Age | Commit message (Collapse) | Author |
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* gnu/packages/python.scm (python-3.9): Update to 3.9.5.
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Conflicts:
gnu/local.mk
gnu/packages/bioinformatics.scm
gnu/packages/django.scm
gnu/packages/gtk.scm
gnu/packages/llvm.scm
gnu/packages/python-web.scm
gnu/packages/python.scm
gnu/packages/tex.scm
guix/build-system/asdf.scm
guix/build/emacs-build-system.scm
guix/profiles.scm
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* gnu/packages/python.scm (python-3.8)[source]: Add
'python-3.8-CVE-2021-3177.patch'.
[replacement]: Remove field.
(python-3.8/fixed): Remove variable.
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* gnu/packages/python.scm (python-2.7)[source]: Add
'python-2.7-CVE-2021-3177.patch'.
[replacement]: Remove field.
(python-2.7/fixed): Remove variable.
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* gnu/packages/algebra.scm (fftwf, fftw-openmpi),
gnu/packages/audio.scm (ztoolkit-rsvg),
gnu/packages/bioinformatics.scm (python2-dendropy),
gnu/packages/boost.scm (boost-with-python2),
gnu/packages/check.scm (python2-mock, python2-pytest-mock),
gnu/packages/cups.scm (hplip-minimal),
gnu/packages/freedesktop.scm (libinput-minimal),
gnu/packages/gettext.scm (gnu-gettext),
gnu/packages/glib.scm (python2-pygobject),
gnu/packages/gnome.scm (gdl-minimal, libsoup-minimal, python2-pyatspi),
gnu/packages/groff.scm (groff-minimal),
gnu/packages/jami.scm (ffmpeg-jami),
gnu/packages/libcanberra.scm (libcanberra/gtk+-2),
gnu/packages/lirc.scm (python2-lirc),
gnu/packages/llvm.scm (clang-runtime-3.5),
gnu/packages/mpi.scm (java-openmpi, openmpi-thread-multiple),
gnu/packages/node.scm (libnode),
gnu/packages/onc-rpc.scm (libtirpc/hurd),
gnu/packages/python-compression.scm (bitshuffle-for-snappy),
gnu/packages/python-crypto.scm (python2-pycrypto, python2-cryptography)
(python2-cryptography, python2-m2crypto),
gnu/packages/python-web.scm (python2-html2text, python2-tornado)
(python2-terminado, python2-ndg-httpsclient, python2-websocket-client)
(python2-rauth, python2-url, python2-s3transfer),
gnu/packages/python-xyz.scm (python2-psutil, python2-serpent)
(python2-humanfriendly, python2-empy, python2-parse-type, python2-polib)
(python2-jsonschema, python2-pystache, python2-cython, python2-numpydoc)
(python2-ipyparallel, python2-traitlets, python2-dbus)
(python2-beautifulsoup4, python2-pep517, python2-flake8, python2-llfuse)
(python2-tlsh, python-file, python2-notebook, python-jupyter-console-minimal)
(python2-contextlib2, python2-promise, python2-anyjson, python2-amqp)
(python2-kombu, python2-billiard, python2-celery, python2-whoosh)
(python2-jellyfish, python-rope, ptpython-2, python2-binaryornot)
(python2-setproctitle, python2-argcomplete, python2-xopen, python2-isort)
(python2-radon, python2-rfc6555, python2-activepapers, python2-send2trash)
(python2-cloudpickle, python2-reparser),
gnu/packages/python.scm (python2-called-python),
gnu/packages/qt.scm (python2-sip, python-pyqt-without-qtwebkit, python2-pyqt)
(python-qscintilla, python-pyqt+qscintilla),
gnu/packages/scanner.scm (sane-backends),
gnu/packages/sdl.scm (guile3.0-sdl2),
gnu/packages/selinux.scm (checkpolicy, libselinux, libsemanage, secilc)
(python-sepolgen, policycoreutils),
gnu/packages/serialization.scm (lua5.1-libmpack, lua5.2-libmpack),
gnu/packages/simulation.scm (fenics),
gnu/packages/statistics.scm (python2-statsmodels),
gnu/packages/texinfo.scm (info-reader),
gnu/packages/wxwidgets.scm (wxwidgets-gtk2, wxwidgets-gtk2-3.1),
gnu/packages/xml.scm (xmlsec-nss),
gnu/packages/xorg.scm (uim-gtk, uim-qt),
guix/build-system/python.scm (package-with-explicit-python)
(strip-python2-variant): Use PACKAGE/INHERIT.
