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2020-08-11gnu: clang-runtime-3.5: Fix build.Ricardo Wurmus
* gnu/packages/patches/clang-runtime-3.5-libsanitizer-mode-field.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/llvm.scm (clang-runtime-3.5): Add patch.
2020-08-09gnu: python-alembic: Update to 1.4.2.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (python-alembic): Update to 1.4.2. [source]: Remove patch. * gnu/packages/patches/python-alembic-exceptions-cause.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2020-08-08gnu: lib2geom: Update to commit 17e0d21f.Maxim Cournoyer
* gnu/packages/patches/lib2geom-enable-assertions.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Unregister it. * gnu/packages/graphics.scm (lib2geom): Update to commit 17e0d21f0afc8489656f9184bff7ad024a42394a, and remove obsolete patch.
2020-08-06gnu: json-c: Fix CVE-2020-12762.Efraim Flashner
* gnu/packages/web.scm (json-c)[replacement]: New field. (json-c-0.13, json-c-0.12)[source]: Add patch. (json-c/fixed): New variable. * gnu/packages/patches/json-c-CVE-2020-12762.patch, gnu/packages/patches/json-c--0.13-CVE-2020-12762.patch, gnu/packages/patches/json-c--0.12-CVE-2020-12762.patch: New files. * gnu/local.mk (dist_patch_DATA): Register them.
2020-08-05gnu: pjproject: Update the pkg-config patch.Maxim Cournoyer
* gnu/packages/patches/pjproject-fix-pkg-config-ldflags.patch: Update patch.
2020-08-03gnu: pjproject: Fix problem in pkg-config file.Maxim Cournoyer
* gnu/packages/patches/pjproject-correct-the-cflags-field.patch: Add patch. * gnu/packages/patches/pjproject-fix-pkg-config-ldflags.patch: Likewise. * gnu/local.mk (dist_patch_DATA): Register the new patches. * gnu/packages/telephony.scm (pjproject): Use them. * gnu/packages/jami.scm (pjproject-jami): Remove a patch from pjproject-jami that is already applied against pjproject.
2020-08-03gnu: emacs: Ignore empty XIM styles.Leo Prikler
As of libx11 version 1.6.10, xim may be NULL, which causes a segmentation fault in the execution of ARRAYELTS. As a cautionary measure, we short-circuit this logic. * gnu/packages/patches/emacs-ignore-empty-xim-styles.patch: New file. * gnu/packages/emacs.scm (emacs emacs-next)[patches]: Use it. * gnu/local.mk: Register it. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-08-03gnu: Add python-onnx.Vinicius Monego
* gnu/packages/machine-learning.scm (python-onnx): New variable. * gnu/packages/patches/python-onnx-use-system-googletest.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-08-01gnu: Add Remake.Eric Bavier
* gnu/packages/debug.scm (remake): New variable. * gnu/packages/patches/remake-impure-dirs.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2020-08-01gnu: xorg-server: Fix CVE-2020-14347 via graft.Mark H Weaver
* gnu/packages/patches/xorg-server-CVE-2020-14347.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/xorg.scm (xorg-server/fixed): New variable. (xorg-server)[replacement]: New field. (xorg-server-wayland): Use package/inherit.
2020-07-31gnu: Add blender@2.79b.Mark H Weaver
Restore blender@2.79b, the last version that does not require OpenGL 3, and therefore the last version to work on many older computers. Note that this commit relies on blender-2.79-newer-ffmpeg.patch and blender-2.79-python-3.7-fix.patch, which were left in the tree when blender@2.79b was previously removed in commit 1f14453eedfede4626a78321c66a009c9997bee4. * gnu/packages/patches/blender-2.79-gcc8.patch, gnu/packages/patches/blender-2.79-gcc9.patch, gnu/packages/patches/blender-2.79-oiio2.patch, gnu/packages/patches/blender-2.79-python-3.8-fix.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/graphics.scm (blender-2.79): New variable.
