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2019-01-25gnu: linkchecker: Fix most test failures.Christopher Baines
Add a patch to skip more tests that require the network. Along with some other changes, this gets all but of one of the tests passing. The remaining test is broken due to a problem with the Python package in Guix, which is fixed by [1] which is currently on the core-updates branch. This patch doesn't work on core-updates due to python2-miniboa not being present. 1: d453b0e11d3f001a8160a7d126fdbf40e45d5042 * gnu/packages/python.scm (linkchecker)[source]: Add patch. [native-inputs]: Add more inputs required for the tests. [arguments]: Enable the tests, move the 'check phase after 'install. Test using the installed software, and use py.test.
2019-01-25superlu-dist: Upgrade to 6.1.0.Eric Bavier
* gnu/packages/patches/superlu-dist-awpm-grid.patch: New file. * gnu/packages/maths.scm (superlu-dist)[source]: Upgrade to 6.0.0. Remove extraneous 'use-modules' in snippet. [build-system]: Change to cmake-build-system. [propagated-inputs]: Replace pt-scotch with pt-scotch32 to match integer sizes. Add "parmetis" input, from pt-scotch32. Move lapack to ... [inputs]: ...here. Add openblas and combinatorial-blas. [arguments]: Replace 'configure' phase with #:configure-flags. Add 'set-c++-standard' and 'omp-setup' phases. Remove 'create-install-directories, 'check', and 'install' phases, which are now handled by cmake. * gnu/local.mk (dist_patch_DATA): Add patch.
2019-01-25scotch: Upgrade to 6.0.6.Eric Bavier
* gnu/packages/maths.scm (scotch): Upgrade to 6.0.6. [source]: Remove patches that have been fixed upstream. [arguments]: Add 'install-metis' phase. [outputs]: New field. (pt-scotch, pt-scotch32)[arguments]: Add 'mpi-setup' phase. Use 'invoke'. * gnu/packages/patches/scotch-graph-diam-64.patch, gnu/packages/patches/scotch-graph-induce-type-64.patch, gnu/packages/patches/scotch-test-threading.patch: Delete files. * gnu/packages/patches/scotch-integer-declarations.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust as necessary.
2019-01-25gnu: Add Combinatorial BLAS.Eric Bavier
* gnu/packages/maths.scm (combinatorial-blas): New variable. * gnu/packages/patches/combinatorial-blas-awpm.patch, gnu/packages/patches/combinatorial-blas-io-fix.patch: New files * gnu/local.mk(dist_patch_DATA): Add them.
2019-01-23gnu: gnucash: Disable the stress-options-test using a phase.Maxim Cournoyer
The qof test is also reinstated; it was failing because the needed locales were not installed. * gnu/packages/patches/gnucash-disable-failing-tests.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Unregister it. * gnu/packages/gnucash.scm (gnucash)[patches]: Remove it. [phases]{disable-stress-options-test}: Implement it using SUBSTITUTES*. {install-locales}: New phase.
2019-01-23gnu: gnucash: Convert price-quotes-perl patch to a phase.Maxim Cournoyer
* gnu/packages/patches/gnucash-price-quotes-perl.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Unregister it. * gnu/packages/gnucash.scm (gnucash)[patches]: Remove it. [phases]{fix-finance-quote-check}: Implement it using SUBSTITUTES*.
2019-01-17gnu: OpenSSH: Fix CVE-2018-20685.Leo Famulari
* gnu/packages/patches/openssh-CVE-2018-20685.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/ssh.scm (openssh)[source]: Use it.
2019-01-17gnu: kmscon: Add runtime keymap update support.Mathieu Othacehe
* gnu/packages/patches/kmscon-runtime-keymap-switch.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/terminals.scm (kmscon)[source]: Add patch.
2019-01-16gnu: kodi: Skip failing test.Efraim Flashner
* gnu/packages/kodi.scm (kodi)[source]: Add patch. * gnu/packages/patches/kodi-skip-test-449.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2019-01-14gnu: libssh: Update to 0.8.6.Ludovic Courtès
* gnu/packages/patches/libssh-hostname-parser-bug.patch: Remove. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/ssh.scm (libssh): Update to 0.8.6. [source](patches): Remove. [arguments]: Add #:phases. (guile-ssh)[source](modules, snippet]: New fields.
