Age | Commit message (Collapse) | Author |
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* gnu/packages/python-science.scm (python-distributed): Update to 2023.4.1.
[source]: Remove snippet.
[arguments]: Update build phase 'versioneer; restore 'sanity-check phase;
simplify custom 'check phase; add 'fix-pytest-config phase; use #:test-flags.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-importlib-metadata.
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* gnu/packages/patches/python-scikit-optimize-1148.patch,
gnu/packages/patches/python-scikit-optimize-1150.patch: New patches.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/python-science.scm (python-scikit-optimize)[source]: Fetch with
git and apply patches.
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* gnu/packages/python-science.scm (python-bottleneck)[arguments]: Adjust
custom 'check phase to honor the #:tests? flag.
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* gnu/packages/python-science.scm (python-bottleneck): Update to 1.3.7.
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* gnu/packages/python-science.scm (python-distributed)[build-system]: Use
pyproject-build-system.
[arguments]: Hide deprecation warnings from tornado, because they break almost
all tests; disable three more tests.
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Conflicts:
gnu/local.mk
gnu/packages/build-tools.scm
gnu/packages/certs.scm
gnu/packages/check.scm
gnu/packages/compression.scm
gnu/packages/cups.scm
gnu/packages/fontutils.scm
gnu/packages/gnuzilla.scm
gnu/packages/guile.scm
gnu/packages/ibus.scm
gnu/packages/image-processing.scm
gnu/packages/linux.scm
gnu/packages/music.scm
gnu/packages/nss.scm
gnu/packages/pdf.scm
gnu/packages/python-xyz.scm
gnu/packages/qt.scm
gnu/packages/ruby.scm
gnu/packages/shells.scm
gnu/packages/tex.scm
gnu/packages/video.scm
gnu/packages/vulkan.scm
gnu/packages/web.scm
gnu/packages/webkit.scm
gnu/packages/wm.scm
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* gnu/packages/python-science.scm (python-scipy): Update to 1.10.1.
[build-system]: Use pyproject-build-system.
[arguments]: Add #:build-backend argument.
Remove loosen-requirements, build and install phases.
[native-inputs]: Remove python-pypa-build.
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* gnu/packages/python-science.scm (python-scikit-allel): Move up to create
alphabetic order.
[build-system]: Use pyproject-build-system.
[arguments]: Provide test flags instead of overriding 'check phase; split out
build step into new 'build-ext phase. Disable roh_mhmm tests.
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* gnu/packages/python-science.scm (python-scikit-optimize): New variable.
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* gnu/packages/python-science.scm (python-libneuroml): New variable.
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* gnu/packages/python-science.scm (python-pylems): New variable.
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* gnu/packages/python-science.scm (python-pydicom): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/astronomy.scm: (python-sgp4): Move here from python-science.scm.
[description]: Expand description, annotate acronyms, add link to CelesTrak.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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The latest version passes build on aarch64-linux system.
* gnu/packages/python-science.scm (python-sgp4): Update to 2.21.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python-science.scm (python-msgpack-numpy): Update to 0.4.8.
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* gnu/packages/python-science.scm (python-tspex): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/python-science.scm (python-pyts): New variable.
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* gnu/packages/python-science.scm (python-simple-pid): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python-science.scm (python-simplespectral): New variable.
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With resolved conflicts in:
gnu/local.mk
gnu/packages/crates-io.scm
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* gnu/packages/python-science.scm (python-vaex-core): New variable.
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* gnu/packages/python-xyz.scm (python-cython-0.29.32): Remove variable.
* gnu/packages/python-science.scm (python-pandas)[native-inputs]: Change from
PYTHON-CYTHON-0.29.32 to PYTHON-CYTHON.
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* gnu/packages/python-science.scm (python-pandas): Update to 1.4.4.
[native-inputs]: Change from PYTHON-CYTHON to PYTHON-CYTHON-0.29.32.
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* gnu/packages/python-science.scm (python-scipy): Update to 1.9.1.
[source]: Switch to GIT-FETCH.
[outputs]: Remove.
