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2024-05-31gnu: slurm: Add patch for a useful fallback shell for ‘salloc’.Ludovic Courtès
* gnu/packages/patches/slurm-23-salloc-fallback-shell.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/parallel.scm (slurm): Use it. (slurm-22.05, slurm-21.08, slurm-20.11, slurm-20.02) (slurm-19.05, slurm-18.08): Drop it. Change-Id: I1498e8d21d631c988edf75a8bcc8d2ae5f244b7a
2024-05-31gnu: intel-mpi-benchmarks: Update to 2021.7.Ludovic Courtès
This fixes compilation with glibc 2.39. * gnu/packages/benchmark.scm (intel-mpi-benchmarks/openmpi): Update to 2021.7. Change-Id: I4fc32f4ff78ec104485dd5966cdf2d44942f0349
2024-05-31gnu: Add python-pybadges.Giacomo Leidi
* gnu/packages/python-web.scm (python-pybadges): New variable. Change-Id: Idd53ddf94b24112015c0a0b82396cf366920417e Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-05-31gnu: f3d: Update to 2.4.0.Artyom V. Poptsov
* gnu/packages/graphics.scm (f3d): Update to 2.4.0. [home-page]: Set to "https://f3d.app/" as the old page contains permanent redirect to it. Change-Id: Ia574725d31dcb181ced37b2debe24c033cb9094b Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
2024-05-31gnu: entr: Update to 5.5.Artyom V. Poptsov
* gnu/packages/entr.scm (entr): Update to 5.5. Change-Id: I8ef7c93750a9a3b51d64b678e3d041082558ef67 Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
2024-05-31gnu: aide: Update to 0.18.8.Artyom V. Poptsov
* gnu/packages/admin.scm (aide): Update to 0.18.8. [arguments]: Add configure flags to enable features "--with-posix-acl", "--with-selinux" and "--with-xattr". Add "--with-config-file=/etc/aide.conf" to instruct the program to use this patch to search for the configuration file. [native-inputs]: Add "pkg-config". [inputs]: Use "acl", "attr", "libselinux" and "pcre2". Change-Id: I15ae1d86ea9fdfed16e901c041bae292ec68a742 Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
2024-05-31gnu: icewm: Update to 3.5.0Andy Tai
* gnu/packages/wm.scm (icewm): update to 3.5.0. Change-Id: I4b4a7befd59e492896fceced0240e934b02c8e7e Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
2024-05-31gnu: parallel: Update to 20240522.Andy Tai
* gnu/packages/parallel.scm (parallel): Update to 20240522. Change-Id: If9d78b0a6f50fd22e2ca8d290209dc7a83cba772 Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
2024-05-31gnu: podman: Update to 5.1.0.Tomas Volf
* gnu/packages/containers.scm (podman): Update to 5.1.0. Change-Id: I87b3e639f1eb01e93363a359d33c2aaceaee653b Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
2024-05-31gnu: conmon: Update to 2.1.12.Tomas Volf
* gnu/packages/containers.scm (conmon): Update to 2.1.12. Change-Id: Ie5f5590b82467ef5a3cd981f1ba410c5bf8d9ff5 Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
2024-05-31gnu: weechat: Update to 4.3.0.Ashish SHUKLA
* gnu/packages/irc.scm (weechat): Update to 4.3.0. [input]: Add dependency on cjson. Change-Id: I30d326638430828c6967a6e6859120300b511a84 Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
2024-05-31gnu: Add python-celltypist.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-celltypist): New variable. Change-Id: I196b7a07955224fe4c641d79729f0facb6367adb
2024-05-30home: services: Add home-startx-command-service-type.Tomas Volf
* gnu/home/services/desktop.scm (home-startx-command-service-type): New variable. (startx-command-service-type): New service-type mapping. * doc/guix.texi (Guix Home Services): Document home-startx-command-service-type. Change-Id: Id38b5dc7b9235e04e3a9a1b70a35b02e8fae95f0 Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2024-05-30services: xorg: Add startx-command-service-type.Tomas Volf