2019-01-14gnu: opencv: Loosen test suite failures.Efraim Flashner
* gnu/packages/image-processing.scm (opencv)[native-inputs]: Add patch to opencv-contrib. [arguments]: Update 'unpack-submodule-sources phase. * gnu/packages/patches/opencv-rgbd-aarch64-test-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2019-01-11gnu: kinit: Use KDEINIT5_LIBRARY_PATH to search for dynlibs.Hartmut Goebel
Using LIBRARY_PATH was introduced in 16b8aff85bcdb9799496c4a27257210cd45158e5, but is wrong since this variable is used by the compiler (gcc) at link time. * gnu/packages/patches/kinit-kdeinit-libpath.patch: Change LIBRARY_PATH to KDEINIT5_LIBRARY_PATH. * gnu/packages/kde-frameworks.scm (kinit)[native-search-paths]: New field.
2019-01-10gnu: Add docker.Danny Milosavljevic
* gnu/packages/docker.scm (docker): New variable. * gnu/packages/patches/docker-engine-test-noinstall.patch: New file. * gnu/packages/patches/docker-fix-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add them.
2019-01-09gnu: aria2: Fix CVE-2019-3500.Leo Famulari
* gnu/packages/patches/aria2-CVE-2019-3500.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/bittorrent.scm (aria2)[source]: Use it.
2019-01-07gnu: biber: Update to 2.12.Jelle Licht
* gnu/packages/tex.scm (biber): Update to 2.12. [source]: Use 'git-fetch'. Add patch. [inputs]: Add perl-file-slurper. Remove perl-file-slurp. * gnu/packages/patches/biber-fix-encoding-write.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2019-01-07gnu: libarchive: Replace with libarchive 3.3.3 and fix ↵Alex Vong
CVE-2018-{1000877,1000878,1000880}. * gnu/packages/backup.scm (libarchive)[source, home-page]: Use HTTPS. [replacement]: New field. (libarchive-3.3.3): New variable. * gnu/packages/patches/libarchive-CVE-2018-1000877.patch, gnu/packages/patches/libarchive-CVE-2018-1000878.patch, gnu/packages/patches/libarchive-CVE-2018-1000880.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them.
2019-01-06gnu: unrtf: Update to 0.21.10.Efraim Flashner
* gnu/packages/unrtf.scm (unrtf): Update to 0.21.10. [source]: Remove patch, remove snippet. [license]: Update to gpl3+. * gnu/packages/patches/unrtf-CVE-2016-10091.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-01-05gnu: streamlink: Fix build.Efraim Flashner
* gnu/packages/video.scm (streamlink)[source]: Add patch. * gnu/packages/patches/streamlink-update-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2019-01-04gnu: kpackage: Transfer patches from NixOS.Hartmut Goebel
Transfer the NixOS patches for kpackage as of 2018-02-17: - Allow external paths. - Make QDirIterator follow symlinks. Decided to use a patch for one of the "allow external paths" changes since 'substitute*' seems not to be robust enough. * gnu/packages/patches/kpackage-allow-external-paths.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/kde-frameworks.scm(kpackage)[source]: Use it. <patch>: New phase.
2019-01-04gnu: kinit: Use LIBRARY_PATH to search for dynamically loaded libs.Hartmut Goebel
Transfer the NixOS "kdeinit-libpath" patch for kinit as of 2018-02-17. * gnu/packages/patches/kinit-kdeinit-libpath.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/kde-frameworks.scm (kinit)[source]: Use it.
2019-01-04gnu: kinit: Use the store paths for dynamically loaded libs.Hartmut Goebel
Transfer the NixOS "kdeinit-extra_libs" patch for kinit as of 2018-02-17. * gnu/packages/patches/kinit-kdeinit-extra_libs.patch: New filee. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/kde-frameworks.scm (kinit)[source]: Use it. <patch-paths>: New phase. [inputs]: Add kparts, plasma-framework.
2019-01-04gnu: kio: Search 'smbd' on $PATH.Hartmut Goebel
Transfer the remaining NixOS patch for kio as of 2018-02-17. * gnu/packages/patches/kio-search-smbd-on-PATH.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/kde-frameworks.scm(kio)<source>: Use it.
2019-01-04gnu: libextractor: Fix CVE-2018-{20430,20431}.Alex Vong
* gnu/packages/patches/libextractor-CVE-2018-20430.patch, gnu/packages/patches/libextractor-CVE-2018-20431.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/gnunet.scm (libextractor)[source]: Use them.
2019-01-03gnu: vboot-utils: Fix building on armhf-linux.Kei Kebreau
* gnu/packages/bootloaders.scm (vboot-utils)[source]: Add patches. [arguments]: Conditionally add "HOST_ARCH=arm" to #:make-flags. * gnu/packages/patches/vboot-utils-fix-format-load-address.patch, gnu/packages/patches/vboot-utils-fix-tests-show-contents.patch, gnu/packages/patches/vboot-utils-skip-test-workbuf.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them.
