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2016-08-08gnu: Add mono.Jan Nieuwenhuizen
* gnu/packages/mono.scm: New file. * gnu/packages/local.mk (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-08-08gnu: Add roary.Ben Woodcroft
* gnu/packages/bioinformatics.scm (roary): New variable.
2016-08-08gnu: Add raxml.Ben Woodcroft
* gnu/packages/bioinformatics.scm (raxml): New variable.
2016-08-08gnu: Add prank.Ben Woodcroft
* gnu/packages/bioinformatics.scm (prank): New variable.
2016-08-08gnu: Add exonerate.Ben Woodcroft
* gnu/packages/bioinformatics.scm (exonerate): New variable.
2016-08-08gnu: Add bppsuite.Ben Woodcroft
* gnu/packages/bioinformatics.scm (bppsuite): New variable.
2016-08-08gnu: Add bpp-popgen.Ben Woodcroft
* gnu/packages/bioinformatics.scm (bpp-popgen): New variable.
2016-08-08gnu: Add bpp-phyl.Ben Woodcroft
* gnu/packages/bioinformatics.scm (bpp-phyl): New variable.
2016-08-08gnu: Add bpp-seq.Ben Woodcroft
* gnu/packages/bioinformatics.scm (bpp-seq): New variable.
2016-08-08gnu: Add bpp-core.Ben Woodcroft
* gnu/packages/bioinformatics.scm (bpp-core): New variable.
2016-08-08gnu: Add mcl.Ben Woodcroft
* gnu/packages/machine-learning.scm (mcl): New variable.
2016-08-08gnu: Add perl-env-path.Ben Woodcroft
* gnu/packages/perl.scm (perl-env-path): New variable.
2016-08-08gnu: Add perl-test-files.Ben Woodcroft
* gnu/packages/perl.scm (perl-test-files): New variable.
2016-08-08gnu: Add perl-array-utils.Ben Woodcroft
* gnu/packages/perl.scm (perl-array-utils): New variable.
2016-08-08gnu: Add perl-file-grep.Ben Woodcroft
* gnu/packages/perl.scm (perl-file-grep): New variable.
2016-08-08gnu: Add perl-file-path.Ben Woodcroft
* gnu/packages/perl.scm (perl-file-path): New variable.
2016-08-08gnu: Add perl-file-slurper.Ben Woodcroft
* gnu/packages/perl.scm (perl-file-slurper): New variable.
2016-08-08gnu: Add perl-graph-readwrite.Ben Woodcroft
* gnu/packages/xml.scm (perl-graph-readwrite): New variable.
2016-08-08gnu: Add perl-graph.Ben Woodcroft
* gnu/packages/perl.scm (perl-graph): New variable.
2016-08-08gnu: Add perl-parse-yapp.Ben Woodcroft
* gnu/packages/perl.scm (perl-parse-yapp): New variable.
2016-08-08gnu: Add perl-xml-writer.Ben Woodcroft
* gnu/packages/perl.scm (perl-xml-writer): New variable.
2016-08-08gnu: parallel: Use full paths for executables.Ben Woodcroft
* gnu/packages/parallel.scm (parallel)[inputs]: Add procps. [arguments]: New field.
2016-08-07gnu: offlineimap: Update to 7.0.4.Efraim Flashner
* gnu/packages/mail.scm (offlineimap): Update to 7.0.4.
2016-08-07gnu: Add ii.ng0
* gnu/packages/irc.scm (ii): New variable. Signed-off-by: Alex Kost <alezost@gmail.com>
2016-08-07gnu: zathura-pdf-poppler: Update to 0.2.6.ng0
* gnu/packages/pdf.scm (zathura-pdf-poppler): Update to 0.2.6. Signed-off-by: Alex Kost <alezost@gmail.com>
2016-08-07gnu: zathura-djvu: Update to 0.2.5.ng0
* gnu/packages/pdf.scm (zathura-djvu): Update to 0.2.5. Signed-off-by: Alex Kost <alezost@gmail.com>
2016-08-07gnu: zathura-ps: Update to 0.2.3.ng0
* gnu/packages/pdf.scm (zathura-ps): Update to 0.2.3. Signed-off-by: Alex Kost <alezost@gmail.com>
2016-08-07gnu: zathura-cb: Update to 0.1.5.ng0
* gnu/packages/pdf.scm (zathura-cb): Update to 0.1.5. Signed-off-by: Alex Kost <alezost@gmail.com>
2016-08-07gnu: zathura: Update to 0.3.6.ng0
* gnu/packages/pdf.scm (zathura): Update to 0.3.6. Signed-off-by: Alex Kost <alezost@gmail.com>
2016-08-07gnu: girara: Update to 0.2.6.ng0
* gnu/packages/gtk.scm (girara): Update to 0.2.6. Signed-off-by: Alex Kost <alezost@gmail.com>
2016-08-06gnu: Add python-pythondialog.Leo Famulari
* gnu/packages/python.scm (python-pythondialog): New variable. (python2-pythondialog): Inherit from PYTHON-PYTHONDIALOG. Co-authored-by: Vincent Legoll <vincent.legoll@idgrilles.fr>
2016-08-06gnu: Add bs1770gain.Alex Griffin
* gnu/packages/video.scm (bs1770gain): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-08-06gnu: ruby-cucumber-core: Update to 1.5.0.Ben Woodcroft
* gnu/packages/ruby.scm (ruby-cucumber-core): Update to 1.5.0.