* gnu/services/xorg.scm (startx-command-profile-service, startx-command-service-type): New variables. * doc/guix.texi (X Window): Document startx-command-service-type. Change-Id: Ia2a7c3b2d5ebf6bcfff40cb2640b17d3baf6eba0 Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2024-05-30gnu: lisp-xyz : Sort packages.jgart
* gnu/packages/lisp-xyz.scm: Sort packages. Change-Id: I2553a5134a8b60982aba7bb69a5e5c8efd7f8544
2024-05-30 gnu: Add cl-jose.jgart
* gnu/packages/lisp-xyz.scm (sbcl-jose, cl-jose, ecl-jose): Add new variables. Change-Id: I00b6d65ea53d11f151c4d41911536a48955d14af
2024-05-30gnu: Add cl-pem.jgart
* gnu/packages/lisp-xyz.scm (sbcl-pem, cl-pem, ecl-pem): Add new variables. Change-Id: I4840062e5454fb992cfc17edb44a24ed76114446
2024-05-30gnu: Add cl-asn1.jgart
* gnu/packages/lisp-xyz.scm (sbcl-asn1, cl-asn1, ecl-asn1): Add new variables. Change-Id: Id022e86de648f452c37b644c6e4728c91f373ad6
2024-05-30services: xorg: Add xorg-start-command-xinit procedure.Tomas Volf
When the user does not use any desktop environment, the typical sequence is to log in and then type `startx' into the tty to get a window manager running. Most distributions do provide a startx by default, but Guix has only an xorg-start-command that is not suitable for this. This commit adds a second procedure, xorg-start-command-xinit, that correctly picks a virtual terminal to use, sets up XAUTHORITY and starts xinit with the correct arguments. That should make running Guix without a desktop environment more approachable. * gnu/services/xorg.scm (xorg-start-command-xinit): New public procedure. * doc/guix.texi (X Window): Document it. Change-Id: I17cb16093d16a5c6550b1766754700d4fe014ae9 Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2024-05-30gnu: torbrowser: Fix typo in description.Arun Isaac
* gnu/packages/tor-browsers.scm (make-torbrowser)[description]: Fix typo changing "know" to "known". Change-Id: Ib4c1d1f183e7debbc769693f303caa141f2138b6
2024-05-30gnu: patch: Fix indentation.Maxim Cournoyer
* gnu/packages/base.scm (patch): Re-indent package. Change-Id: I97a5d8054ebacc779bead6093d150c44acdcc91c
2024-05-30gnu: git: Update to 2.45.1 [security fixes].Ashish SHUKLA
* gnu/packages/version-control.scm (git): Update to 2.45.1. Change-Id: Ia0634c6b0a4a3b5cc5c584ca064bbeb62b207c3e Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2024-05-30gnu: torbrowser: Update to 13.0.15 [security fixes].André Batista
Fixes CVEs 2024-4367, 2024-4767, 2024-4768, 2024-4769, 2024-4770 and 2024-4777. See the Mozilla Foundation Security Advisory <https://www.mozilla.org/en-US/security/advisories/mfsa2024-22/> for details. * gnu/packages/tor-browsers.scm (%torbrowser-locales): Update changesets. (%torbrowser-build-date): Update to 20240510150000. (%torbrowser-version): Update to 13.0.15. (%torbrowser-firefox-version): Update to 115.11.0esr-13.0-1-build2. (torbrowser-translation-base): Update to a28a8b2cb9e207d12fca11181818c0a0694b56af. (torbrowser-translation-specific): Update to e03ffdea5b74ad280616dccd21744cba7b2d4565. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2024-05-30gnu: Add python-yt.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-yt): New variable. Change-Id: Ic8331de39e0a5e875aef8d49b7597c269b2b155e Signed-off-by: Andrew Tropin <andrew@trop.in>