2019-01-02gnu: gnucash: Fix test failure.Maxim Cournoyer
Fixes issue #32057 (see: https://issues.guix.info/issue/32057). * gnu/packages/patches/gnucash-fix-test-transaction-failure.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/gnucash.scm (gnucash): Use it.
2019-01-02gnu: owncloud-client: Update to 2.5.1.10973.Efraim Flashner
* gnu/packages/sync.scm (owncloud-client): Update to 2.5.1.10973. * gnu/packages/patches/owncloud-disable-updatecheck.patch: Update patch.
2018-12-30gnu: vinagre: Update package for newer freerdp.Efraim Flashner
* gnu/packages/gnome.scm (vinagre)[source]: Update patches. [arguments]: Add custom phase to replace 'freerdp' with 'freerdp2'. Remove configure flags. * gnu/packages/patches/vinagre-revert-1.patch, gnu/packages/patches/vinagre-revert-2.patch: Remove files. * gnu/packages/patches/vinagre-newer-freerdp.patch, gnu/packages/patches/vinagre-newer-rdp-parameters.patch: New files. * gnu/local.mk (dist_patch_DATA): Register changes.
2018-12-24gnu: file: Fix CVE-2018-10360.Efraim Flashner
* gnu/packages/patches/file-CVE-2018-10360.patch: New file. * gnu/packages/file.scm (file)[replacement]: New field. (file/fixed): New variable. * gnu/packages/commencement.scm (file-boot0): Use 'package/inherit' to receive security fixes. * gnu/local.mk (dist_patch_DATA): Register it.
2018-12-23gnu: datamash: Update to 1.4.Efraim Flashner
* gnu/packages/datamash.scm (datamash): Update to 1.4. [source]: Remove patch. * gnu/packages/patches/datamash-arm-tests.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2018-12-21gnu: Add emacs-wordnut.Mathieu Othacehe
* gnu/packages/patches/emacs-wordnut-require-adaptive-wrap.patch: New file. * gnu/local.mk (dist_patch_DATA): Add previous file. * gnu/packages/emacs.scm (emacs-wordnut): New package.
2018-12-20gnu: meandmyshadow: Update to 10.5a.Kei Kebreau
* gnu/packages/games.scm (meandmyshadow): Update to 10.5a. [source]: Remove patch. * gnu/local.mk (dist_patch_DATA): Unregister patch. * gnu/packages/patches/meandmyshadow-define-paths-earlier.patch: Delete file.
2018-12-19gnu: stumpwm: Fix gnew command.Pierre Langlois
The new release of StumpWM broken the interactive 'gnew' command. It was fixed upstream [0] and will be part of the next release. 0: https://github.com/stumpwm/stumpwm/pull/538 * gnu/packages/patches/stumpwm-fix-broken-read-one-line.patch: New file. * gnu/packages/lisp.scm (stumpwm)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Register it.
2018-12-18gnu: ansible: Work around issues with Guix wrapper scripts.Arun Isaac
* gnu/packages/admin.scm (ansible)[source]: Remove ansible-wrap-program-hack.patch from patches. [arguments]: Add hide-wrapping and fix-symlinks phases. * gnu/packages/patches/ansible-wrap-program-hack.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Unregister it.
2018-12-16gnu: glibc: Add patch implementing "pid/…" magic lookup on the Hurd.Ludovic Courtès
This patch is missing from glibc 2.28 and is needed to support /proc/self lookup when using the Hurd's procfs, which in turn is needed for our 'guile-relocatable.patch'. See <https://lists.gnu.org/archive/html/bug-hurd/2018-12/msg00024.html>. * gnu/packages/patches/glibc-hurd-magic-pid.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/base.scm (glibc)[arguments]: Add 'apply-hurd-patch' phase. [native-inputs]: Add "hurd-magic-pid-patch" input. * gnu/packages/cross-base.scm (cross-libc)[arguments]: Duplicate 'apply-hurd-patch' phase.
2018-12-13gnu: qemu: Update to 3.1.0.Rutger Helling
* gnu/packages/virtualization.scm (qemu): Update to 3.1.0. [source]: Remove obsolete patches. * gnu/packages/patches/qemu-CVE-2018-16847.patch, gnu/packages/patches/qemu-CVE-2018-16867.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them.
2018-12-12gnu: allegro: Fix compilation with Mesa >= 18.2.5.Rutger Helling
* gnu/packages/game-development.scm (allegro)[source]: Add allegro-fix-compilation-mesa-18.2.5-and-later.patch. * gnu/packages/patches/allegro-fix-compilation-mesa-18.2.5-and-later.patch: New file.
