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2018-03-03gnu: sdl2: Update to 2.0.8.Tobias Geerinckx-Rice
* gnu/packages/sdl.scm (sdl2): Update to 2.0.8.
2018-03-03gnu: r-httpuv: Update to 1.3.6.2.Ricardo Wurmus
* gnu/packages/web.scm (r-httpuv): Update to 1.3.6.2.
2018-03-03gnu: r-dbi: Update to 0.8.Ricardo Wurmus
* gnu/packages/statistics.scm (r-dbi): Update to 0.8.
2018-03-03gnu: r-performanceanalytics: Update to 1.5.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-performanceanalytics): Update to 1.5.2. [propagated-inputs]: Add r-quadprog. [native-inputs]: Remove gfortran.
2018-03-03linux-initrd: Add virtio modules to '%base-initrd-modules'.Ludovic Courtès
Fixes a regression in installation tests, whereby 'guix system init' would report that virtio modules are missing for the target devices. In practice virtio modules were always available since 'base-initrd' was always called with #:virtio? #t. This commit simply moves them to '%base-initrd-modules' so that 'guix system' knows they're available. Reported by Danny Milosavljevic <dannym@scratchpost.org> at <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=30629#112>. * gnu/system/linux-initrd.scm (default-initrd-modules): Add virtio modules. (base-initrd): Remove #:virtio? and 'virtio-modules'. * gnu/system/vm.scm (expression->derivation-in-linux-vm) (system-qemu-image, virtualized-operating-system): Remove uses of #:virtio?. * doc/guix.texi (Initial RAM Disk): Update 'base-initrd' doc.
2018-03-03system: beaglebone-black: Use 'initrd-modules'.Ludovic Courtès
* gnu/system/examples/beaglebone-black.tmpl: Use 'initrd-modules' instead of 'initrd'.
2018-03-03vm: Add missing modules to the 'expression->derivation-in-linux-vm' initrd.Ludovic Courtès
Fixes a regression introduced in bc499b113a598c0e7863da9887a4133472985713, whereby the default initrd used by 'expression->derivation-in-linux-vm' would lack all the usual modules: virtio, nls_iso8859-1, etc. * gnu/system/vm.scm (expression->derivation-in-linux-vm): Pass #:linux-modules to 'base-initrd'.
2018-03-03linux-initrd: 'file-system-modules' returns the right module list.Ludovic Courtès
Fixes a bug whereby, for an "iso9660" file system, it would return '("iso9660" "isofs"), i.e., both the key and the value. Reported by Danny Milosavljevic <dannym@scratchpost.org> at <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=30629#115>. * gnu/system/linux-initrd.scm (lookup-procedure): 'vhash-assoc' returns a key/value pair; match it.
2018-03-02gnu: cutadapt: Update to 1.16.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (cutadapt): Update to 1.16. [source]: Fetch via git. [arguments]: Remove. [native-inputs]: Replace python-nose with python-pytest.
2018-03-02gnu: python-xopen: Update to 0.3.2.Ricardo Wurmus
* gnu/packages/python.scm (python-xopen): Update to 0.3.2.
2018-03-02gnu: Add r-hpar.Ricardo Wurmus
* gnu/packages/bioconductor.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2018-03-02gnu: Add r-powerplus.Ricardo Wurmus
* gnu/packages/cran.scm (r-powerplus): New variable.
2018-03-02gnu: Add r-np.Ricardo Wurmus
* gnu/packages/cran.scm (r-np): New variable.
2018-03-02gnu: Add r-phontools.Ricardo Wurmus
* gnu/packages/cran.scm (r-phontools): New variable.
2018-03-02gnu: Add r-complexplus.Ricardo Wurmus
* gnu/packages/cran.scm (r-complexplus): New variable.
2018-03-02gnu: Add r-expm.Ricardo Wurmus
* gnu/packages/cran.scm (r-expm): New variable.
2018-03-02gnu: Add r-trend.Ricardo Wurmus
* gnu/packages/cran.scm (r-trend): New variable.
2018-03-02gnu: Add r-cubature.Ricardo Wurmus
* gnu/packages/cran.scm (r-cubature): New variable.
2018-03-02gnu: Add r-urca.Ricardo Wurmus
* gnu/packages/cran.scm (r-urca): New variable.
2018-03-02gnu: Add r-fractal.Ricardo Wurmus
* gnu/packages/cran.scm (r-fractal): New variable.
2018-03-02gnu: Add r-extradistr.Ricardo Wurmus
* gnu/packages/cran.scm (r-extradistr): New variable.
2018-03-02gnu: Add r-tsa.Ricardo Wurmus
* gnu/packages/cran.scm (r-tsa): New variable.
