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2020-03-11gnu: python-pybedtools: Update to 0.8.1.Efraim Flashner
* gnu/packages/bioinformatics.scm (python-pybedtools): Update to 0.8.1. [arguments]: Add another test to the 'disable-broken-tests phase. (python2-pybedtools)[native-inputs]: Add python2-pathlib.
2020-03-11gnu: Add python2-pygraphviz.Efraim Flashner
* gnu/packages/graphviz.scm (python2-pygraphviz): New variable.
2020-03-11gnu: python-pyfaidx: Update to 0.5.8.Efraim Flashner
* gnu/packages/bioinformatics.scm (python-pyfaidx): Update to 0.5.8.
2020-03-11gnu: Add python2-pyfaidx.Efraim Flashner
* gnu/packages/bioinformatics.scm (python2-pyfaidx): New variable.
2020-03-11gnu: python2-ipykernel: Downgrade to 4.10.1.Efraim Flashner
This is the last version actually supported by ipykernel. * gnu/packages/python-xyz.scm (python2-ipython): Downgrade to 4.10.1. [arguments]: Remove custom 'check phase. [propagated-inputs]: Add python2-tornado, python2-traitlets. [native-inputs]: Add python2-mock, python2-pytest-cov. (python-ipykernel)[properties): Declare python2-ipykernel as the python2- variant.
2020-03-11gnu: python-ipython: Declare python2 variant.Efraim Flashner
* gnu/packages/python-xyz.scm (python-ipython)[properties]: Declare python2-ipython as the python2- variant.
2020-03-11gnu: docker: Update to 19.03.7.Danny Milosavljevic
* gnu/packages/docker.scm (docker): Update to 19.03.7. (docker-cli): Update to 19.03.7.
2020-03-11gnu: r-ggsignif: Fix build.Roel Janssen
* gnu/packages/cran.scm (r-ggsignif): Add knitr to native-inputs in order to build the vignette.
2020-03-11gnu: t1lib: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/fontutils.scm (t1lib)[home-page]: Use HTTPS.
2020-03-11gnu: desktop-file-utils: Update to 0.24.Tobias Geerinckx-Rice
* gnu/packages/freedesktop.scm (desktop-file-utils): Update to 0.24.
2020-03-11gnu: desktop-file-utils: Don't use NAME in source URI.Tobias Geerinckx-Rice
* gnu/packages/freedesktop.scm (desktop-file-utils)[source]: Hard-code NAME.
2020-03-11gnu: you-get: Update to 0.4.1410.Tobias Geerinckx-Rice
* gnu/packages/video.scm (you-get): Update to 0.4.1410.
2020-03-11gnu: fortune-mod: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/games.scm (fortune-mod)[home-page]: Use HTTPS.
2020-03-11gnu: grue-hunter: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/games.scm (grue-hunter)[home-page]: Use HTTPS.
2020-03-11gnu: emulation-station: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/emulators.scm (emulation-station)[home-page]: Use HTTPS.
2020-03-11gnu: dfu-programmer: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/flashing-tools.scm (dfu-programmer)[home-page]: Use HTTPS.
2020-03-11gnu: rocksdb: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (rocksdb)[home-page]: Use HTTPS.
2020-03-11gnu: soundconverter: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/gnome.scm (soundconverter)[home-page]: Use HTTPS.
2020-03-11gnu: gd: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/gd.scm (gd)[home-page]: Use HTTPS.
2020-03-11gnu: python-tomlkit: Fix typos in descriptions.Tobias Geerinckx-Rice
* gnu/packages/python-xyz.scm (python-tomlkit)[synopsis, description]: Fix typos.
2020-03-11gnu: python-tomlkit: Update to 0.5.11.Tobias Geerinckx-Rice
* gnu/packages/python-xyz.scm (python-tomlkit): Update to 0.5.11.
2020-03-11gnu: gpxsee: Extend description.Tobias Geerinckx-Rice
* gnu/packages/gps.scm (gpxsee)[description]: Extend.
2020-03-11gnu: gpxsee: Update to 7.25.Tobias Geerinckx-Rice
* gnu/packages/gps.scm (gpxsee): Update to 7.25.
2020-03-11gnu: batctl: Update to 2020.0.Tobias Geerinckx-Rice
* gnu/packages/networking.scm (batctl): Update to 2020.0.
2020-03-11gnu: gimp: Update to 2.10.18.Tobias Geerinckx-Rice
* gnu/packages/gimp.scm (gimp): Update to 2.10.18.
2020-03-11gnu: gegl: Update to 0.4.22.Tobias Geerinckx-Rice
* gnu/packages/gimp.scm (gegl): Update to 0.4.22.
2020-03-11gnu: armagetronad: Update to 0.2.8.3.5.Tobias Geerinckx-Rice
* gnu/packages/games.scm (armagetronad): Update to 0.2.8.3.5.
