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2020-06-22gnu: r-hdf5array: Update to 1.16.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.16.1.
2020-06-22gnu: r-rhdf5: Update to 2.32.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.32.1.
2020-06-22gnu: r-biomart: Update to 2.44.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.44.1.
2020-06-22gnu: r-genomeinfodb: Update to 1.24.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.24.2.
2020-06-22gnu: r-gdsfmt: Update to 1.24.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.24.1.
2020-06-22gnu: r-cicero: Update to 1.6.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.6.1. [propagated-inputs]: Add r-stringi.
2020-06-22gnu: r-cytoml: Update to 2.0.5.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.0.5. [propagated-inputs]: Add r-xml2.
2020-06-22gnu: r-wiggleplotr: Update to 1.12.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.12.1.
2020-06-22gnu: r-regioner: Update to 1.20.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.20.1.
2020-06-22gnu: Add r-rlinsolve.Ricardo Wurmus
* gnu/packages/cran.scm (r-rlinsolve): New variable.
2020-06-22gnu: cuirass: Update to 0.0.1-33-61cc56f6.Mathieu Othacehe
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-33-61cc56f6.
2020-06-22gnu: xl2tpd: Fix typo.Mathieu Othacehe
* gnu/packages/vpn.scm (xl2tpd)[arguments]: Turn "-DPPD" into "-DPPPD".
2020-06-22gnu: express: Update to 1.5.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (express): Update to 1.5.3. [source]: Fetch from Github. [arguments]: Add phase "remove-update-check".
2020-06-22gnu: youtube-dl: Update to 2020.06.16.Tobias Geerinckx-Rice
* gnu/packages/video.scm (youtube-dl): Update to 2020.06.16.
2020-06-22gnu: vmpk: Update home page.Tobias Geerinckx-Rice
gnu/packages/music.scm (vmpk)[home-page]: Update TLD and use HTTPS.
2020-06-22gnu: bison-3.6: Don't change the name of the package.Jakub Kądziołka
This is a follow-up to commit 512d23c65d82bb874ca1fb3c12095b1cec8bbfca. * gnu/packages/bison (bison-3.6)[name]: Remove the overridden value.
2020-06-21gnu: linux-libre@4.14: Update to 4.14.185.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.185. (linux-libre-4.14-pristine-source): Update hash.
2020-06-21gnu: linux-libre@4.9: Update to 4.9.228.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.228. (linux-libre-4.9-pristine-source): Update hash.
2020-06-21gnu: linux-libre@4.4: Update to 4.4.228.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.228. (linux-libre-4.4-pristine-source): Update hash.
2020-06-21gnu: Add r-boruta.Peter Lo
* gnu/packages/statistics.scm (r-boruta): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2020-06-22gnu: xmoto: Update to 0.6.1.Nicolas Goaziou
* gnu/packages/games.scm (xmoto): Update to 0.6.1. [arguments]: Remove phase installing man pages, now properly handled by the installation script.
2020-06-21gnu: emacs-relint: Update to 1.18.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.18.
2020-06-21gnu: guile: Add 3.0.3.Ludovic Courtès
* gnu/packages/guile.scm (guile-3.0.3): New variable.
2020-06-21gnu: Add seahorse-adventures.Nicolas Goaziou
* gnu/packages/games.scm (seahorse-adventures): New variable.
2020-06-21gnu: Add font-mplus-testflight.Julien Lepiller
* gnu/packages/fonts.scm (font-mplus-testflight): New variable.
2020-06-21gnu: k3b: Update to 20.04.2.Timotej Lazar
* gnu/packages/kde-multimedia.scm (k3b): Update to 20.04.2. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-21gnu: k3b: Note the runtime dependency on udisks-service.Timotej Lazar
* gnu/packages/kde-multimedia.scm (k3b)[description]: Note that udisks-service should be enabled. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-21gnu: k3b: Add inputs for libraries loaded at runtime.Timotej Lazar
Patch the source to load these from absolute paths. Actual loading is done by the Qt library, so we cannot use k3b’s runpath. * gnu/packages/kde-multimedia.scm (k3b)[inputs]: Add libcdio-paranoia and libdvdcss. [arguments]<#:phases>[set-absolute-library-paths]: New phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-21gnu: k3b: Add inputs for external programs.Timotej Lazar
* gnu/packages/kde-multimedia.scm (k3b)[inputs]: Add cdrdao, dvd+rw-tools, libburn and sox. [arguments]<#:phases>[wrap-path]: New phase to wrap the binary with paths to the above. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-21gnu: Add cdrdao.Timotej Lazar
* gnu/packages/cdrom.scm (cdrdao): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-21gnu: add convmv.Leo Prikler
* gnu/packages/convmv.scm: New file. * gnu/local.mk: Add it to build. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2020-06-21gnu: Add font-fontna-yasashisa-antique.Julien Lepiller
gnu/packages/fonts.scm (font-fontna-yasashisa-antique): New variable.