2018-03-02gnu: Add r-wmtsa.Ricardo Wurmus
* gnu/packages/cran.scm (r-wmtsa): New variable.
2018-03-02gnu: Add r-tseries.Ricardo Wurmus
* gnu/packages/cran.scm (r-tseries): New variable.
2018-03-02gnu: Add r-quantmod.Ricardo Wurmus
* gnu/packages/cran.scm (r-quantmod): New variable.
2018-03-02gnu: Add r-sapa.Ricardo Wurmus
* gnu/packages/cran.scm (r-sapa): New variable.
2018-03-02gnu: Add r-ifultools.Ricardo Wurmus
* gnu/packages/cran.scm (r-ifultools): New variable.
2018-03-02gnu: Add r-splus2r.Ricardo Wurmus
* gnu/packages/cran.scm (r-splus2r): New variable.
2018-03-02gnu: Add r-leaps.Ricardo Wurmus
* gnu/packages/cran.scm (r-leaps): New variable.
2018-03-02gnu: Add r-ttr.Ricardo Wurmus
* gnu/packages/cran.scm (r-ttr): New variable.
2018-03-02gnu: Add r-rbiofabric.Ricardo Wurmus
* gnu/packages/graph.scm (r-rbiofabric): New variable.
2018-03-02gnu: Add r-sna.Ricardo Wurmus
* gnu/packages/cran.scm (r-sna): New variable.
2018-03-02gnu: Add r-statnet-common.Ricardo Wurmus
* gnu/packages/cran.scm (r-statnet-common): New variable.
2018-03-02gnu: Add r-network.Ricardo Wurmus
* gnu/packages/cran.scm (r-network): New variable.
2018-03-02gnu: nghttp2: Update to 1.31.0.Tobias Geerinckx-Rice
* gnu/packages/web.scm (nghttp2): Update to 1.31.0.
2018-03-02gnu: libpsl: Update to 0.20.1.Tobias Geerinckx-Rice
* gnu/packages/web.scm (libpsl): Update to 0.20.1.
2018-03-02gnu: zerofree: Update to 1.1.1.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (zerofree): Update to 1.1.1.
2018-03-02gnu: python-webencodings: Fix typo in description.Tobias Geerinckx-Rice
* gnu/packages/python-web.scm (python-webencodings)[description]: Fix typo.
2018-03-02gnu: delta: Remove redundant code.Tobias Geerinckx-Rice
* gnu/packages/debug.scm (delta)[arguments]: Remove unneeded MKDIR-P calls.
2018-03-02gnu: perl-mozilla-ca: Update to 20180117.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-mozilla-ca): Update to 20180117.
2018-03-02gnu: perl-test-harness: Update to 3.41.Tobias Geerinckx-Rice
* gnu/packages/perl-check.scm (perl-test-harness): Update to 3.41.
2018-03-02gnu: highlight: Don't hard-code Lua version.Tobias Geerinckx-Rice
* gnu/packages/pretty-print.scm (highlight)[arguments]: Construct the Lua prefix programatically instead of hard-coding it.
2018-03-02gnu: highlight: Update to 3.42.Tobias Geerinckx-Rice
* gnu/packages/pretty-print.scm (highlight): Update to 3.42.
2018-03-02gnu: ghc-abstract-deque: Fix typos in description.Tobias Geerinckx-Rice
* gnu/packages/haskell.scm (ghc-abstract-deque)[description]: Fix typos.
2018-03-02gnu: qscintilla: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/qt.scm (qscintilla)[home-page]: Use HTTPS.
2018-03-02gnu: fortify-headers: Update to 0.9.Tobias Geerinckx-Rice
* gnu/packages/suckless.scm (fortify-headers): Update to 0.9.
2018-03-02gnu: fossil: Update phase style.Tobias Geerinckx-Rice
* gnu/packages/version-control.scm (fossil)[arguments]: Substitute INVOKE for SYSTEM* and end phases with #t.
2018-03-02gnu: gnome-mpv: Update to 0.14.Tobias Geerinckx-Rice
* gnu/packages/video.scm (gnome-mpv): Update to 0.14.
2018-03-02gnu: ath9k-htc-firmware: Use INSTALL-FILE.Tobias Geerinckx-Rice
* gnu/packages/firmware.scm (ath9k-htc-firmware)[arguments]: Substitute INSTALL-FILE for COPY-FILE with MKDIR-P.
2018-03-02gnu: ovmf: Update phase style.Tobias Geerinckx-Rice
* gnu/packages/firmware.scm (ovmf): Substitute INVOKE for SYSTEM* and end phases with #t.
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