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2020-03-06gnu: fmt: Fix home page.Tobias Geerinckx-Rice
* gnu/packages/pretty-print.scm (fmt)[home-page]: Update.
2020-03-06gnu: Order module imports in (gnu packages audio).Tobias Geerinckx-Rice
* gnu/packages/audio.scm: Order module imports alphabetically.
2020-03-06gnu: carla: Partially fix start-up.Tobias Geerinckx-Rice
This fixes <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=39942> but carla still fails to start. Reported by Nathan Dehnel <ncdehnel@gmail.com>. * gnu/packages/audio.scm (carla)[arguments]: Add ‘make-carla-executable’ phase.
2020-03-06gnu: dovecot: Update to 2.3.10.Tobias Geerinckx-Rice
* gnu/packages/mail.scm (dovecot): Update to 2.3.10.
2020-03-06gnu: Add gnome-boxes.Pierre Neidhardt
* gnu/packages/gnome.scm (gnome-boxes): New variable.
2020-03-06gnu: tracker-miners: Update to 2.3.2.Pierre Neidhardt
* gnu/packages/gnome.scm (tracker-miners): Update to 2.3.2.
2020-03-06gnu: tracker: Update to 2.3.2.Pierre Neidhardt
* gnu/packages/gnome.scm (tracker): Update to 2.3.2. [arguments]: Fix tests properly. [native-inputs]: Remove unneeded native-inputs. [inputs]: Remove unneeded inputs. [description]: Replace unclear description with more down to earth use cases. [license]: Replace lgpl2.0+ with bsd-3 to reflect update.
2020-03-06gnu: libvirt-glib: Update to 3.0.0.Pierre Neidhardt
* gnu/packages/virtualization.scm (libvirt-glib): Update to 3.0.0.
2020-03-06gnu: python-pygit2: Update to 1.1.0.Marius Bakke
* gnu/packages/python-xyz.scm (python-pygit2): Update to 1.1.0. [propagated-inputs]: Remove PYTHON-SIX and PYTHON-TOX. Add PYTHON-CACHED-PROPERTY. (python2-pygit2): Remove variable (Python 2 is no longer supported).
2020-03-06gnu: gitg: Remove redundant input.Marius Bakke
* gnu/packages/gnome.scm (gitg)[inputs]: Remove LIBGIT2.
2020-03-06gnu: libgit2-glib: Adjust inputs.Marius Bakke
* gnu/packages/gnome.scm (libgit2-glib)[native-inputs]: Move LIBSSH2 ... [inputs]: ... here. Move LIBGIT2 ... [propagated-inputs]: ... here. New field.
2020-03-06gnu: libgit2-glib: Update to 0.99.0.1.Marius Bakke
* gnu/packages/gnome.scm (libgit2-glib): Update to 0.99.0.1. [native-inputs]: Remove INTLTOOL.
2020-03-06gnu: r-modeltools: Update to 0.2-23.Ricardo Wurmus
* gnu/packages/statistics.scm (r-modeltools): Update to 0.2-23.
2020-03-06gnu: r-ggplot2: Update to 3.3.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.3.0. [propagated-inputs]: Remove r-lazyeval, r-reshape2, and r-viridislite; add r-glue and r-isoband.
2020-03-06gnu: Add r-isoband.Ricardo Wurmus
* gnu/packages/cran.scm (r-isoband): New variable.
2020-03-06gnu: r-bookdown: Update to 0.18.Ricardo Wurmus
* gnu/packages/cran.scm (r-bookdown): Update to 0.18.
2020-03-06gnu: r-fs: Update to 1.3.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-fs): Update to 1.3.2.
2020-03-06gnu: r-flextable: Update to 0.5.9.Ricardo Wurmus
* gnu/packages/cran.scm (r-flextable): Update to 0.5.9.
2020-03-06gnu: r-lava: Update to 1.6.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-lava): Update to 1.6.7.
2020-03-06gnu: Update python-scikit-learn to 0.22.1.Roel Janssen
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.22.1; Add python-joblib to native-inputs to run the test suite.
2020-03-06gnu: Add soci.Pierre Neidhardt
* gnu/packages/databases.scm (soci): New variable.
2020-03-06gnu: fmt: Update to 6.1.2.Pierre Neidhardt
* gnu/packages/pretty-print.scm (fmt): Update to 6.1.2.
2020-03-06gnu: fmt: Use HTTPS and git-fetch.Pierre Neidhardt
* gnu/packages/pretty-print.scm (fmt)[source]: Use git-fetch. [home-page]: Use HTTPS.
2020-03-06gnu: python-aiohttp: Update to 3.6.2.Ricardo Wurmus
* gnu/packages/python-web.scm (python-aiohttp): Update to 3.6.2.