[arguments]: Don't disable Pythran. Don't configure OpenBLAS which is now
discovered by pkg-config. Do a "manual" PEP 517 style build. Make
install-doc phase conditional on the presence of Sphinx. Simplify tests.
[propagated-inputs]: Add PYTHON-PYTHRAN.
[native-inputs]: Remove PERL, WHICH, PYTHON-NUMPYDOC,
PYTHON-PYDATA-SPHINX-THEME, PYTHON-SPHINX, and PYTHON-SPHINX-PANELS. Add
GCC, PKG-CONFIG, PYTHON-PYPA-BUILD and PYTHON-MESON.
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* gnu/packages/python-science.scm (python-pingouin)[arguments]: Add phase.
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* gnu/packages/python-science.scm (python-pingouin): Update to 0.5.2.
[arguments]: Adjust outdated substitution.
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This will hopefully discourage patches which add new packages to the bottom of
files, as this increases the likelihood of conflicts when applying patches.
If there are more specific ways that packages should be arranged in specific
modules, this message can be updated accordingly.
* gnu/packages/bioconductor.scm: Add comment discouraging adding packages to
the bottom of the file.
* gnu/packages/bioinformatics.scm: ditto.
* gnu/packages/cran.scm: ditto.
* gnu/packages/crates-io.scm: ditto.
* gnu/packages/emacs-xyz.scm: ditto.
* gnu/packages/golang.scm: ditto.
* gnu/packages/guile-xyz.scm: ditto.
* gnu/packages/haskell-xyz.scm: ditto.
* gnu/packages/java.scm: ditto.
* gnu/packages/julia-xyz.scm: ditto.
* gnu/packages/lisp-xyz.scm: ditto.
* gnu/packages/ocaml.scm: ditto.
* gnu/packages/perl.scm: ditto.
* gnu/packages/python-science.scm: ditto.
* gnu/packages/python-xyz.scm: ditto.
* gnu/packages/ruby.scm: ditto.
* gnu/packages/tex.scm: ditto.
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* gnu/packages/python-science.scm (python-pyvista): Update to 0.36.1.
Signed-off-by: Marius Bakke <marius@gnu.org>
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* gnu/packages/python-science.scm (python-pyvista): Update to 0.35.2.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/python-science.scm (python-geosketch): New variable.
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* gnu/packages/python-science.scm (python-fbpca): New variable.
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* gnu/packages/python-science (python-pyvista): Update to 0.35.1.
Signed-off-by: Christopher Baines <mail@cbaines.net>
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* gnu/packages/python-science.scm (python-opt-einsum): New variable.
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* gnu/packages/python-science.scm (python-deepdish): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python-science.scm (python-modin): Update to 0.15.1.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python-science.scm (python-scikit-image): Update to 0.19.3.
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* gnu/packages/python-science.scm (python-pyglm): New variable.
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* gnu/packages/python-science.scm (python2-scipy): Delete variable.
(python-scipy)[properties]: Delete field.
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* gnu/packages/python-science.scm (python2-weave): Delete variable.
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* gnu/packages/python-science.scm (python2-pandas): Delete variable.
(python-pandas): Delete related python2-variant property.
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* gnu/packages/python-science.scm (python-distributed): Update to 2022.05.2.
[arguments]: Remove 'sanity-check phase; adjust 'check phase.
[propagated-inputs]: Add python-urllib3.
[native-inputs]: Add python-pytest-timeout and python-flaky.
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* gnu/packages/python-science.scm (python-gpy): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python-science.scm (python-paramz): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python-science.scm (python-climin): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python-science.scm (python-pyvista): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python-science.scm (python-aplus): New variable.
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* gnu/packages/python-science.scm (python-pingouin): Update to 0.5.1.
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* gnu/packages/python-science.scm (python-pandas): Update to 1.4.2.
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* gnu/packages/python-science.scm (python-pandas)
[phases]{enable-parallel-build}: New phase.
{check}: Add xdist -n option. Skip test_memory_usage test.
[native-inputs]: Add python-pytest-xdist.
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