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* gnu/packages/python-science.scm (python-xarray-dataclasses)[native-inputs]:
Add python-pytest.
Change-Id: I137d49380d772f11f75837aa9a915ced85cfc1a2
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* gnu/packages/python-science.scm (python-pandas-2)[arguments]: Set PANDAS_CI
variable.
Change-Id: I7c400ff260b3c833be1a55a30de021a81a5cbacb
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* gnu/packages/python-science.scm (python-pandas-2): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: I7f0510f9021d4eac3c981e5e58f73dc3ec7efd2f
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* gnu/packages/python-science.scm (python-xarray-datatree): New variable.
Change-Id: I403f241b6daae8b5c835f4517a1dceca0393f8e6
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* gnu/packages/python-science.scm (python-xarray-dataclasses): New variable.
Change-Id: I55f258e36ea70a2efb142bd652a81d70771a457c
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* gnu/packages/python-science.scm (python-pods): New variable.
Change-Id: I9044baaa750ee9cb7411e41dcee1df17b57741db
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As seen in <https://ci.guix.gnu.org/build/3708961/log/raw>, parallel
tests introduced package build regression.
* gnu/packages/python-science.scm (python-distributed) [arguments]
<#:test-flags>: Disable parallel tests.
[native-inputs]: Remove python-pytest-xdist.
Change-Id: I3a04098604fa03ab91ceb228dd70c34c3d84db78
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* gnu/packages/python-science.scm (python-distributed) [arguments]
<#:test-flags>: Add option to run tests in parallel. Disable 3 more
flaky tests.
[native-inputs]: Add python-pytest-xdist. Sort alphabetically.
Change-Id: I588c1a1dc82e3208cc1eeeefbdc58fb080775ac0
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* gnu/packages/python-science.scm (python-upsetplot): Update to 0.9.0.
[source]: Remove obsolete snippet.
[arguments]: Remove custom check phase.
[build-system]: Use pyproject-build-system.
Change-Id: I68bcd6840577a12594e491e9fd5e114f9261f6c7
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/python-science.scm (python-scikit-opt): New variable.
Change-Id: I47d6b35d9658a37a242b4db61d293fa7efd33802
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python-science.scm (python-traittypes) [build-system]:
Swap to pyproject-build-system.
[arguments]: Move excluded tests to <#:test-flags>. Use standard 'check
phase.
Change-Id: I4cab0c94036a7e5f0851edf2833dfac2f675d2a0
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* gnu/packages/python-science.scm (python-pynrrd): Update to 1.0.0.
[arguments]: Keep 'ensure-no-mtimes-pre-1980 phase as it's building with
it successfully.
[propagated-inputs]: Add python-nptyping and python-typing-extensions.
Change-Id: Ic4dcd0825e71d3eb4acd39694bee9e22e8485f9f
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* gnu/packages/python-science.scm (python-pynrrd) [description]: Add
definition of NRRD.
Change-Id: I0335df0eb4be600d81799da64374ddfb49b06720
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* gnu/packages/python-science.scm (python-pynrrd): New variable.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/python-science.scm (python-pandarallel): New variable.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/python-science.scm (python-scipy)[propagated-inputs]:
Only include python-jupytext on systems where it is supported.
Change-Id: Ic085094e4e3977e4c0698e8c03de09ee8e70f144
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* gnu/packages/python-science.scm (python-pyjanitor): New variable.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/python-science.scm (python-unyt): New variable.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/python-science.scm (python-pyamg) [source]: Delete
auto-generated files.
[arguments] <#:phases>: Add 'amg-core-bind-them phase to
re-generate *_bind.cpp files deleted in snippet.
[native-inputs]: Add python-cppheaderparser and python-pyyaml.
[description]: Improve style, omit implementation details.
Change-Id: I6f68914cd912e6f4592e51c21b129847e73be847
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* gnu/packages/python-science.scm (python-trimesh): Enable tests and
apply new package style.
[source]: Use git checkout which has working test suit.
[arguments] <#:test-flags>: Disable tests requiring optional Python
modules.
[propagated-inputs]: Add python-chardet, python-colorlog python-httpx
python-jsonschema python-lxml python-networkx python-pillow
python-requests python-rtree python-scipy python-setuptools
python-shapely python-sympy and python-xxhash.
Change-Id: I1aa363053c2d736bc44b8f9071c637256cc2d952
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* gnu/packages/python-science.scm (python-trimesh): Update to 4.0.10.
[build-system]: Swap to pyproject-build-system.
Change-Id: I757b4c27db9969d42021434883a057debbbc83fd
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* gnu/packages/python-science.scm (python-xarray-einstats): Update to 0.7.0.
Change-Id: Iddd1fca8c37f05a928d20b90f9f95814f31435b2
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* gnu/packages/python-science.scm (python-pyts): Update to 0.13.0.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase; enable all tests.
[propagated-inputs]: Remove python-matplotlib.
Change-Id: Iafcc047d8bb14e1eef514fd92aa53f8fda38eab0
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* gnu/packages/python-science.scm (python-pydicom): Update to 2.4.4.
Change-Id: I996115fb3bdf0bd61d2b2dcdb2500b31ce104597
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* gnu/packages/python-science.scm (python-pydicom)[build-system]: Swap
to pyproject-build-system.
[description]: Simplify wording, indent.
Change-Id: I7ef413ea2da6cbb83eb33424c559f7ac5ed549cb
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* gnu/package/python-science.scm (python-pynetdicom)[build-system]: Swap
to pyproject-build-system.