2024-05-30gnu: Add python-more-itertools-next.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-more-itertools-next): New variable. Change-Id: Ia9deef0c19931356446e2731a315d27ce54e6ab0 Signed-off-by: Andrew Tropin <andrew@trop.in>
2024-05-30gnu: Add python-comm.Sharlatan Hellseher
* gnu/packages/jupyter.scm (python-comm): New variable. Change-Id: I1bed7b6f54e63db6f47cdbaccd816c56f06045f8 Signed-off-by: Andrew Tropin <andrew@trop.in>
2024-05-30gnu: Add python-geopack.Sharlatan Hellseher
* gnu/packages/geo.scm (python-geopack): New variable. Change-Id: I674b09030684dd0d9f94b4b87cf96aeea983ee89 Signed-off-by: Andrew Tropin <andrew@trop.in>
2024-05-30gnu: Add python-viresclient.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-viresclient): New variable. Change-Id: I690a6d8f1fc80dde1605f50d09f540d556fa881b Signed-off-by: Andrew Tropin <andrew@trop.in>
2024-05-30gnu: python-ewah-bool-utils: Update to 1.2.0.Sharlatan Hellseher
* gnu/packages/python-compression.scm (python-ewah-bool-utils): Update to 1.2.0. Change-Id: I7bc50249f2d7e97c64d23054ad176cf0e4af6258 Signed-off-by: Andrew Tropin <andrew@trop.in>
2024-05-30gnu: python-unyt: Fix version detection.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-unyt): Fix version detection. [native-inputs]: Add python-setuptools-scm. Change-Id: I96e7d2530b15299a39911bebf62b76a9191ea91b Signed-off-by: Andrew Tropin <andrew@trop.in>
2024-05-30gnu: python-specutils: Update to 1.15.0.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-specutils): Update to 1.15.0. Change-Id: I43f19ce39574a497097f4605dc2a18f6fd6343e9 Signed-off-by: Andrew Tropin <andrew@trop.in>
2024-05-30gnu: python-stsci-image: Update to 2.3.7.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-stsci-image): Update to 2.3.7. Change-Id: Icd3c8d2b893e9eb83820912a0f6afe855330aa97 Signed-off-by: Andrew Tropin <andrew@trop.in>
2024-05-30gnu: python-sunpy: Update to 5.1.3.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-sunpy): Update to 5.1.3. Change-Id: If025ccc8435202a6bf50cf1e48d1955c51a78a34 Signed-off-by: Andrew Tropin <andrew@trop.in>
2024-05-30gnu: python-roman-datamodels: Update to 0.20.0.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-roman-datamodels): Update to 0.20.0. Adjust indentation. Change-Id: I6bd533d81a0c8b6f2cc183e274190ff7042e965f Signed-off-by: Andrew Tropin <andrew@trop.in>
2024-05-30gnu: python-rad: Update to 0.20.0Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-rad): Update to 0.20.0. Adjust indentation. Change-Id: I5921c5153ace1032313121c00c73423f3d1e7c84 Signed-off-by: Andrew Tropin <andrew@trop.in>
2024-05-30gnu: python-jplephem: Update to 2.22.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-jplephem): Update to 2.22. Change-Id: I87c1d7e61438634fa1562c5ab42ca2f90ae588a4 Signed-off-by: Andrew Tropin <andrew@trop.in>
2024-05-30gnu: python-crds: Update to 11.17.22.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-crds): Update to 11.17.22. Adjust indentation. [native-inputs]: Remove python-flake8, python-ipython, python-lockfile, python-mock, python-nose, python-pylint, and python-pytest. Change-Id: Idbbece6544755753dce2046292d2552924992959 Signed-off-by: Andrew Tropin <andrew@trop.in>
2024-05-30gnu: python-cdflib: Update to 1.3.1.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-cdflib): Update to 1.3.1. [propagated-inputs]: Remove python-attrs. Change-Id: I13abd2608c18796e6d8d5d37bee0a037fbd2794d Signed-off-by: Andrew Tropin <andrew@trop.in>
