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2016-12-18gnu: r: Update to 3.3.2.Raoul Bonnal
* gnu/packages/statistics.scm (r): Update to 3.3.2.
2016-12-14gnu: Add r-bit64.Ben Woodcroft
* gnu/packages/statistics.scm (r-bit64): New variable.
2016-12-14gnu: Add r-bit.Ben Woodcroft
* gnu/packages/statistics.scm (r-bit): New variable.
2016-11-29Merge branch 'master' into python-build-systemHartmut Goebel
2016-11-28gnu: Add r-rocr.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rocr): New variable.
2016-11-28gnu: Add r-gplots.Ricardo Wurmus
* gnu/packages/statistics.scm (r-gplots): New variable.
2016-11-28gnu: Add r-gdata.Ricardo Wurmus
* gnu/packages/statistics.scm (r-gdata): New variable.
2016-11-28gnu: Add r-gtools.Ricardo Wurmus
* gnu/packages/statistics.scm (r-gtools): New variable.
2016-11-28gnu: Add r-sfsmisc.Ricardo Wurmus
* gnu/packages/statistics.scm (r-sfsmisc): New variable.
2016-11-28gnu: Add r-fastcluster.Ricardo Wurmus
* gnu/packages/statistics.scm (r-fastcluster): New variable.
2016-11-28gnu: Add r-preprocesscore.Ricardo Wurmus
* gnu/packages/statistics.scm (r-preprocesscore): New variable.
2016-11-28gnu: Add r-dynamictreecut.Ricardo Wurmus
* gnu/packages/statistics.scm (r-dynamictreecut): New variable.
2016-11-28gnu: Add r-spams.Ricardo Wurmus
* gnu/packages/statistics.scm (r-spams): New variable.
2016-11-28gnu: Add r-googlesheets.Ricardo Wurmus
* gnu/packages/statistics.scm (r-googlesheets): New variable.
2016-11-28gnu: Add r-cellranger.Ricardo Wurmus
* gnu/packages/statistics.scm (r-cellranger): New variable.
2016-11-28gnu: Add r-rematch.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rematch): New variable.
2016-11-15gnu: python-statsmodels: Fix buildHartmut Goebel
* gnu/packages/statistics.scm (python-statsmodels): [check] set PYTHONPATH prior to running tests.
2016-11-15gnu: Remove work-arounds for bug 20765 (ensure uncompressed eggs).Hartmut Goebel
Bug 20765 is solved since we build all Python packages using option "--single-version-externally-managed". * gnu/packages/bioinformatics.scm (pbtranscript-tofu): Remove configure-flags. (pepr): remove phase "disable-egg-generation". * gnu/packages/pdf.scm (reportlab): Remove configure-flags. * gnu/packages/python.scm (python-sphinx-rtd-theme, python2-elib.intl, python-pkgconfig, python-pytest-pep8, python-pytest-flakes): Remove configure-flags. (python-pillow) remove phase "disable-egg-generation". (python-libarchive-c) Remove patching setup.cfg. * gnu/packages/statistics.scm (python-patsy): remove phase "prevent-generation-of-egg-archive". * gnu/packages/tls.scm (python-acme): remove phase "disable-egg-compression". * gnu/packages/tor.scm (onionshare): Remove configure-flags.
2016-11-15gnu: Remove python-setuptools and python2-setuptools from inputs (part 4a)Hartmut Goebel
This patch contains the changes for all modules beside python.scm where setuptools are used in an inherited package and removing this input also removes the need for inheriting the package. This is the case if adding setuptools in the inherited package was the only change. Change this to not inherit and remove the new needless call to "strip-python2-variant (if applicable). * gnu/packages/bioinformatics.scm (python-biopython, python2-biopython, python-twobitreader, python2-twobitreader, python-plastid, python2-plastid, python2-pybigwig, python2-screed, sra-tools): No longer "inherit" Python 2 packages inheriting from a Python 3 package if the sole reason for inheriting was adding python-setuptools respective python2-setuptools to [inputs], [native-inputs] or [propagated-inputs]. Remove now needless [properties] "python2-variant" where applicable. * gnu/packages/django.scm (python-pytest-django, python2-pytest-django, python-django-filter, python2-django-filter): Likewise. * gnu/packages/gnupg.scm (python2-pygpgme): Likewise. * gnu/packages/mail.scm (python-mailmanclient, python2-mailmanclient): Likewise. * gnu/packages/mpd.scm (python-msp, python2-mpd2): Likewise. * gnu/packages/music.scm (python-pylast, python2-pylast): Likewise. * gnu/packages/openstack.scm (python-requests-mock, python2-requests-mock, python2-git-review): Likewise. * gnu/packages/password-utils.scm (python2-bcrypt): Likewise. * gnu/packages/protobuf.scm (python-protobuf, python2-protobuf): Likewise. * gnu/packages/statistics.scm (python-patsy, python2-patsy): Likewise. * gnu/packages/web.scm (python2-feedparser): Likewise.
