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2016-02-12gnu: macs: Update to 2.1.0.20151222.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (macs): Update to 2.1.0.20151222.
2016-02-12gnu: macs: Use "pypi-uri".Ricardo Wurmus
* gnu/packages/bioinformatics.scm (macs)[source]: Use "pypi-uri" to build source URI.
2016-02-12gnu: python2-fastlmm: Update to 0.2.21.Ricardo Wurmus
* gnu/packages/python.scm (python2-fastlmm): Update to 0.2.21.
2016-02-12gnu: python2-pysnptools: Update to 0.3.5.Ricardo Wurmus
* gnu/packages/python.scm (python2-pysnptools): Update to 0.3.5.
2016-02-12gnu: python-numpy-bootstrap: Update to 1.10.4.Ricardo Wurmus
* gnu/packages/python.scm (python-numpy-bootstrap): Update to 1.10.4.
2016-02-12gnu: python-pandas: Update to 0.16.2.Ricardo Wurmus
* gnu/packages/python.scm (python-pandas): Update to 0.16.2.
2016-02-12gnu: Add gnunet-gtk.Ni* Gillmann
* gnu/packages/gnunet.scm (gnunet-gtk): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2016-02-12gnu: gnunet: Add gstreamer and plugins to inputs.Ricardo Wurmus
* gnu/packages/gnunet.scm (gnunet)[inputs]: Add "gstreamer" and "gst-plugins-base".
2016-02-11install: Add btrfs-progs to the image.Tobias Geerinckx-Rice
* gnu/system/install.scm (installation-os)[packages]: Add BTRFS-PROGS. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-02-11gnu: Add btrfs-progs.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (btrfs-progs): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-02-11Revert "gnu: nginx: Update to 1.9.11. [fixes CVE-2016-{0742, 0746, 0747}]"Mark H Weaver
This reverts commit 759246ad48c585621355e8c32bf3596ef9cd356f.
2016-02-11gnu: icecat: Update bundled graphite2 to 1.3.5 for security fixes.Mark H Weaver
* gnu/packages/patches/icecat-update-graphite2.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/gnuzilla.scm (icecat)[source]: Add patch. Add TODO comment about using the system graphite2 in the future.
2016-02-11gnu: nginx: Update to 1.9.11. [fixes CVE-2016-{0742, 0746, 0747}]Efraim Flashner
* gnu/packages/web.scm (nginx): Update to 1.9.11.
2016-02-11gnu: feh: Update to 2.14.1.Efraim Flashner
* gnu/packages/feh.scm (feh): Update to 2.14.1.
2016-02-11gnu: obs: Update to 0.13.1.Efraim Flashner
* gnu/packages/video.scm (obs): Update to 0.13.1.
2016-02-11gnu: fribidi: Update to 0.19.7.Efraim Flashner
* gnu/packages/fribidi.scm (fribidi): Update to 0.19.7.
2016-02-11gnu: alsa-utils: Update to 1.1.0.Efraim Flashner
* gnu/packages/linux.scm (alsa-utils): Update to 1.1.0.
2016-02-11gnu: zynaddsubfx: Update to 2.5.3.Ricardo Wurmus
* gnu/packages/music.scm (zynaddsubfx): Update to 2.5.3.
2016-02-11gnu: htop: Update to 2.0.0.Leo Famulari
* gnu/packages/admin.scm (htop): Update to 2.0.0.
2016-02-10gnu: Add notmuch-addrlookup-c.Al McElrath
* gnu/packages/mail.scm (notmuch-addrlookup-c): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-02-10install: Do not cache lookup failures.Ludovic Courtès
Possibly fixes <http://bugs.gnu.org/22209>. * gnu/system/install.scm (%nscd-minimal-caches)[negative-time-to-live]: Set to zero.
2016-02-10gnu: Fix syntax error in postgresql-service.Leo Famulari
Fixes <http://bugs.gnu.org/22618>. Reported by Danny Milosavljevic <dannym@scratchpost.org>. * gnu/services/databases.scm (%default-postgres-config): Add missing quote in default configuration.
2016-02-10gnu: mit-krb5: Update to 1.13.3; add fixes for CVE-2015-{8629,8630,8631}.Mark H Weaver
* gnu/packages/patches/mit-krb5-CVE-2015-2695-pt1.patch, gnu/packages/patches/mit-krb5-CVE-2015-2695-pt2.patch, gnu/packages/patches/mit-krb5-CVE-2015-2696.patch, gnu/packages/patches/mit-krb5-CVE-2015-2697.patch, gnu/packages/patches/mit-krb5-CVE-2015-2698-pt1.patch, gnu/packages/patches/mit-krb5-CVE-2015-2698-pt2.patch: Delete files. * gnu/packages/patches/mit-krb5-CVE-2015-8629.patch, gnu/packages/patches/mit-krb5-CVE-2015-8630.patch, gnu/packages/patches/mit-krb5-CVE-2015-8631.patch, gnu/packages/patches/mit-krb5-init-context-null-spnego.patch: New files. * gnu-system.am (dist_patch_DATA): Adjust accordingly. * gnu/packages/mit-krb5.scm (mit-krb5): Update to 1.13.3. [source]: Update URI to download conventional .tar.gz file. Add patches. [native-inputs]: Remove old patches-as-inputs. [arguments]: Remove hacks needed to cope with the older unconventional tarball that contained an inner source tarball and signature: Remove #:modules argument, and the custom 'unpack' and 'apply-patches' phases.
2016-02-10gnu: nettle: Update to 3.2 [fixes CVE-2015-{8803,8804,8805}].Mark H Weaver
* gnu/packages/nettle.scm (nettle): Update to 3.2.