[description]: Simplify wording, indent.
Change-Id: If4e80d06edb0080685d0695f30abc2f9db669f45
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* gnu/packages/python-science.scm (python-pynetdicom): New variable.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/python-science.scm (python-scipy): Update to 1.12.0.
[propagated-inputs]: Add python-jupytext, python-mpmath, python-mypy,
python-numpydoc, python-pydata-sphinx-theme, python-pydevtool,
python-rich-click, python-sphinx, python-threadpoolctl, and
python-typing-extensions; remove python-pyparsing.
[native-inputs]: Add python-hypothesis, python-pycodestyle, python-pytest-cov,
and python-pytest-xdist; remove python-threadpoolctl.
Change-Id: I81a4831e3d94c58416f7d35ec47de90370b88210
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* gnu/packages/python-science.scm (python-tdda)[arguments]<#:phases>: Remove relax-requirements phase.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/python-science.scm (python-scikit-fem): Update to 9.0.1.
[arguments]<#:test-flags>: Drop it to activate all tests.
[native-inputs]: Add python-autograd, python-pyamg, and python-shapely.
Change-Id: Ic4706196026bd5756b4db8230b15efacdca7d463
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* gnu/packages/python-science.scm (python-pyamg): New variable.
Change-Id: Ibf39fecd14d4e6fd72078b217737e5e5cbbf2321
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/python-science.scm (python-pandera): Fix build.
[source]: Delete tests/modin directory.
[native-inputs]: Remove python-modin.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/python-science.scm (python-pandas-stubs): Update to
1.5.3.230321.
[arguments]<#:test-flags>: Ignore tests that require a version of
python-pyarrow with ORC integration.
[native-inputs]: Add python-odfpy.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/python-science.scm (python-plotnine): Reformat with guix style.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/python-science.scm (python-plotnine): Fix build.
[arguments]<#:test-flags>: Add test_custom_shape to ignored tests.
Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/python-science.scm (python-pandera): New variable.
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* gnu/packages/python-science.scm (python-pandas-stubs): New variable.
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* gnu/packages/python-science.scm (python-deepdish): Fix build.
[build-system]: Swap to pyproject-build-system.
[arguments]<#:test-flags>: Silent failing tests.
Change-Id: I4c4df66fc80434aaf5b95a7a62b83e0c1c02a4c6
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* gnu/packages/python-science.scm (python-xarray): Update to 2023.12.0.
[arguments]: Ignore one test file.
[propagated-inputs]: Add python-packaging.
Change-Id: I6b70f59670f7bc8b56787fe3436579db8ac113bb
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* gnu/packages/python-science.scm (python-pandas): Update to 1.5.3.
[build-system]: Use pyproject-build-system.
[arguments]: Use G-expression; move test flags to #:test-flags; add phase
'patch-build-system; fix substitution of "which" executable; remove
'enable-parallel-build; remove custom 'check phase; add 'pre-check phase.
[propagated-inputs]: Add python-matplotlib.
[native-inputs]: Replace python-cython with python-cython-0.29.35.
Change-Id: I9d09971f707b925f469e29be67fe040c181314ff
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* gnu/packages/python-science.scm (python-scikit-optimize)[source]: Add
snippet to fix outdated use of "max_features" option.
Change-Id: I4272ffc82b4951315b74b4adee27527e8d513fca
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* gnu/packages/python-science.scm (python-scikit-image): Update to 0.22.0.
[source]: Fetch from git repository.
[build-system]: Use pyproject-build-system.
[arguments]: Use G-expression; remove custom 'build phase; simplify 'check
phase; enable all tests.
[propagated-inputs]: Add python-lazy-loader.
[native-inputs]: Add meson-python, python-numpydoc, python-packaging, and
python-wheel.
Change-Id: I00ede026a7941eae36157106f753a21fb64099c3
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* gnu/packages/python-science.scm (python-scipy): Update to 1.11.4.
[arguments]: Use mesonpy backend.
[inputs]: Replace pybind11 with pybind11-2.10.
[native-inputs]: Add python-click, python-doit, python-pooch, and
python-pydevtool; replace python-cython with python-cython-0.29.35.
Change-Id: I4b26e1b6382899bba24f84461f154e97765e08f5
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This test times out since the merge of the mesa-updates branch.
* gnu/packages/python-science.scm (python-distributed)[arguments]: Disable
test_tell_workers_when_peers_have_left.
Change-Id: Ib65b971a3a821ea13d36a4be60658ffc366ca6ac
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* gnu/packages/python-science.scm (python-vaex-core)[propagated-inputs]: Add
python-click.
Change-Id: Id91e925832ed107d5b346ba513a9825dc31481f6
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* gnu/packages/python-science.scm (python-pytensor): Update to 2.18.1.
Change-Id: I7992d8a00c378c008995df3d026c3e05c235ae6d
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* gnu/packages/python-science.scm (python-gpy)[source]: Add snippet to
adjust python module imports.
Change-Id: I0772febb97d75e0a0caa331913c9e7453d11e70d
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* gnu/packages/python-science.scm (python-pyfma): New variable.
Change-Id: I354d3d56f2799c8c9ac9b868fcacbf88dcc5c25d
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python-science.scm (python-meshzoo): New variable.
Change-Id: Ia41d62ebd6c4cb3c22ebe0668c36279a9ca191ac
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python-science.scm (python-tdda): New variable.
Change-Id: I456aa236b3348e5b990289d8a381c2d5276a12f1
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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