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* gnu/packages/python.scm (micropython): Update to 1.14.
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* gnu/packages/patches/python-2.7-CVE-2021-3177.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-2.7)[replacement]: New field.
(python-2.7/fixed): New variable.
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* gnu/packages/python.scm (python-3.9): Update to 3.9.2.
[source]: Remove obsolete patch.
* gnu/packages/patches/python-3.9-CVE-2021-3177.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/patches/python-3.8-CVE-2021-3177.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-3.8)[replacement]: New field.
(python-3.8/fixed): New variable.
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* gnu/packages/patches/python-3.9-CVE-2021-3177.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-3.9)[source]: Use it.
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* gnu/packages/python.scm (pypy3): Do not alter PYTHONPATH.
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Using PYTHONPATH as a mean to discover the Python packages had the following
issues:
1. It is not versioned, so different versions of Python would clash if
installed in a shared profile.
2. It would interfere with the host Python site on foreign
distributions, sometimes preventing a a user to login their GDM
session (!).
3. It would take precedence over user installed Python packages
installed through pip.
4. It would leak into Python virtualenvs, which are supposed to create
isolated Python environments.
This changes fixes the above issues by making use of a sitecustomize.py
module. The newly introduced GUIX_PYTHONPATH environment variable is read
from the environment, filtered for the current Python version of the
interpreter, and spliced in 'sys.path' just before Python's own site location,
which provides the expected behavior.
* gnu/packages/aux-files/python/sitecustomize.py: New file.
* Makefile.am: Register it.
* gnu/packages/python.scm (customize-site)
(guix-pythonpath-search-path): New procedures.
(python-2.7)[phases]{install-sitecustomize.py}: New phase.
[native-inputs]{sitecustomize.py}: New input.
[native-search-paths]: Replace PYTHONPATH with GUIX_PYTHONPATH.
(python-3.9)[native-search-paths]: Likewise.
[phases]{install-sitecustomize}: Override with correct version.
[native-search-paths]: Replace PYTHONPATH with GUIX_PYTHONPATH.
* gnu/packages/commencement.scm (python-boot0):
[phases]{install-sitecustomize}: Likewise.
[native-inputs]{sitecustomize.py}: New input.
[native-search-paths]: Replace PYTHONPATH with GUIX_PYTHONPATH.
* guix/build/python-build-system.scm (site-packages): Do not add a trailing
'/'.
squash! gnu: python: Replace PYTHONPATH by GUIX_PYTHONPATH.
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Python 3.9 implemented PEP 615 (<)https://www.python.org/dev/peps/pep-0615/>),
which relies on either a compiled time default value or the PYTHONTZPATH
environment variable to find the system tzdata database.
* gnu/packages/python.scm (python-3.9)[native-search-paths]: Add a new search
path specification for PYTHONTZPATH.
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* gnu/packages/python.scm (python-3.8): Rename to...
(python-3.9): ... this. Update version to 3.9.1.
[arguments]{make-flags}: Restore test_socket test.
[phases]{unset-SOURCE_DATE_EPOCH, reset-SOURCE_DATE_EPOCH}: Remove phases.
{rebuild-bytecode}: Simplify code. Set the invalidation-mode argument of the
compileall module to "unchecked-hash", to ensure determinism.
(python-3): Adjust to refer to python-3.9.
* gnu/packages/patches/python-3-fix-tests.patch: Rebase and extend patch.
* gnu/packages/patches/python-3.8-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): De-register it.
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* gnu/packages/python.scm (python-3.8)[source]: Add
"python-3-arm-alignment.patch" to the patches field.
[phases]{apply-alignment-patch}: Remove phase.
[native-inputs]: Remove arm-alignment.patch.
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* gnu/packages/python.scm (python-3.8): Fix indentation.
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* gnu/packages/python.scm (python-3.9): New variable.
* gnu/packages/patches/python-3.9-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/patches/python-CVE-2020-26116.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/python.scm (python-3.8)[source](patches): Add it.