2018-12-10gnu: Borg: Update to 1.1.8.Leo Famulari
* gnu/packages/backup.scm (borg): Update to 1.1.8. [source]: Remove obsolete patch. * gnu/packages/patches/borg-respect-storage-quota.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2018-12-09gnu: openjdk: Make idlj respect SOURCE_DATE_EPOCH.Gábor Boskovits
* gnu/packages/patches/openjdk-10-idlj-reproducibility.patch: New file. * gnu/packages/java.scm (openjdk10)[source]: Use it. * gnu/locale.mk (dist_patch_DATA): Register it.
2018-12-09gnu: polkit: Fix CVE-2018-19788.Leo Famulari
* gnu/packages/patches/polkit-CVE-2018-19788.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/polkit.scm (polkit)[source]: Use it.
2018-12-08gnu: GCC@6: Update to 6.5.0.Marius Bakke
* gnu/packages/patches/gcc-libsanitizer-fix.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/gcc.scm (gcc-6): Update to 6.5.0. [source](patches): Drop obsolete patches. [source](snippet): Remove.
2018-12-07Merge branch 'version-0.16.0'Ludovic Courtès
2018-12-06gnu: QEMU: Fix CVE-2018-16847 and CVE-2018-16867.Leo Famulari
* gnu/packages/patches/qemu-CVE-2018-16847.patch, gnu/packages/patches/qemu-CVE-2018-16867.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/virtualization.scm (qemu)[source]: Use them.
2018-12-06gnu: elogind: Update to 239.2.Stefan Stefanović
* gnu/packages/freedesktop.scm (elogind): Update to 239.2. [source](patches): Remove elogind-glibc-2.27.patch. [source](snippet): Remove snippet. [arguments]: <#:tests?>: Enable tests. <#:configure-flags>: Adjust build paths. Disable some tests. <#:make-flags>: Remove argument. <#:phases>[patch-locale-header]: Remove phase. <#:phases>[clean-runpath]: Add phase. <#:phases>[bootstrap]: Remove phase. <#:phases>[fix-pkttyagent-path]: Add phase. <#:phases>[fix-service-file]: Remove phase. <#:phases>[add-libcap-to-search-path]: Remove phase. <#:phases>[remove-uaccess-tag]: Remove phase. <#:phases>[change-pid-file-path]: Add phase. [build-system]: Switch to meson-build-system. [native-inputs]: Sort native-inputs list. Remove gperf package version constraint. Remove: autoconf, automake, libtool, intltool. Add: docbook-xml-4.2. [inputs]: Remove: linux-libre-headers. * gnu/packages/patches/elogind-glibc-2.27.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove patch file. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-12-05gnu: quilt: Use shorter file names for patches.Ludovic Courtès
We were reaching the 99-character limit of POSIX tar. * gnu/packages/patches/quilt-compat-getopt-fix-option-with-nondigit-param.patch: Rename to... * gnu/packages/patches/quilt-getopt-nondigit-param.patch: ... this. * gnu/packages/patches/quilt-compat-getopt-fix-second-separator.patch: Rename to... * gnu/packages/patches/quilt-getopt-second-separator.patch: ... this. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/patchutils.scm (quilt)[source](patches): Likewise.
2018-12-03gnu: Beets: Fix compatibility with Python 3.7.Leo Famulari
* gnu/packages/patches/beets-python-3.7-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/music.scm (beets)[source]: Use it.
2018-12-03Merge branch 'core-updates'Ludovic Courtès
2018-12-01handbrake: Update to 1.1.2.Eric Bavier
* gnu/packages/video.scm (handbrake): Update to 1.1.2. [source]: Use direct download url. Remove upstreamed patch. Patch make fragments in snippet. [inputs]: Use latest ffmpeg. Add jansson and opus. [arguments]: Remove 'disable-contrib phase, which is now in source snippet. Move 'fix-x265-linking phase fix to #:configure-flags. [license]: Use 'gpl2' as clarified in LICENSE. * gnu/packages/patches/handbrake-pkg-config-path.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2018-11-30gnu: blender: Use newer ffmpeg.Efraim Flashner
* gnu/packages/graphics.scm (blender)[source]: Add patch for newer ffmpeg compatability. [inputs]: Replace ffmpeg-2.8 with ffmpeg. * gnu/packages/patches/blender-newer-ffmpeg.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2018-11-30patchutils: Update to 0.3.4.Eric Bavier
* gnu/packages/patchutils.scm (patchutils): Update to 0.3.4. [arguments]: Simplify 'patch-test-scripts' phase. * gnu/packages/patches/patchutils-xfail-gendiff-tests.patch: Rename to... * gnu/packages/patches/patchutils-test-perms.patch: ...this. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2018-11-29Merge branch 'master' into core-updatesMarius Bakke
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