2020-07-31gnu: Add bpftrace.John Soo
* gnu/packages/linux.scm (bpftrace): New variable. * gnu/packages/patches/bpftrace-disable-bfd-disasm.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-07-30gnu: python-slugify: Update to 4.0.1.Tanguy Le Carrour
* gnu/packages/patches/python-slugify-depend-on-unidecode.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/python-web.scm (python-slugify): Update to 4.0.1. [source] Drop patch. Signed-off-by: Marius Bakke <marius@gnu.org>
2020-07-30gnu: Add nfs4-acl-tools.Lars-Dominik Braun
* gnu/packages/nfs.scm (nfs4-acl-tools): New variable. * gnu/packages/patches/nfs4-acl-tools-0.3.7-fixpaths.patch: New file. * gnu/local.mk: Add it. Signed-off-by: Marius Bakke <marius@gnu.org>
2020-07-29gnu: sphinxbase: Fix building.Efraim Flashner
* gnu/packages/speech.scm (sphinxbase)[source]: Add patch. * gnu/packages/patches/sphinxbase-fix-doxygen.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2020-07-29gnu: Add rnp.Justus Winter
* gnu/packages/openpgp.scm (rnp): New variable. * gnu/packages/patches/rnp-add-version.cmake.patch: New file. * gnu/packages/patches/rnp-disable-ruby-rnp-tests.patch: New file. * gnu/packages/patches/rnp-unbundle-googletest.patch: New file. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-07-29gnu: libextractor: Update to 1.10.Michael Rohleder
* gnu/packages/gnunet.scm (libextractor): Update to 1.10. [arguments]: Add 'fix-exiv2-tests' phase. [inputs]: Add GIFLIB, remove TIDY-HTML. * gnu/packages/patches/libextractor-exiv2.patch: Remove. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-07-28gnu: icecat: Update to 68.11.0-guix0-preview1 [security-fixes].Mark H Weaver
Includes fixes for CVE-2020-6463, CVE-2020-6514, CVE-2020-15652, and CVE-2020-15659. * gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update. (icecat-source): Update gnuzilla commit, base version, and hashes. * gnu/packages/patches/icecat-makeicecat.patch: Adapt to new version.
2020-07-28gnu: lib2geom: Fix more tests.Maxim Cournoyer
There were still two tests failing on aarch64-linux: 1. rotated-rect-test, 2. ellipse-test. The first one was removed along with the RotatedRect class in latest upstream, while the second one is yet numerical accuracy related. It gets fixed by updating the already existing 'lib2geom-fix-tests' patch. * gnu/packages/graphics.scm (lib2geom): Bump revision to "2", and update commit hash to the latest one available. * gnu/packages/patches/lib2geom-fix-tests.patch: Update patch.
2020-07-27gnu: plotutils: Fix build on non-x86_64 architectures.Maxim Cournoyer
* gnu/packages/patches/plotutils-spline-test.patch: Add patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/plotutils.scm (plotutils)[patches]: Apply it.
2020-07-27gnu: python-jedi: Update to 0.17.2.Tobias Geerinckx-Rice
* gnu/packages/python-xyz.scm (python-jedi): Update to 0.17.2. [source, arguments]: Remove upstreamed patching. * gnu/packages/patches/python-jedi-sort-project-test.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2020-07-26gnu: glibc: Remove old versions.Marius Bakke
* gnu/packages/patches/glibc-CVE-2015-5180.patch, gnu/packages/patches/glibc-CVE-2015-7547.patch, gnu/packages/patches/glibc-CVE-2016-3075.patch, gnu/packages/patches/glibc-CVE-2016-3706.patch, gnu/packages/patches/glibc-CVE-2016-4429.patch, gnu/packages/patches/glibc-CVE-2017-1000366-pt1.patch, gnu/packages/patches/glibc-CVE-2017-1000366-pt2.patch, gnu/packages/patches/glibc-CVE-2017-1000366-pt3.patch, gnu/packages/patches/glibc-o-largefile.patch, gnu/packages/patches/glibc-vectorized-strcspn-guards.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/base.scm (glibc-2.26, glibc-2.25, glibc-2.24, glibc-2.23, glibc-2.22): Remove variables.
2020-07-24gnu: luminance-hdr: Update to 2.6.0.Marius Bakke
* gnu/packages/patches/luminance-hdr-qt-printer.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/image-viewers.scm (luminance-hdr): Update to 2.6.0. [inputs]: Add QTSVG and EIGEN. [arguments]: Add #:tests? #f.
2020-07-23gnu: Fix Krita.Leo Famulari
Fixes <https://bugs.gnu.org/42476>. Reported by linka on #guix. * gnu/packages/patches/qtbase-fix-krita-deadlock.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/qt.scm (qtbase-for-krita): New variable. * gnu/packages/kde.scm (krita)[inputs]: Replace qtbase with qtbase-for-krita.
