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2022-07-15gnu: python-pyvista: Update to 0.35.1.Paul A. Patience
* gnu/packages/python-science (python-pyvista): Update to 0.35.1. Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-07-08gnu: Add python-opt-einsum.Ricardo Wurmus
* gnu/packages/python-science.scm (python-opt-einsum): New variable.
2022-07-03gnu: Add python-deepdish.Antero Mejr
* gnu/packages/python-science.scm (python-deepdish): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-06-26gnu: python-modin: Update to 0.15.1.Greg Hogan
* gnu/packages/python-science.scm (python-modin): Update to 0.15.1. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-06-18gnu: python-scikit-image: Update to 0.19.3.Vinicius Monego
* gnu/packages/python-science.scm (python-scikit-image): Update to 0.19.3.
2022-06-08gnu: Add PyGLM.Eric Bavier
* gnu/packages/python-science.scm (python-pyglm): New variable.
2022-05-31gnu: Remove python2-scipy.Maxim Cournoyer
* gnu/packages/python-science.scm (python2-scipy): Delete variable. (python-scipy)[properties]: Delete field.
2022-05-31gnu: Remove python2-weave.Maxim Cournoyer
* gnu/packages/python-science.scm (python2-weave): Delete variable.
2022-05-31gnu: Remove python2-pandas.Maxim Cournoyer
* gnu/packages/python-science.scm (python2-pandas): Delete variable. (python-pandas): Delete related python2-variant property.
2022-05-31gnu: python-distributed: Update to 2022.05.2.Ricardo Wurmus
* gnu/packages/python-science.scm (python-distributed): Update to 2022.05.2. [arguments]: Remove 'sanity-check phase; adjust 'check phase. [propagated-inputs]: Add python-urllib3. [native-inputs]: Add python-pytest-timeout and python-flaky.
2022-05-29gnu: Add python-gpy.Wiktor Zelazny
* gnu/packages/python-science.scm (python-gpy): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-29gnu: Add python-paramz.Wiktor Zelazny
* gnu/packages/python-science.scm (python-paramz): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-29gnu: Add python-climin.Wiktor Zelazny
* gnu/packages/python-science.scm (python-climin): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-23gnu: Add python-pyvista.Paul A. Patience
* gnu/packages/python-science.scm (python-pyvista): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-20gnu: Add python-aplus.Ricardo Wurmus
* gnu/packages/python-science.scm (python-aplus): New variable.
2022-05-12gnu: python-pingouin: Update to 0.5.1.Maxim Cournoyer
* gnu/packages/python-science.scm (python-pingouin): Update to 0.5.1.
2022-05-12gnu: python-pandas: Update to 1.4.2.Maxim Cournoyer
* gnu/packages/python-science.scm (python-pandas): Update to 1.4.2.
2022-05-12gnu: python-pandas: Build and run tests in parallel.Maxim Cournoyer
* gnu/packages/python-science.scm (python-pandas) [phases]{enable-parallel-build}: New phase. {check}: Add xdist -n option. Skip test_memory_usage test. [native-inputs]: Add python-pytest-xdist.
2022-05-12gnu: python-scipy: Update to 1.8.0 and enable parallel build.Maxim Cournoyer
* gnu/packages/python-science.scm (python-scipy): Update to 1.8.0. [modules]: New argument. [phases]{disable-broken-tests}: Delete phase. {configure-openblas}: Streamline configuration template. {parallelize-build}: New phase. {install-doc}: Move before 'check phase. Remove now extraneous 'add-installed-pythonpath' call. Remove the SPHINXBUILD and PYVER Make variables, as well as conf.py patching. Provide SPHINXOPTS to build doc in parallel. Simply recursively copy the 'html' output directory to install the doc. {check}: Remove extraneous INPUTS and OUTPUTS arguments. Start tests with the 'runtests.py' launcher, which accepts a '-j' argument to run the tests in parallel. [native-inputs]: Sort inputs. Add python-pytest-xdist and python-threadpoolctl. [home-page]: Update.
2022-05-12gnu: python-scipy: Move input fields below arguments field.Maxim Cournoyer
* gnu/packages/python-science.scm (python-scipy): Move inputs fields below the arguments field. [phases]: Use gexp. {configure-openblas}: Use this-package-input. {check}: Remove extraneous 'add-installed-pythonpath' call. {install-doc}: Adjust accordingly.
2022-05-06gnu: python-vedo: Update to 2022.2.0.Paul A. Patience
* gnu/packages/python-science.scm (python-vedo): Update to 2022.2.0. [arguments]: Add 'fix-tests' phase. [inputs]: Move fenics and python-matplotlib to propagated-inputs. Move python-pkgconfig from here... [native-inputs]: ...to here. [propagated-inputs]: Add python-deprecated (and fenics and python-matplotlib). [description]: Make description more accurate. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-06gnu: python-vedo: Disable sanity check.Paul A. Patience
* gnu/packages/python-science.scm (python-vedo)[arguments]: Disable sanity check. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-06gnu: python-vedo: Remove input labels.Paul A. Patience
* gnu/packages/python-science.scm (python-vedo)[inputs]: Remove labels and sort the inputs. [propagated-inputs]: Remove labels. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-06gnu: python-vedo: Honor #:tests? flag.Paul A. Patience
* gnu/packages/python-science.scm (python-vedo)[arguments]: Adjust custom 'check' phase to honor the #:tests? flag. Also remove its trailing boolean. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-06gnu: Add python-traittypes.Ricardo Wurmus
* gnu/packages/python-science.scm (python-traittypes): New variable.