2020-03-11gnu: gx: Update to 0.14.3.Tobias Geerinckx-Rice
* gnu/packages/ipfs.scm (gx): Update to 0.14.3.
2020-03-11gnu: nethack: Update to 3.6.6.Tobias Geerinckx-Rice
* gnu/packages/games.scm (nethack): Update to 3.6.6.
2020-03-11gnu: graphene: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/gtk.scm (graphene)[home-page]: Use HTTPS.
2020-03-11gnu: signify: Update to 29.Tobias Geerinckx-Rice
* gnu/packages/crypto.scm (signify): Update to 29.
2020-03-11gnu: execline: Update to 2.6.0.0.Tobias Geerinckx-Rice
* gnu/packages/skarnet.scm (execline): Update to 2.6.0.0.
2020-03-11gnu: freealut: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/audio.scm (freealut)[home-page]: Use HTTPS.
2020-03-11gnu: git-flow: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/version-control.scm (git-flow)[home-page]: Use HTTPS.
2020-03-11gnu: Use HTTPS for archive.xfce.org sources.Tobias Geerinckx-Rice
* gnu/packages/xfce.scm (gtk-xfce-engine, xfce4-xkb-plugin) (xfce4-settings, thunar, ristretto, orage, xfburn, mousepad) (xfce4-screenshooter, xfce4-screensaver, xfce4-cpugraph-plugin) (xfce4-eyes-plugin, xfce4-equake-plugin, xfce4-datetime-plugin) (xfce4-calculator-plugin, xfce4-cpufreq-plugin, xfce4-diskperf-plugin) (xfce4-embed-plugin, xfce4-fsguard-plugin, xfce4-genmon-plugin) (xfce4-kbdleds-plugin, xfce4-mailwatch-plugin, xfce4-mpc-plugin) (xfce4-mount-plugin, xfce4-netload-plugin, xfce4-places-plugin) (xfce4-smartbookmark-plugin, xfce4-statusnotifier-plugin) (xfce4-stopwatch-plugin, xfce4-systemload-plugin) (xfce4-time-out-plugin, xfce4-timer-plugin, xfce4-verve-plugin) (xfce4-wavelan-plugin, xfce4-weather-plugin))[source]: Use HTTPS.
2020-03-11gnu: xfce4-statusnotifier-plugin: Update to 0.2.2.Tobias Geerinckx-Rice
* gnu/packages/xfce.scm (xfce4-statusnotifier-plugin): Update to 0.2.2.
2020-03-11gnu: Use HTTPS for skarnet.org sources.Tobias Geerinckx-Rice
* gnu/packages/skarnet.scm (skalibs, execline, s6, s6-dns) (s6-networking, s6-rc, s6-portable-utils, s6-linux-init, s6-linux-utils) [source]: Use HTTPS.
2020-03-11gnu: skalibs: Update to 2.9.2.0.Tobias Geerinckx-Rice
* gnu/packages/skarnet.scm (skalibs): Update to 2.9.2.0.
2020-03-11gnu: s6-dns: Update to 2.3.2.0.Tobias Geerinckx-Rice
* gnu/packages/skarnet.scm (s6-dns): Update to 2.3.2.0.
2020-03-10gnu: Certbot, python-acme: Update to 1.3.0.Leo Famulari
* gnu/packages/tls.scm (certbot, python-acme): Update to 1.3.0.
2020-03-10gnu: java-osgi-namespace-contract: Update source URI.Björn Höfling
* gnu/packages/java.scm (java-osgi-namespace-contract)[source]: Update URI.
2020-03-10gnu: java-forester-1.005: Update source URI.Björn Höfling
* gnu/packages/bioinformatics.scm (java-forester-1.005)[source]: Update URI. [native-inputs]: Wrap long line.
2020-03-10gnu: java-jlargearrays: Update source URI.Björn Höfling
* gnu/packages/algebra.scm (java-jlargearrays)[source]: Update URI.
2020-03-10gnu: java-jtransforms: Update source URI.Björn Höfling
* gnu/packages/algebra.scm (java-jtransforms)[source]: Update URI.
2020-03-10gnu: hplip: Update to 3.20.3.Tobias Geerinckx-Rice
* gnu/packages/cups.scm (hplip): Update to 3.20.3.
2020-03-10gnu: ruby-minitest-rg: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/ruby.scm (ruby-minitest-rg)[home-page]: Use HTTPS.
2020-03-10gnu: python-wxpython: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/wxwidgets.scm (python-wxpython)[home-page]: Use HTTPS.
2020-03-10gnu: java-asm: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/java.scm (java-asm)[home-page]: Use HTTPS.
2020-03-10gnu: bash-tap: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/bash.scm (bash-tap)[home-page]: Use HTTPS.
2020-03-10gnu: tlp: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (tlp)[home-page]: Use HTTPS.
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