2020-03-06gnu: python-scanpy: Update to 1.4.5.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.4.5.1. [source]: Fetch from pypi. [propagated-inputs]: Add python-legacy-api-wrap, python-packaging, python-patsy, and python-umap-learn. [native-inputs]: Add python-setuptools-scm.
2020-03-06gnu: Add python-legacy-api-wrap.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-legacy-api-wrap): New variable.
2020-03-06gnu: Add python-get-version.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-get-version): New variable.
2020-03-06gnu: Add python-pytest-black.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-pytest-black): New variable.
2020-03-06gnu: python-black: Update to 19.10b0.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-black): Update to 19.10b0. [arguments]: Patch tests. [propagated-inputs]: Add python-pathspec, python-regex, and python-typed-ast. [native-inputs]: Add python-setuptools-scm.
2020-03-06gnu: Add python-pathspec.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-pathspec): New variable.
2020-03-06gnu: python-tables: Use later hdf5 version.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-tables)[inputs]: Replace hdf5 with hdf5-1.10.
2020-03-06gnu: python-tables: Do not detect CPU features.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-tables)[arguments]: Add phase "disable-tuning".
2020-03-05gnu: java-openjfx-build: Add snippet.Björn Höfling
* gnu/packages/java.scm (java-openjfx-build)[source]: Add snippet to remove bundled gradle.
2020-03-05gnu: python-anndata: Update to 0.7.1.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-anndata): Update to 0.7.1. [arguments]: Move check phase after install phase; delete one test. [propagated-inputs]: Add python-importlib-metadata, python-numcodecs, python-packaging, and python-zarr. [native-inputs]: Add python-joblib, python-pytest, and python-setuptools-scm.
2020-03-05gnu: Add python-zarr.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-zarr): New variable.
2020-03-05gnu: Add python-asciitree.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-asciitree): New variable.
2020-03-05gnu: Add python-numcodecs.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-numcodecs): New variable.
2020-03-05gnu: python-h5py: Update to 2.10.0.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-h5py): Update to 2.10.0. [inputs]: Use hdf5-1.10. [native-inputs]: Add pkg-config.
2020-03-05gnu: Add emacs-ddskk.Masaya Tojo
* gnu/packages/emacs-xyz.scm (emacs-ddskk): New variable.
2020-03-05gnu: libraqm: Parametrize version.Nicolas Goaziou
* gnu/packages/fontutils.scm (libraqm)[source]: Parametrize version.
2020-03-05gnu: Add libraqm.Nicolas Goaziou
* gnu/packages/fontutils.scm (libraqm): New variable.
2020-03-05gnu: sbcl-cl-webkit: Update to 20200227.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (sbcl-cl-webkit): Update to 20200227.
2020-03-05gnu: Add guile-xapian.Arun Isaac
* gnu/packages/guile-xyz.scm (guile-xapian, guile3.0-xapian): New variables.
2020-03-05gnu: emacs-tldr: Update to 0-1.7203d1b.Arun Isaac
* gnu/packages/emacs-xyz.scm (emacs-tldr): Update to 0-1.7203d1b. [propagated-inputs]: Add emacs-request.
2020-03-05gnu: coq-mathcomp: Update home page URI.Björn Höfling
* gnu/packages/coq.scm (coq-mathcomp)[home-page]: Update URI.
2020-03-05gnu: squashfs-tools: Update home page URI.Björn Höfling
* gnu/packages/compression.scm (squashfs-tools)[home-page]: Update URI.
2020-03-05gnu: pbzip2: Use archived home-page.Björn Höfling
* gnu/packages/compression.scm (pbzip2)[home-page]: Load from archive.org
2020-03-05gnu: domainfinder: Update home page URI.Björn Höfling
* gnu/packages/chemistry.scm (domainfinder)[home-page]: Update URI.
2020-03-05gnu: nmoldyn: Upate home page URI.Björn Höfling
* gnu/packages/chemistry.scm (nmoldyn)[home-page]: Update URI.
2020-03-04gnu: SuiteSparse: Update to 5.7.1.Felix Gruber
* gnu/packages/maths.scm (suitesparse): Update to 5.7.1. [source]: The latest releases of SuiteSparse have only been published on GitHub. Fetch from git tag as GitHub releases page only contains autogenerated tarballs that guix lint complains about. Apply new patch for Mongoose's CMakeList.txt to find SuiteSparse_config. [arguments]: Add CMake flags used by new components GraphBLAS and Mongoose. [native-inputs]: Add CMake and m4 needed to build GraphBLAS and Mongoose. * gnu/packages/patches/suitesparse-mongoose-cmake.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Leo Famulari <leo@famulari.name>
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