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* gnu/packages/patches/python-3-configure-hurd.patch: this New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-3.8)[source]: Use it.
[arguments]: Remove "support-hurd-cross-compile" stage.
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Fixes <https://bugs.gnu.org/43860>.
* gnu/packages/python.scm (python-3.8)[arguments]: When building for the Hurd,
disable more tests.
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* gnu/packages/python.scm (python-2.7)[phases]{rebuild-bytecode}: Byte compile
using optimization level, -OO. Provide the output directory as the source
argument to 'compileall', instead of looping over each individual source file.
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* gnu/packages/python.scm (python-2.7): Update to 2.7.18.
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* gnu/packages/python.scm (python-2.7): Fix indentation.
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Conflicts:
gnu/packages/admin.scm
gnu/packages/commencement.scm
gnu/packages/gdb.scm
gnu/packages/llvm.scm
gnu/packages/package-management.scm
gnu/packages/tls.scm
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* gnu/packages/python.scm (micropython): Update to 1.13.
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* gnu/packages/python.scm (python-3.8): Update to 3.8.5.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/python.scm (python-wrapper)[description]: Mention that `pip'
won't work properly if both python and python-wrapper are installed.
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* gnu/packages/python.scm (micropython): Update to 1.12.
[arguments]: Add phase to compile mpy-cross before compiling micropython.
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* gnu/packages/python.scm (python-3.8): When cross-compiling for Hurd, add
substitution for the configure script.
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* gnu/packages/python.scm (pypy3): New public variable.
* gnu/packages/patches/pypy3-7.3.1-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* .mailmap: change email and name for Nikita.
* Makefile.am, doc/guix.texi, etc/completion/fish/guix.fish,
gnu/packages/accessibility.scm, gnu/packages/admin.scm,
gnu/packages/audio.scm, gnu/packages/autotools.scm, gnu/packages/cdrom.scm,
gnu/packages/check.scm, gnu/packages/cinnamon.scm,
gnu/packages/compression.scm, gnu/packages/crypto.scm,
gnu/packages/databases.scm, gnu/packages/django.scm, gnu/packages/dns.scm,
gnu/packages/elixir.scm, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm,
gnu/packages/enlightenment.scm, gnu/packages/erlang.scm,
gnu/packages/fonts.scm, gnu/packages/fontutils.scm, gnu/packages/forth.scm,
gnu/packages/fvwm.scm, gnu/packages/games.scm, gnu/packages/gl.scm,
gnu/packages/gnome.scm, gnu/packages/gnunet.scm, gnu/packages/gnupg.scm,
gnu/packages/gtk.scm, gnu/packages/guile-wm.scm, gnu/packages/guile-xyz.scm,
gnu/packages/haskell-apps.scm, gnu/packages/haskell-check.scm,
gnu/packages/haskell-crypto.scm, gnu/packages/haskell-xyz.scm,
gnu/packages/haskell.scm, gnu/packages/image-viewers.scm,
gnu/packages/image.scm, gnu/packages/irc.scm, gnu/packages/language.scm,
gnu/packages/libcanberra.scm, gnu/packages/linux.scm,
gnu/packages/lisp-xyz.scm, gnu/packages/lisp.scm, gnu/packages/lolcode.scm,
gnu/packages/lxde.scm, gnu/packages/lxqt.scm, gnu/packages/mail.scm,
gnu/packages/markup.scm, gnu/packages/mate.scm, gnu/packages/maths.scm,
gnu/packages/mc.scm, gnu/packages/messaging.scm, gnu/packages/music.scm,
gnu/packages/ncurses.scm, gnu/packages/networking.scm,
gnu/packages/nickle.scm, gnu/packages/openbox.scm, gnu/packages/pdf.scm,
gnu/packages/perl-check.scm, gnu/packages/perl.scm,
gnu/packages/python-compression.scm, gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm, gnu/packages/python-xyz.scm,
gnu/packages/python.scm, gnu/packages/qt.scm, gnu/packages/ruby.scm,
gnu/packages/rust.scm, gnu/packages/scheme.scm,
gnu/packages/serialization.scm, gnu/packages/shells.scm,
gnu/packages/ssh.scm, gnu/packages/suckless.scm, gnu/packages/tbb.scm,
gnu/packages/telephony.scm, gnu/packages/text-editors.scm,
gnu/packages/textutils.scm, gnu/packages/time.scm, gnu/packages/tls.scm,
gnu/packages/tor.scm, gnu/packages/version-control.scm,
gnu/packages/video.scm, gnu/packages/vim.scm, gnu/packages/web.scm,
gnu/packages/wm.scm, gnu/packages/xdisorg.scm, gnu/packages/xfce.scm,
gnu/packages/xml.scm, gnu/packages/xorg.scm, gnu/services/certbot.scm,
gnu/services/desktop.scm, gnu/services/version-control.scm,
gnu/services/web.scm, guix/import/hackage.scm, guix/licenses.scm: Likewise.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/python.scm (python-2.7)[arguments]: Add `fix-regen'
stage to correct a reference to "/usr".