2024-05-30gnu: python-ccdproc: Update to 2.4.2.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-ccdproc): Update to 2.4.2. Change-Id: Ic6be0d26ae6f612c9b57fd88b0458496c28b353a Signed-off-by: Andrew Tropin <andrew@trop.in>
2024-05-30gnu: python-dust-extinction: Update to 1.4.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-dust-extinction): Update to 1.4. Change-Id: I335f9ae01c022c6bea229b73f131aab459126809 Signed-off-by: Andrew Tropin <andrew@trop.in>
2024-05-30gnu: python-astroscrappy: Update to 1.2.0.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-astroscrappy): Update to 1.2.0. [native-inputs]: Remove python-cython, python-h5py, python-pandas, and python-scikit-image; add python-cython-3. Change-Id: I8008d35e94f9076c489709ad241f97dec6e22b2a Signed-off-by: Andrew Tropin <andrew@trop.in>
2024-05-30gnu: python-pyvo: Disable a failing test.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-pyvo) [arguments]: <#:test-flags>: Disable one failing test. Change-Id: I662a08126991c7db1f37d9ae04160f5a926d443f Signed-off-by: Andrew Tropin <andrew@trop.in>
2024-05-30gnu: python-astropy: Update to 6.1.0.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-astropy): Update to 6.1.0. Change-Id: I72bbbec2df8fb6aba884c0700a977b34b3d8beec Signed-off-by: Andrew Tropin <andrew@trop.in>
2024-05-30gnu: python-astropy-iers-data: Update to 0.2024.5.13.0.30.12.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-astropy-iers-data): Update to 0.2024.5.13.0.30.12. Change-Id: Iac104aea31b967d902f424f3257a07c30d245007 Signed-off-by: Andrew Tropin <andrew@trop.in>
2024-05-30gnu: calceph: Update to 4.0.0.Sharlatan Hellseher
* gnu/packages/astronomy.scm (calceph): Update to 4.0.0. [source]: Swap to git checkout. [build-system]: Swap to cmake-build-system. [properties]: Remove them. Change-Id: Ic1559a1f956aa90200c911fbee057c55a7fb9874 Signed-off-by: Andrew Tropin <andrew@trop.in>
2024-05-30gnu: packages/astronomy: Minimize import from python build system.Sharlatan Hellseher
* gnu/packages/astronomy.scm: Select just pypi-uri from python build system module. Change-Id: I1b02cdd24a6456d58136ee126f7bdb2a01dce9b4 Signed-off-by: Andrew Tropin <andrew@trop.in>
2024-05-30gnu: python-sgp4: Use pyproject-build-system.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-sgp4): [build-system]: Swap to pyproject-build-system. Change-Id: Iebaba503a439d858f1e603ab3f7e4bd17be2adb1 Signed-off-by: Andrew Tropin <andrew@trop.in>
2024-05-30gnu: python-ephem: Use pyproject-build-system.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-ephem): Adjust indentation. [build-system]: Swap to pyproject-build-system. Change-Id: Idc21c004f93f2362a70b2e9fb874ff125fd8c3fa Signed-off-by: Andrew Tropin <andrew@trop.in>
2024-05-30gnu: python-sep: Refresh package style.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-sep): Refresh package style. [package]: Swap to package/inherit. [build-system]: Swap to pyproject-build-system. [arguments]: <#:test-flags>: Activate tests for Python. [native-inputs]: Do not modify inherited inputs, override instead. Add python-pytest. [propagated-inputs]: Override inputs. [synopsis]: Add Python specific synopsis. Change-Id: I86f68972eb51e9d546bcba6ee4f33de726c022e2 Signed-off-by: Andrew Tropin <andrew@trop.in>
2024-05-30gnu: gcc-13: Remove unneeded patch for i586-gnu.Efraim Flashner
* gnu/packages/gcc.scm (gcc-13)[arguments]: When building for i586-gnu delete the inherited phase 'patch-hurd-libpthread as it exists upstream. Change-Id: I0837dcff325b15b6975b34dbd7268faaa223ecdd
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