2020-07-23Revert "gnu: Fix Krita."Leo Famulari
This reverts commit 5f63905096e456097fca206f56ce9257f72faf64. This commit caused `guix pull` to crash like this: ------ Backtrace: In ice-9/boot-9.scm: 222:29 19 (map1 _) 222:29 18 (map1 _) 222:29 17 (map1 _) 222:29 16 (map1 _) 222:17 15 (map1 (((gnu packages kde)) ((gnu packages libevent)) ((gnu packages libidn)) ((gnu packages #)) ((?)) ?)) 3297:17 14 (resolve-interface (gnu packages kde) #:select _ #:hide _ #:prefix _ #:renamer _ #:version _) In ice-9/threads.scm: 390:8 13 (_ _) In ice-9/boot-9.scm: 3223:13 12 (_) In ice-9/threads.scm: 390:8 11 (_ _) In ice-9/boot-9.scm: 3507:20 10 (_) 2806:4 9 (save-module-excursion _) 3527:26 8 (_) In unknown file: 7 (primitive-load-path "gnu/packages/kde" #<procedure 7f68d6fe5da0 at ice-9/boot-9.scm:3514:37 ()>) In ice-9/eval.scm: 626:19 6 (_ #<directory (gnu packages kde) 7f68d6175b40>) 293:34 5 (_ #<directory (gnu packages kde) 7f68d6175b40>) 173:47 4 (_ #(#<directory (gnu packages kde) 7f68d6175b40> #<promise #<procedure 7f68dc5a5d00 at ice-9/eval.sc?>)) 159:9 3 (_ #(#<directory (gnu packages kde) 7f68d6175b40> #<promise #<procedure 7f68dc5a5d00 at ice-9/eval.sc?>)) 191:35 2 (_ #(#<directory (gnu packages kde) 7f68d6175b40> #<promise #<procedure 7f68dc5a5d00 at ice-9/eval.sc?>)) 223:20 1 (proc #(#<directory (gnu packages kde) 7f68d6175b40> #<promise #<procedure 7f68dc5a5d00 at ice-9/eval?>)) In unknown file: 0 (%resolve-variable (7 . qtbase) #<directory (gnu packages kde) 7f68d6175b40>) ERROR: In procedure %resolve-variable: error: qtbase: unbound variable ------
2020-07-23gnu: Fix Krita.Leo Famulari
Fixes <https://bugs.gnu.org/42476>. Reported by linka on #guix. * gnu/packages/patches/qtbase-fix-krita-deadlock.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/kde.scm (qtbase-for-krita): New variable. (krita)[inputs]: Replace qtbase with qtbase-for-krita.
2020-07-23gnu: linux-libre@4.14: Update to 4.14.189.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.189. (linux-libre-4.14-pristine-source): Update hash. (linux-libre-4.14-source): Remove %linux-libre-fix-atheros-9271-patch. (deblob-scripts-4.14): Update to 4.14.189. (%linux-libre-fix-atheros-9271-patch): Delete variable. * gnu/packages/patches/linux-libre-fix-atheros-9271.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2020-07-22arb: Update to 2.18.1.Andreas Enge
* gnu/packages/patches/arb-flint-2.6.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/algebra.scm (arb): Update to 2.18.1. [source](patches): Remove.
2020-07-21gnu: Add intel-xed.B. Wilson
* gnu/packages/assembly.scm (intel-xed): New variable. * gnu/packages/patches/intel-xed-fix-nondeterminism.patch: New file. * gnu/local.mk (dist_patch_DATA): Add reference to new patch. Signed-off-by: Marius Bakke <marius@gnu.org>
2020-07-21gnu: libvnc: Update to 0.9.13.Marius Bakke
* gnu/packages/patches/libvnc-CVE-2018-20750.patch, gnu/packages/patches/libvnc-CVE-2019-15681.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/vnc.scm (libvnc): Update to 0.9.13. [source](patches): Remove. [arguments]: Add phase to patch 'cc' invocation.
2020-07-21gnu: emacs-telega: Patch to use telega-server from Guix.Brett Gilio
* gnu/packages/patches/emacs-telega-patch-server-functions.patch: New file. * gnu/local.mk (dist_patch_DATA): Reference new patch. * gnu/packages/emacs-xyz.scm (emacs-telega)[source]: Use new patch, bump revision.