(python-3.8): Remove build fix for 2.x..3.5.9 that breaks on 3.8.2.
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This follows up 67ca82e6ddc9f1c87fa8c033729a1f53b7c2b3ba which was ineffective
when running 'guix build --system=armhf-linux python' on e.g. x86_64-linux
because the conditional would always return the native system.
* gnu/packages/python.scm (python-3.8)[native-inputs]: Add "arm-alignment.patch".
[arguments]: Add phase to apply it.
[source](patches): Remove it.
* gnu/packages/commencement.scm (python-boot0): Prevent inheriting the phase.
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* gnu/packages/patches/python-3-arm-alignment.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/python.scm (python-3.8)[source](patches): Add it when the
current system is ARM.
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* gnu/packages/python.scm (python-3.8): Update to 3.8.2.
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* gnu/packages/python.scm (python-3.7): Rename to ...
(python-3.8): ... this. Update to 3.8.1.
[source](patches): Add "python-3.8-fix-tests.patch".
[source](snippet): Adjust for renamed file.
(python-3): Alias to PYTHON-3.8.
* gnu/packages/patches/python-3-search-paths.patch: Adjust for 3.8.
* gnu/packages/patches/python-3.8-search-paths.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
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* gnu/packages/python.scm (python-2.7): Update to 2.7.17.
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* gnu/packages/patches/libffi-3.2.1-complex-alpha.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/libffi.scm (libffi): Update to 3.3.
[source](patches): Remove.
* gnu/packages/python.scm (python-3.7)[arguments]: Remove workaround.
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* gnu/packages/python.scm (python-3.8): New public variable.
[source]: Add patches to skip four tests.
* gnu/packages/patches/python-3.8-search-paths.patch: New file.
* gnu/packages/patches/python-3.8-fix-tests.patch: New file.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
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* gnu/packages/patches/python-2.7-search-paths.patch: Add cross-compilation
support.
* gnu/packages/patches/python-3-search-paths.patch: Ditto.
* gnu/packages/patches/python-cross-compile.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add above new patch.
* gnu/packages/python.scm (python-2.7)[patches]: Add new patch above,
[arguments]: Set _PYTHON_HOST_PLATFORM env variable when cross compiling.
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* gnu/packages/python.scm (python-2.7)[arguments]: Add a configure flag to
disable a check failing when cross-compiling. This is covered here:
https://lists.yoctoproject.org/pipermail/poky/2013-June/008997.html,
[native-inputs]: Add self and which when cross-compiling,
(python-3.7)[arguments]: Refer to native python when cross-compiling.
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* gnu/packages/python.scm (micropython): Update to 1.11.
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* gnu/packages/python.scm (python-3.7): Update to 3.7.4.
[source](snippet): Move disabled tests ...
[arguments]<#:make-flags>: ... here. Enable previously failing tests.
<#:phases>: Add 'set-TZDIR'.
[native-inputs]: Add TZDATA-FOR-TESTS.
* gnu/packages/commencement.scm (python-boot0)[arguments]: Clear <#:make-flags>.
Delete 'set-TZDIR' phase.
* gnu/packages/patches/python-3-fix-tests.patch: Disable two new tests that do
not work in the build container. Adjust context.
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* gnu/packages/python.scm (python-2.7)[arguments]: Pass "INSTALL" and
"MKDIR_P" in <#:configure-flags>.
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