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2021-08-30gnu: python-scikit-learn: Update to 0.24.2.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.24.2. [arguments]: Remove trailing #t.
2021-08-30gnu: python-anndata: Fetch sources from git.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-anndata)[source]: Fetch from git to include test data. [arguments]: Enable tests. Do not let setuptools_scm guess the version.
2021-08-30gnu: python-scanpy: Update to 1.8.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.8.1. [arguments]: Bulid with flit; update list of broken tests. [native-inputs]: Add python-flit and python-anndata:source.
2021-08-30gnu: Add python-jupyter-server.Ricardo Wurmus
* gnu/packages/jupyter.scm (python-jupyter-server): New variable.
2021-08-30gnu: Add python-anyio.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-anyio): New variable.
2021-08-30gnu: Add python-pytest-mock-3.Ricardo Wurmus
* gnu/packages/check.scm (python-pytest-mock-3): New variable.
2021-08-30gnu: Add python-pytest-tornasync.Ricardo Wurmus
* gnu/packages/python-check.scm (python-pytest-tornasync): New variable.
2021-08-30gnu: Add python-pytest-console-scripts.Ricardo Wurmus
* gnu/packages/python-check.scm (python-pytest-console-scripts): New variable.
2021-08-30gnu: Add python-dna-features-viewer.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-dna-features-viewer): New variable.
2021-08-30gnu: Add python-svgutils.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-svgutils): New variable.
2021-08-30gnu: Add python-pybbi.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-pybbi): New variable.
2021-08-30gnu: wine: Update to 6.16.Leo Prikler
* gnu/packages/wine.scm (wine): Update to 6.16.
2021-08-30gnu: Add h-client.Denis 'GNUtoo' Carikli
* gnu/packages/hardware.scm (h-client): New variable. Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-08-30gnu: wine: Update to 6.14.Leo Prikler
* gnu/packages/wine.scm (wine): Update to 6.14. [#:phases]: Patch Makefile to correctly locate ntdll.so. (wine64)[#:phases]: Likewise.
2021-08-30gnu: Add ocaml-odoc-parser.Xinglu Chen
* gnu/packages/ocaml.scm (ocaml-odoc-parser): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-08-30gnu: scrot: Update to 1.6.Ludovic Courtès
* gnu/packages/xdisorg.scm (scrot): Update to 1.6. [native-inputs]: Add PKG-CONFIG. [inputs]: Add IMLIB2.
2021-08-30build: Build (gnu packages rocm).Ludovic Courtès
This is a followup to df90cb1d5c82cc83a305f6323f867f14e30ce240. * gnu/local.mk (GNU_SYSTEM_MODULES): Add %D%/packages/rocm.scm.
2021-08-30services: hurd-vm: Use the new 'targets' field of <bootloader-configuration>.Ludovic Courtès
* gnu/services/virtualization.scm (%hurd-vm-operating-system): Use 'targets' instead of 'target' for the 'bootloader-configuration' field.
2021-08-30bootloader: Report location of the deprecated 'target' field.Ludovic Courtès
This is a followup to 2ca982ff41270288913ad6b7d5d9e1cad87b06d9. * gnu/bootloader.scm (warn-target-field-deprecation): New macro. (<bootloader-configuration>)[target]: Add 'sanitize' property. (%warn-target-field-deprecation): New procedure. (bootloader-configuration-target): Define using 'define-deprecated'. (bootloader-configuration-targets): Use '%bootloader-configuration-target' rather than the deprecated one.
2021-08-30build: Build (gnu system setuid).Ludovic Courtès
This is a followup to 45235e67e4aeac96ad8d60265bef054990aeb425. * gnu/local.mk (GNU_SYSTEM_MODULES): Add %D%/system/setuid.scm.
2021-08-30gnu: extra-cmake-modules: Avoid dependency on qtbase when on armhf.Ludovic Courtès
* gnu/packages/kde-frameworks.scm (extra-cmake-modules)[native-inputs]: Remove QTBASE-5 on armhf-linux. [arguments]: Set #:tests? accordingly.
2021-08-30services: xorg: Delay the xorg-configuration-modules field evaluation.Mathieu Othacehe
When building an image with the "system" parameter set to an emulated architecture, the xorg-configuration-modules field needs to be evaluated once the %current-system parameter is set, otherwise this parameter is set to the current host system. * gnu/services/xorg.scm (<xorg-configuration>)[modules]: Make it a thunked field.
2021-08-30gnu: guile-websocket: Update to 0.1-d17878f6.Jan (janneke) Nieuwenhuizen
* gnu/packages/guile-xyz.scm (guile-websocket)[source]: Update to 0.1-d17878f6. Use https:// url. [phases]: Remove "update-guile-version" stage. [native-inputs]: Add pkg-config.
2021-08-29gnu: Add emacs-helm-xref.Pierre Langlois
* gnu/packages/emacs-xyz.scm (emacs-helm-xref): New variable.
2021-08-29gnu: mu: Update to 1.6.5.Pierre Langlois
* gnu/packages/mail.scm (mu): Update to 1.6.5.
2021-08-29gnu: shadow: Use the cross-compiled shell at runtime.Mathieu Othacehe
Make sure that the executed shell at runtime is the cross-compiled shell and not the native shell. * gnu/packages/admin.scm (shadow)[arguments]: Add a set-runtime-shell phase. [inputs]: Add bash-minimal when cross-compiling.
2021-08-29gnu: Add emacs-hideshowvis.Oleg Pykhalov
* gnu/packages/emacs-xyz.scm (emacs-hideshowvis): New variable.
2021-08-29gnu: rofi: Update to 1.7.0.Brice Waegeneire
* gnu/packages/xdisorg.scm (rofi): Update to 1.7.0. [inputs]: Add xcb-util-cursor. [source]<origin>, [home-page]: Change URL to the redirected one.