2016-11-15gnu: Remove python-setuptools and python2-setuptools from inputs (part 3)Hartmut Goebel
This patch contains the changes where setuptools are used in an inherited package and removing this input keeps the need for inheriting the package. * gnu/packages/bioinformatics.scm (python2-biom-format): Remove python-setuptools respective python2-setuptools from [inputs], [native-inputs] and [propagated-inputs] in Python 2 packages inheriting from a Python 3 package. * gnu/packages/python.scm (python2-pytest-mock, python2-oauthlib, python2-seaborn, python2-tornado, python2-terminado, python2-rauth, python2-anyjson, python2-amqp, python2-kombu, python2-billiard, python2-celery, python2-jellyfish, python2-binaryornot, python2-natsort, python2-graphene): Likewise. * gnu/packages/statistics.scm (python2-statsmodels): Likewise.
2016-11-13Merge branch 'core-updates'Ludovic Courtès
2016-11-10gnu: r-rmarkdown: Remove phase "copy-files-without-mode".Ricardo Wurmus
This phase is no longer needed as upstream has merged the fix in the current release. * gnu/packages/statistics.scm (r-rmarkdown)[arguments]: Remove build phase "copy-files-without-mode".
2016-11-07Merge branch 'master' into core-updatesMark H Weaver
2016-11-06gnu: r-proto: Update project's home-page.ng0
* gnu/packages/statistics.scm (r-proto)[home-page]: Update project's home-page. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-11-06Merge branch 'master' into core-updatesMark H Weaver
2016-11-04gnu: r-nmf: Use bigmemory.Roel Janssen
* gnu/packages/statistics.scm (r-nmf)[propagated-inputs]: Add r-bigmemory and r-synchronicity.
2016-11-04gnu: Add r-bigmemory.Roel Janssen
* gnu/packages/statistics.scm (r-bigmemory): New variable.
2016-11-04gnu: Add r-synchronicity.Roel Janssen
* gnu/packages/statistics.scm (r-synchronicity): New variable.
2016-11-04gnu: Add r-bigmemory-sri.Roel Janssen
gnu/packages/statistics.scm (r-bigmemory-sri): New variable.
2016-11-03gnu: r-hmisc: Update to 4.0.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0.0. [propagated-inputs]: Add r-htmltable, r-htmltools, r-viridis, r-survival.
2016-11-03gnu: r-r-oo: Update to 1.21.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-r-oo): Update to 1.21.0.
2016-11-03gnu: r-openssl: Update to 0.9.5.Ricardo Wurmus
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.5.
2016-11-03gnu: r-checkmate: Update to 1.8.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.2.
2016-11-03gnu: r-acepack: Update to 1.4.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-acepack): Update to 1.4.1.
2016-11-03gnu: r-gdtools: Update to 0.1.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.1. [propagated-inputs]: Add r-withr.
2016-11-03gnu: r-proto: Update to 1.0.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-proto): Update to 1.0.0.
2016-11-03gnu: Add r-survival.Ricardo Wurmus
* gnu/packages/statistics.scm (r-survival): New variable.
2016-10-27Merge branch 'master' into core-updatesMark H Weaver
2016-10-27gnu: r: Use uname from GuixRoel Janssen
* gnu/packages/statistics.scm (r): Use uname from Guix.
2016-10-26Merge branch 'master' into core-updatesLeo Famulari
2016-10-26gnu: r: Update to 3.3.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r): Update to 3.3.1.
2016-10-26gnu: r-matrixstats: Update to 0.51.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.51.0.
2016-10-26gnu: r-r-utils: Update to 2.4.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-r-utils): Update to 2.4.0.
2016-10-26gnu: r-irlba: Update to 2.1.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-irlba): Update to 2.1.2.
2016-10-26gnu: r-codetools: Update to 0.2-15.Ricardo Wurmus
* gnu/packages/statistics.scm (r-codetools): Update to 0.2-15.
2016-10-26gnu: r-snow: Update to 0.4-2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-snow): Update to 0.4-2.
2016-10-26gnu: r-backports: Update to 1.0.4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-backports): Update to 1.0.4.
2016-10-26gnu: r-foreign: Update to 0.8-67.Ricardo Wurmus
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-67.
2016-10-26gnu: r-cluster: Update to 2.0.5.Ricardo Wurmus
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.5.
2016-10-26gnu: r-acepack: Update to 1.4.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-acepack): Update to 1.4.0.
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