2020-07-20gnu: python-aionotify: Fix test cases with Python 3.8.Lars-Dominik Braun
* gnu/packages/python-xyz.scm (patches): Add fix. * gnu/packages/patches/python-aionotify-0.2.0-py3.8.patch: New file. * gnu/local.mk: Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-07-19gnu: ungoogled-chromium: Update to 84.0.4147.89-0.df199c0.Marius Bakke
* gnu/packages/patches/ungoogled-chromium-system-jsoncpp.patch, gnu/packages/patches/ungoogled-chromium-system-zlib.patch: Delete files. * gnu/packages/patches/ungoogled-chromium-system-nspr.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for 84. (%ungoogled-revision): Set to df199c04ff367da59ce52a23a3f3b305dd3b00c3. (%debian-revision): Set to debian/83.0.4103.116-3. (%gentoo-revision): Set to f3f649046d31ebdbc8c4a302b2384504eff78027. (chromium-gcc-patchset, %chromium-gcc-patches): New variables. (%gentoo-patches): Remove GCC patches, which have been moved to the above repo. Add ffmpeg compatibility patch. (%debian-patches): Add zlib and jsoncpp patch; remove nspr patch. (%ungoogled-origin): Update hash. (ungoogled-chromium-snippet): Add the new GCC patches. Remove obsolete local patches, add new. (xcb-proto/python2): New variable. (ungoogled-chromium): Update to 84.0.4147.89-0..df199c0. [arguments]: Add "is_unsafe_developer_build", "max_jobs_per_link", "exclude_unwind_tables", "xcbproto_path", "perfetto_use_system_protobuf" to #:configure-flags. Remove "linux_use_bundled_binutils". Adjust vulkan header substitutions. [native-inputs]: Remove YASM. [inputs]: Change from FFMPEG-4.2 to FFMPEG. Add PROTOBUF and XCB-PROTO/PYTHON2.
2020-07-17gnu: ruby-rubocop: Update to 0.88.0.Maxim Cournoyer
* gnu/packages/patches/ruby-rubocop-break-dependency-cycle.patch: New file. * gnu/local.mk (dist_patch_DATA): Register patch. * gnu/packages/ruby.scm (ruby-rubocop): Update to 0.88.0. [origin]: Use git-fetch. Apply the newly added patch. [arguments]: Set #:test-target to "default". Remove #:tests?, enabling tests. [phases]{remove-problematic-tests, disable-bundler, set-home, make-adoc-files-writable}: New phases. Replace the 'replace-git-ls-files phase. [native-inputs]: Add ruby-bump, ruby-pry, ruby-rspec, ruby-test-queue, ruby-webmock-2 and ruby-yard. [propagated-inputs]: Remove ruby-powerpack and ruby-jaro-winkler. Add ruby-regexp-parser, ruby-rexml and ruby-rubocop-ast.
2020-07-17gnu: Add Rust 1.45.Jakub Kądziołka
* gnu/packages/rust.scm (rust-1.45): New variable. * gnu/packages/patches/rust-1.45-linker-locale.patch: New file. * gnu/local.mk (dist_patch_DATA): Add the patch to the list.
2020-07-17gnu: Add maven-enforcer-api.Julien Lepiller
* gnu/packages/maven.scm (maven-enforcer-api): New variable. * gnu/packages/patches/maven-enforcer-api-fix-old-dependencies.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2020-07-17gnu: emacs-exwm: Fix fullscreen states.Diego Nicola Barbato
* gnu/packages/patches/emacs-exwm-fix-fullscreen-states.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/emacs-xyz.scm (emacs-exwm)[source]: Use it. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-07-16gnu: Add ganeti.Marius Bakke
* gnu/packages/virtualization.scm (system->qemu-target, ganeti): New variables. * gnu/packages/patches/ganeti-deterministic-manual.patch, gnu/packages/patches/ganeti-disable-version-symlinks.patch, gnu/packages/patches/ganeti-drbd-compat.patch, gnu/packages/patches/ganeti-haskell-pythondir.patch, gnu/packages/patches/ganeti-os-disk-size.patch, gnu/packages/patches/ganeti-preserve-PYTHONPATH.patch, gnu/packages/patches/ganeti-shepherd-master-failover.patch, gnu/packages/patches/ganeti-shepherd-support.patch: New files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2020-07-16gnu: Add tao.Ricardo Wurmus
* gnu/packages/patches/tao-add-missing-headers.patch, gnu/packages/patches/tao-fix-parser-types.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/audio.scm (tao): New variable.