2016-02-10gnu: haunt: Wrap 'haunt' command so that it finds its modules.Ludovic Courtès
* gnu/packages/guile.scm (haunt)[arguments]: New field.
2016-02-10system: Selected locale is automatically built.Ludovic Courtès
Fixes <http://bugs.gnu.org/22572>. Reported by Mark H Weaver <mhw@netris.org>. * gnu/system/locale.scm (%not-dot): New variable. (denormalize-codeset, locale-name->definition): New procedures. * gnu/system.scm (locale-name->definition*): New procedure. (operating-system-locale-directory): Instead of raising an error, add the missing locale. * doc/guix.texi (Locales): Adjust accordingly.
2016-02-10gnu: emacs-debbugs: Update to 0.9.Alex Kost
* gnu/packages/emacs.scm (emacs-debbugs): Update to 0.9. [propagated-inputs]: Add 'emacs-async'.
2016-02-10gnu: Add emacs-async.Alex Kost
* gnu/packages/emacs.scm (emacs-async): New variable.
2016-02-10gnu: magit: Update to 2.5.0.Alex Kost
* gnu/packages/emacs.scm (magit): Update to 2.5.0. [propagated-inputs]: Add 'emacs-with-editor'. [arguments]: Make with WITH_EDITOR_DIR.
2016-02-10gnu: Add emacs-with-editor.Alex Kost
* gnu/packages/emacs.scm (emacs-with-editor): New variable.
2016-02-09gnu: Add munge.Pjotr Prins
* gnu/packages/admin.scm (munge): New variable.
2016-02-08gnu: acme: Disable egg compression.Leo Famulari
* gnu/packages/python.scm (acme)[arguments]: Add 'disable-egg-compression' phase.
2016-02-08gnu: letsencrypt and acme: Update to 0.3.0.Leo Famulari
These packages should be updated together. * gnu/packages/tls.scm (letsencrypt): Update to 0.3.0. (acme): Update to 0.3.0.
2016-02-08youtube-dl: Update to 2016.02.05.1.David Thompson
* gnu/packages/video.scm (youtube-dl): Update to 2016.02.05.1.
2016-02-08system: Add Texinfo to '%base-packages'.Ludovic Courtès
Fixes <http://bugs.gnu.org/22598>. Reported by myglc2 <myglc2@gmail.com>. * gnu/system.scm (%base-packages): Add TEXINFO.
2016-02-08linux-container: Accept file systems with a UUID 'source'.Ludovic Courtès
* gnu/system/linux-container.scm (containerized-operating-system)[user-file-systems]: Check whether SOURCE is a string before calling 'string-prefix?'.
2016-02-08file-systems: Spawn a Bournish REPL upon fsck failure.Ludovic Courtès
Fixes <http://bugs.gnu.org/22588>. Reported by Mark H Weaver <mhw@netris.org>. * gnu/build/file-systems.scm (check-file-system): Pass %BOURNISH-LANGUAGE as the argument to 'start-repl'. * gnu/services.scm (activation-script): Add (guix build bournish). * gnu/services/base.scm (file-system-shepherd-service)[imported-modules]: Likewise. * gnu/system/linux-container.scm (container-script): Likewise. * gnu/system/vm.scm (expression->derivation-in-linux-vm): Likewise.
2016-02-08Add (guix build bournish) and use it in the initrd.Ludovic Courtès
* guix/build/bournish.scm: New file. * Makefile.am (MODULES): Add it. * gnu/system/linux-initrd.scm (base-initrd): Add (guix build bournish) and use it.
2016-02-08gnu: add lispf4Nils Gillmann
* gnu/packages/lisp.scm (lispf4): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-02-08gnu: dbus: Use https source URL.Mark H Weaver
* gnu/packages/glib.scm (dbus)[source]: Use https URL.
2016-02-08gnu: Add nautilus.Rene Saavedra
* gnu/packages/gnome.scm (nautilus): New variable. Co-authored-by: 宋文武 <iyzsong@gmail.com>
2016-02-08gnu: python-pillow: Update to 3.1.1 [fixes CVE-2016-{0740, 0775}].Leo Famulari
* gnu/packages/python.scm (python-pillow, python2-pillow): Update to 3.1.1.
2016-02-07gnu: Add assword.Christopher Allan Webber
* gnu/packages/password-utils.scm (assword): New variable.
2016-02-07gnu: Add python2-xdo.Christopher Allan Webber
* gnu/packages/python.scm (python2-xdo): New variable.
2016-02-07gnu: python-matplotlib: Define 'python2-variant'.Ludovic Courtès
* gnu/packages/python.scm (python2-numpy): Take the result of 'package-with-python2' directly. (python2-scipy): Likewise. (python-matplotlib)[properties]: New field. (python2-matplotlib): Call 'strip-python2-variant'.
2016-02-07gnu: python-cython: Define 'python2-variant'.Ludovic Courtès
* gnu/packages/python.scm (python-cython)[properties]: New field. (python2-cython): Use 'strip-python2-variant'.
2016-02-07gnu: python-pycairo: Define 'python2-variant'.Ludovic Courtès
* gnu/packages/gtk.scm (python-pycairo)[properties]: New field. (python2-pycairo): Use 'strip-python2-variant'.
2016-02-07gnu: python-pygobject: Define 'python2-variant'.Ludovic Courtès
* gnu/packages/glib.scm (python-pygobject)[properties]: New field. (python2-pygobject): Use 'strip-python2-variant'.
2016-02-07gnu: upower: Install man pages.Ludovic Courtès
* gnu/packages/gnome.scm (upower)[native-inputs]: Add LIBXML2, LIBXSLT, and DOCBOOK-XSL.
2016-02-07gnu: keepassx: Update to 2.0.2.Efraim Flashner
* gnu/packages/password-utils.scm (keepassx): Update to 2.0.2.
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