2016-08-06gnu: Add python-biom-format.Ben Woodcroft
* gnu/packages/bioinformatics.scm (python-biom-format, python2-biom-format): New variables.
2016-08-06gnu: Add python-future.Ben Woodcroft
* gnu/packages/python.scm (python-future, python2-future): New variables.
2016-08-05gnu: icedtea-8: Update to 3.1.0.Leo Famulari
Fixes CVE-2016-{3458,3485,3500,3508,3550,3587,3606,3598,3610}. * gnu/packages/java.scm (icedtea-8): Update to 3.1.0. [native-inputs]: Add SHENANDOAH-DROP.
2016-08-05gnu: icedtea-7: Update to 2.6.7.Leo Famulari
Fixes CVE-2016-{3458,3485,3500,3508,3550,3598,3606,3610}. * gnu/packages/java.scm (icedtea-7): Update to 2.6.7.
2016-08-05services: Add spice vdagent service.David Craven
* gnu/services/spice.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * doc/guix.texi (Various Services): New subheading.
2016-08-05gnu: spice-vdagent: Set Exec path in spice-vdagent.desktop.David Craven
* gnu/packages/spice.scm (spice-vdagent): Set Exec path in spice-vdagent.desktop.
2016-08-05gnu: qemu: Enable spice support.David Craven
* gnu/packages/qemu.scm (qemu)[inputs]: Add SPICE and VIRGLRENDERER. (qemu-minimal)[inputs]: Remove SPICE and VIRGLRENDERER.
2016-08-05gnu: qemu: Reorder inputs alphabetically.David Craven
* gnu/packages/qemu.scm (qemu): Reorder inputs alphabetically.
2016-08-05gnu: tor: Update to 0.2.8.6.ng0
* gnu/packages/tor.scm (tor): Update to 0.2.8.6. Signed-off-by: Andreas Enge <andreas@enge.fr>
2016-08-05gnu: qjson: Remove package.Andreas Enge
* gnu/packages/qt.scm (qjson): Delete variable.
2016-08-05gnu: Add ircii.ng0
* gnu/packages/irc.scm (ircii): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-08-05gnu: Add guile-commonmarkErik Edrosa
* gnu/packages/guile.scm (guile-commonmark): New variable.
2016-08-04gnu: tuxguitar: Update to 1.3.2.Ricardo Wurmus
* gnu/packages/music.scm (tuxguitar): Update to 1.3.2. [arguments]: Use ant-build-system and rearrange build phases. [native-inputs]: Remove field.
2016-08-04ui: Remove dependency on (gnu system file-systems).Ludovic Courtès
* guix/ui.scm (specification->file-system-mapping): Move to... * gnu/system/file-systems.scm (specification->file-system-mapping): ... here.
2016-08-04gnu: gcc: Reintroduce dependency on Texinfo.Ludovic Courtès
This partly reverts 868c13c53a9788f8f27e77d8c8f99df14be512ba, which introduced a regression whereby gcc@5 and gcc@6 would no longer contain their Info manual. * gnu/packages/gcc.scm (gcc-5)[native-inputs]: Remove.
2016-08-04gnu: curl: Replace with 7.50.1 [fixes CVE-2016-{3739,4802,5419,5420,5421].Leo Famulari
* gnu/packages/curl.scm (curl)[replacement]: New field. (curl-7.50.1): New variable.
2016-08-04gnu: zsh: Move to shells.scm.Tobias Geerinckx-Rice
* gnu/packages/zsh.scm (zsh): Move from here ... * gnu/packages/shells.scm (zsh): ... to here. * gnu/packages/zsh.scm: Delete file. * gnu/local.mk (GNU_SYSTEM_MODULES): Remove zsh.scm.
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