2020-07-15gnu: Transmission: Update to 3.0.0.Leo Famulari
* gnu/packages/bittorrent.scm (transmission): Update to 3.0.0. [source]: Remove obsolete patch. * gnu/packages/patches/transmission-CVE-2018-10756.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2020-07-15gnu: python-tinycss2: Fix test failure.Marius Bakke
Fixes <https://bugs.gnu.org/42372>. Reported by Michael Rohleder <mike@rohleder.de>. * gnu/packages/patches/python-tinycss2-flake8-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/python-web.scm (python-tinycss2)[source](patches): New field.
2020-07-15gnu: python-shiboken-2, python-pyside-2: Update to 5.14.2.3.Marius Bakke
* gnu/packages/patches/qtbase-absolute-runpath.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/qt.scm (qtbase/next): New variable. * gnu/packages/qt.scm (python-shiboken-2): Update to 5.14.2.3. [source](uri): Adjust for tarball rename. [inputs]: Use the default CLANG-TOOLCHAIN. (python-pyside-2)[inputs]: Likewise. (python-pyside-2-tools)[inputs]: Change from QTBASE to QTBASE/NEXT.
2020-07-13gnu: xpra: Upgrade to 4.0.2.Lars-Dominik Braun
* gnu/packages/xorg.scm (xpra)[version]: Upgrade. [source]: Add patch. [inputs]: Adjust to use Python 3 dependencies. [arguments]: Use Python 3, add phases to patch hardcoded binary paths. * gnu/local.mk (dist_patch_DATA): Add patch. * gnu/packages/patches/xpra-4.0.1-systemd-run.patch: New file. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-07-13gnu: libreoffice: Update to 6.4.5.2.Efraim Flashner
* gnu/packages/libreoffice.scm (libreoffice): Update to 6.4.5.2. [source]: Remove patch. * gnu/packages/patches/libreoffice-poppler-compat.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2020-07-12gnu: opendht: Add patch.Jan Wielkiewicz
The 2.1.4 release of opendht contains a bug, preventing it's use with recent releases of Jami. This minor patch [1] resolves this issue, and should be possible to remove with the next release. 1: https://github.com/savoirfairelinux/opendht/commit/e2b39dd3a0742853e00f9c3e8c46c911da20bed7 * gnu/packages/patches/opendht-fix-jami.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/networking.scm (opendht)[source]: Apply the patch. Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-07-11gnu: sqlite: Add locking-mode fix for the Hurd.Jan (janneke) Nieuwenhuizen
* gnu/packages/patches/sqlite-hurd.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/sqlite.scm (sqlite)[native-inputs]: Add it when building for the Hurd. [arguments]: Apply it when building for the Hurd.
2020-07-10gnu: Add ECL 16.1.3 for Sage.Jakub Kądziołka
* gnu/packages/sagemath.scm (ecl-16): New variable. * gnu/packages/patches/ecl-16-format-directive-limit.patch, gnu/packages/patches/ecl-16-ignore-stderr-write-error.patch, gnu/packages/patches/ecl-16-libffi.patch: New files. * gnu/local.mk (dist_patch_DATA): Register the patches.
2020-07-10gnu: linbox: Fix linking of dependant packages.Jakub Kądziołka
* gnu/packages/algebra.scm (linbox)[source]: Add a patch. [inputs]: Move fflas-ffpack to... [propagated-inputs]: ...here. * gnu/packages/patches/linbox-fix-pkgconfig.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2020-07-10gnu: arb: Build with flint 2.6.Jakub Kądziołka
Backport an upstream patch to fix a compatibility issue with flint 2.6. * gnu/packages/algebra.scm (arb): Add patch. * gnu/packages/patches/arb-flint-2.6.patch: New file. * gnu/local.mk (dist_patch_DATA): Register new file.
2020-07-10gnu: flint: Update to 2.6.0.Jakub Kądziołka
* gnu/packages/algebra.scm (flint): Update to 2.6.0. * gnu/packages/patches/flint-ldconfig.patch: Remove the patch as it got applied upstream. * gnu/local.mk (dist_patch_DATA): Deregister the removed file.
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