2020-06-21services: childhurd: Support more than one instance.Jan (janneke) Nieuwenhuizen
* gnu/services/virtualization.scm (<hurd-vm-configuration>)[options]: Remove "--hda" option. [id,net-options]: New fields. (hurd-vm-net-options): New procedure. Parameterize port forwarding with ID. * gnu/services/virtualization.scm (hurd-vm-shepherd-service): Use them. Parameterize provision with ID, if set. Hardcode "--hda" option for image. * doc/guix.texi (Virtualization Services): Document new fields. Update for hardcoding of "--hda".
2020-06-21gnu: Add poke.B. Wilson
* gnu/packages/engineering.scm (poke): New variable. * gnu/packages/bison.scm (bison-3.6): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-06-21gnu: git-annex: Update to 8.20200617.Kyle Meyer
* gnu/packages/haskell-apps.scm (git-annex): Update to 8.20200617. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-06-21gnu: emacs-hy-mode: Update to 1.0.4.Vinicius Monego
* gnu/packages/emacs-xyz.scm (emacs-hy-mode): Update to 1.0.4. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-06-21system: Add 'sg' and 'newgrp' to %SETUID-PROGRAMS.Brice Waegeneire
* gnu/system.scm (%setuid-programs): Add 'sg' and 'newgrp'. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-06-21gnu: xmoto: Unbundle ODE and libccd.Nicolas Goaziou
* gnu/packages/games.scm (xmoto): Unbundle ODE and libccd. [inputs]: Add ode.
2020-06-21gnu: xmoto: Update to 0.6.0-0-f7ca787.Nicolas Goaziou
* gnu/packages/games.scm (xmoto): Update to 0.6.0-0-f7ca787. [source]: Remove patches. [arguments]: Remove make-flags keyword. * gnu/packages/patches/xmoto-remove-glext.patch: * gnu/packages/patches/xmoto-reproducible.patch: * gnu/packages/patches/xmoto-utf8.patch: Delete files. * gnu/local.mk: Register previous deletions.
2020-06-21gnu: emacs-hyperbole: Use inputs instead of propagated inputs.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-hyperbole)[arguments]: Replace domainname with dnsdomainname, not hostname. [propagated-inputs]: move to... [inputs]: ...this.
2020-06-21gnu: emacs-magit: Update to 0746bf1b.Pierre Langlois
* gnu/packages/emacs-xyz.scm (emacs-magit): Update to 0746bf1b. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-06-20gnu: emacs-hyperbole: Update to 7.0.6.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-hyperbole): Update to 7.0.6. [source]: Use GNU ELPA URL. Remove some patches. [arguments]: Add phase. * gnu/packages/patches/emacs-hyperbole-do-not-check-dir.patch: Delete file. * gnu/packages/patches/emacs-hyperbole-domainname.patch: Delete file. * gnu/local.mk: Register sole patch.
2020-06-20gnu: gnutls: Pass #:tests? unconditionally.Ludovic Courtès
* gnu/packages/tls.scm (gnutls)[arguments]: Add #:tests? unconditionally.
2020-06-20gnu: gnutls: Leave #:disallowed-references empty for GNU/Hurd.Ludovic Courtès
Partly fixes <https://bugs.gnu.org/41775>. This is a followup to a9bcc6474667d6699500f03d69f9c8212a50d711. * gnu/packages/tls.scm (gnutls)[arguments]: Let #:disallowed-references empty when 'hurd-target?' returns true.
2020-06-20gnu: Mutt: Update to 1.14.4.Leo Famulari
* gnu/packages/mail.scm (mutt): Update to 1.14.4.
2020-06-20gnu: Add emacs-hyperbole.LaFreniere, Joseph
* gnu/packages/emacs-xyz.scm (emacs-hyperbole): Add at 7.0.3 Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
2020-06-20gnu: Add hashcash.Jakub Kądziołka
* gnu/packages/networking.scm (hashcash): New variable.
2020-06-20gnu: hydrogen: Update to 1.0.0-rc1.Nicolas Goaziou
* gnu/packages/music.scm (hydrogen): Update to 1.0.0-rc1.
2020-06-20gnu: guile-config: Update to 0.4.2.Alex Sassmannshausen
* gnu/packages/guile-xyz.scm (guile-config): Update to 0.4.2.
2020-06-19gnu: diffoscope: Update to 148.Vagrant Cascadian
* gnu/packages/diffoscope (diffoscope): Update to 148. [arguments] Remove add-known-tools phase, fixed upstream.
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