2022-04-07gnu: Add python-trimesh.Malte Frank Gerdes
* gnu/packages/python-science.scm (python-trimesh): New variable. Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
2022-03-31gnu: Add python-numpy-groupies.Ricardo Wurmus
* gnu/packages/python-science.scm (python-numpy-groupies): New variable.
2022-03-18gnu: Add python-scikit-allel.Efraim Flashner
* gnu/packages/python-science.scm (python-scikit-allel): New variable.
2022-03-17gnu: python-scipy: Adjust phases.Efraim Flashner
* gnu/packages/python-science.scm (python-scipy)[arguments]: Replace 'check with custom 'check phase.
2022-03-03gnu: python-scikit-image: Update to 0.19.2.Vinicius Monego
* gnu/packages/python-science.scm (python-scikit-image): Update to 0.19.2.
2022-02-19gnu: python-scikit-image: Update to 0.19.1.Marius Bakke
* gnu/packages/python-science.scm (python-scikit-image): Update to 0.19.1. [propagated-inputs]: Add PYTHON-PYTHRAN. [native-inputs]: Remove PYTHON-CODECOV, PYTHON-FLAKE8, PYTHON-PYTEST-COV, and PYTHON-WHEEL.
2022-02-19gnu: Add python-pythran.Marius Bakke
* gnu/packages/python-science.scm (python-pythran): New variable.
2022-01-22gnu: python-upsetplot: Update to 0.6.0.Marius Bakke
* gnu/packages/python-science.scm (python-upsetplot): Update to 0.6.0. [source](modules, snippet): New fields. [arguments]: Remove obsolete phase. Respect TESTS? in check phase.
2022-01-22gnu: python-pandas: Remove old version.Marius Bakke
* gnu/packages/python-science.scm (python-pandas-0.25): Remove variable. (python2-pandas): Inherit from PYTHON-PANDAS.
2022-01-17Merge branch 'version-1.4.0'Maxim Cournoyer
With resolved conflicts in: gnu/packages/gnome.scm gnu/packages/openstack.scm gnu/packages/python-xyz.scm
2022-01-10gnu: python-pandas: Update to 1.3.5.Maxim Cournoyer
* gnu/packages/python-science.scm (python-pandas): Update to 1.3.5. [phases]{check}: Add a reference to the network accessing tests issue, now reported upstream. Reinstate the excelwriter tests. [propagated-inputs]: Add python-xlsxwriter. [native-inputs]: Remove python-nose.
2022-01-12gnu: python-scikit-fuzzy: Disable tests.Marius Bakke
* gnu/packages/python-science.scm (python-scikit-fuzzy)[arguments]: Add #:tests?. Remove #:phases.
2022-01-12gnu: python-modin: Permit newer versions of pandas.Marius Bakke
* gnu/packages/python-science.scm (python-modin)[arguments]: Add phase.
2021-12-22gnu: python-scipy: Update to 1.7.3.Efraim Flashner
* gnu/packages/python-science.scm (python-scipy): Update to 1.7.3. [native-inputs]: Add python-pydata-sphinx-theme, python-sphinx-panels. [arguments]: Add phase to build without python-pythran. Remove trailing #t from phases. * gnu/packages/sphinx.scm (python-pydata-sphinx-theme)[native-inputs]: Remove python-plotly.
2021-12-22gnu: python-pingouin: Update to 0.5.0.Arun Isaac
* gnu/packages/python-science.scm (python-pingouin): Update to 0.5.0.
2021-12-21Revert "gnu: python-pingouin: Update to 0.5.0."Efraim Flashner
This reverts commit f2ad33bc3933b710e5beb6592a9a4925b91b199a. python-pingouin after 0.3.12 needs newer versions of all the python science libraries.
2021-12-16gnu: python-pyflow: Rename to python2-pyflow.Lars-Dominik Braun
The package was never compatible with Python 3. Not adding a deprecated package variant, because going from Python 3 to Python 2 is a breaking change and it’s unlikely anyone ever used the package anyway (it was likely broken). * gnu/packages/python-science.scm (python-pyflow): Move… (python2-pyflow): …here. [arguments]: Use Python 2.
2021-12-13gnu: python-distributed: Update to 2021.11.2.Marius Bakke
* gnu/packages/python-science.scm (python-distributed): Update to 2021.11.2. [source](snippet): New field. [arguments]: Add versioneer phase. [native-inputs]: Add PYTHON-VERSIONEER.
2021-12-13gnu: Simplify package inputs.Ludovic Courtès
This commit was obtained by running: ./pre-inst-env guix style without any additional argument.
2021-12-09gnu: python2-scipy: Override native inputs.Ricardo Wurmus
* gnu/packages/python-science.scm (python2-scipy)[native-inputs]: Override; replace gfortran with gfortran-7; add gcc-7.
2021-11-17Merge branch 'master' into core-updates-frozenLudovic Courtès
2021-11-15gnu: python-pingouin: Update to 0.5.0.Arun Isaac
* gnu/packages/python-science.scm (python-pingouin): Update to 0.5.0.
2021-11-15gnu: python-scipy: Run tests conditionally.Ricardo Wurmus
* gnu/packages/python-science.scm (python-scipy)[arguments]: Respect TESTS? in 'CHECK phase.
2021-10-25gnu: python-pandas: Update to 1.3.4.Efraim Flashner
* gnu/packages/python-science.scm (python-pandas): Update to 1.3.4.
2021-10-25gnu: python-pandas: Fix building with pytest-6.Efraim Flashner
* gnu/packages/python-science.scm (python-pandas)[arguments]: In custom 'check phase adjust to not fail tests with missing test data.
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