2021-08-29isc-dhcp: Fix dhclient-script wrapper when cross-compiling.Maxime Devos
This causes many rebuilds, but only when cross-compiling. This should unbreak Internet access on cross-compiled pinebook images. Reported-By: Guest4977 (on IRC) * gnu/gnunet/packages/admin.scm (isc-dhcp)[arguments]<#:phases>{post-install}: Use the cross-compiled bash when cross-compiling. Work-around <https://issues.guix.gnu.org/49290>. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-08-29services: Remove i486 qemu target.Efraim Flashner
The i486 target has been removed from qemu since at least 5.2.0. * gnu/services/virtualization.scm (%i486): Remove variable. (%qemu-platforms): Remove it.
2021-08-29services: base: Honor file-system-create-mount-point? at all times.Maxim Cournoyer
Fixes <https://issues.guix.gnu.org/40158>. * gnu/services/base.scm (file-system-shepherd-service): Update doc. Return a shepherd service for the mount point when either MOUNT? or CREATE? is true. [start]: Only mount when MOUNT? is true. (file-system-shepherd-services): Also consider file systems with create-mount-point? set to #t.
2021-08-29gnu: python-pytest-django: Update to 4.4.0.Maxim Cournoyer
* gnu/packages/django.scm (python-pytest-django): Update to 4.4.0. [tests?]: Disable test suite. [native-inputs]: Replace python-pytest-xdist by python-pytest-xdist-next. [home-page]: Update home page.
2021-08-29gnu: python-django: Update to 3.2.6.Maxim Cournoyer
* gnu/packages/django.scm (python-django): Update to 3.2.6.
2021-08-29gnu: ansible: Update to 4.4.0.Maxim Cournoyer
* gnu/packages/admin.scm (ansible): Update to 4.4.0. [native-inputs]: Remove field. [inputs]: Likewise. [arguments]: Likewise. [propagated-inputs]: New field. [native-search-paths]: New search path. [description]: Update description.
2021-08-29gnu: Add ansible-core.Maxim Cournoyer
* gnu/packages/admin.scm (ansible-core): New variable.
2021-08-29gnu: Add python-pytest-xdist-next.Maxim Cournoyer
* gnu/packages/check.scm (python-pytest-xdist-next): New variable.
2021-08-29gnu: python-pytest-xdist: Fix by downgrading to 1.34.0, run test suite.Maxim Cournoyer
Commit ed72e558313 updated the package to 2.1.0, but this version doesn't work with Pytest 5, the version currently used in Guix. Downgrade to the last version that is compatible with Pytest 5. * gnu/packages/check.scm (python-pytest-xdist): Downgrade to 1.34.0, with a comment explaining why. Strip trailing #t. [source]: Remove origin modules and snippet field, no longer necessary. [phases]{check}: Override to run the test suite. [propagated-inputs]: Remove python-py and add python-pytest-forked.
2021-08-29gnu: python-pytest-mock: Update to 3.6.1 and run test suite.Maxim Cournoyer
* gnu/packages/check.scm (python-pytest-mock): Update to 3.6.1. [phases]{check}: Override to run test suite. [propagated-inputs]: Add python-pytest-asyncio.
2021-08-29gnu: python-pytest-asyncio: Enable tests and patch for Python 3.8.Maxim Cournoyer
* gnu/packages/patches/python-pytest-asyncio-python-3.8.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/check.scm (python-pytest-asyncio) [source]: Fetch from git and apply above patch. [phases]: Override the check phase, enabling tests.
2021-08-29gnu: python-pytest-forked: Update to 1.3.0 and run test suite.Maxim Cournoyer
* gnu/packages/check.scm (python-pytest-forked)[origin]: Use git. [phases]{disable-setuptools-scm}: New phase. {check}: Override phase. [propagated-inputs]: Remove field. [native-inputs]: Remove ??? and add python-pytest-bootstrap. [home-page]: Fix indentation. [synopsis]: Update. [description]: Expound.
2021-08-29gnu: python-py-next: Update to 1.10.0.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-py-next): Update to 1.10.0.
2021-08-29gnu: python-mock: Update description.Maxim Cournoyer
* gnu/packages/check.scm (python-mock) [description]: Mention this library is now part of Python 3.3 onward.
2021-08-29gnu: python-rope: Update to 0.19.0 and remove python2-rope.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-rope): Update to 0.19.0. [source]: Fix indentation. [arguments]: Remove. [native-inputs]: Remove. [license]: Correct license. (python2-rope): Delete variable.
2021-08-29gnu: python-execnet: Update to 1.9.0 and enable tests.Maxim Cournoyer
* gnu/packages/patches/python-execnet-read-only-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/python-xyz.scm (python-execnet): Update to 1.9.0. [source]: Fix indentation. [arguments]: Enable tests, replacing the default check phase.
2021-08-29gnu: python-pytest-6: Update to 6.2.4 and propagate iniconfig.Maxim Cournoyer
* gnu/packages/check.scm (python-pytest-6): Update to 6.2.4. Fix typo. Removing trailing #t. [native-inputs]: Delete the extraneous python-mock input. Move python-iniconfig to... [propagated-inputs]: ... here.
2021-08-29gnu: Add python-pyspnego.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-pyspnego): New variable.
2021-08-29gnu: Add python-ncclient.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-ncclient): New variable.
2021-08-29gnu: Add python-resolvelib-0.5.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-resolvelib-0.5): New variable.
2021-08-29gnu: Add python-resolvelib.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-resolvelib): New variable.
2021-08-29gnu: Add python-commentjson.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-commentjson): New variable.
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