE-2020-6819 and CVE-2020-6820. * gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update. (icecat-source): Update gnuzilla commit, base version, and hashes. * gnu/packages/patches/icecat-makeicecat.patch: Adapt to new version.
2020-04-03gnu: cross-base: Fix PACKAGE-WITH-EXTRA-PATCHESCarl Dong
This also removes the execute bit from the patches added. Not sure how or why those were set in the first place. * gnu/packages/cross-base.scm (package-with-extra-patches): Imitate PACKAGE-WITH-PATCH instead of using it. * gnu/packages/patches/binutils-mingw-w64-reproducible-import-libraries.patch: Remove execute bit. * gnu/packages/patches/binutils-mingw-w64-specify-timestamp.patch: Remove execute bit.
2020-04-03gnu: calibre: Fix build with python-msgpack >= 1.0.Marius Bakke
* gnu/packages/patches/calibre-msgpack-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/ebook.scm (calibre)[source](patches): Add it.
2020-04-02gnu: cross-base: Add mingw-w64 specific binutils patches.Carl Dong
These patches were originally found at the debian mingw-w64 team's binutils repo, and should improve the reproducibility of our mingw-w64 toolchain. * gnu/packages/patches/binutils-mingw-w64-reproducible-import-libraries.patch: New file. * gnu/packages/patches/binutils-mingw-w64-specify-timestamp.patch: New file. * gnu/local.mk (dist_patch_DATA): Update accordingly. * gnu/packages/cross-base.scm (cross-binutils): Apply relevant patches if target is mingw-w64. (package-with-extra-patches): New procedure.
2020-04-02gnu: sdl2: Update to 2.0.12.Timotej Lazar
* gnu/packages/patches/sdl2-mesa-compat.patch: Delete file. * gnu/packages/sdl.scm (sdl2): Update to 2.0.12. [source]: Drop patch that was included in this release. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2020-04-02gnu: Add beancount.Christopher Lemmer Webber
* gnu/packages/finance.scm (beancount): New variable. * gnu/packages/patches/beancount-disable-googleapis-fonts.patch: New file. * gnu/local.mk: Add it.
2020-04-02gnu: python-aiohttp: Enable testsLars-Dominik Braun
* gnu/packages/python-web.scm (python-aiohttp) [arguments]: Enable tests [native-inputs] Add test dependencies [patches] Add test case patch * gnu/packages/patches/python-aiohttp-3.6.2-no-warning-fail.patch: New file * gnu/local.mk (dist_patch_DATA): Add it Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-31gnu: pam-krb5: Fix CVE-2020-10595.Leo Famulari
* gnu/packages/patches/pam-krb5-CVE-2020-10595.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/admin.scm (pam-krb5)[source]: Use it.
2020-03-30gnu: reprotest: Update to 0.7.14.Vagrant Cascadian
* gnu/packages/diffoscope (reprotest): Update to 0.7.14. * gnu/packages/patches/reprotest-support-guix.patch: Remove file. * gnu/local.mk [dist_patch_DATA]: Update accordingly.
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