summaryrefslogtreecommitdiff
path: root/gnu
AgeCommit message (Collapse)Author
2024-04-21gnu: r-lme4: Update to 1.1-35.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-35.3. Change-Id: I20c5839dd74fc596406e129086cf58fb78d06297
2024-04-21gnu: r-diptest: Update to 0.77-1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-diptest): Update to 0.77-1. Change-Id: I4f8c677984f68d3d8a093d5bdd497352e4c8d4c4
2024-04-21gnu: r-matrixstats: Update to 1.3.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-matrixstats): Update to 1.3.0. Change-Id: I660f58800789f1e7e0a2380f3503597b62c0e5ba
2024-04-21gnu: r-rcpparmadillo: Update to 0.12.8.2.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.12.8.2.1. Change-Id: Ibfc58ce4512ee1c50f9041708ae18b296f3987b1
2024-04-21gnu: r-testthat: Update to 3.2.1.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-testthat): Update to 3.2.1.1. Change-Id: I57dbc93ab3dff959c3cb468e0fc71cf5865c4c65
2024-04-21gnu: r-crul: Update to 1.4.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-crul): Update to 1.4.2. Change-Id: I982b33d77d6a14803ad398c106131558e512f207
2024-04-21gnu: r-paws-common: Update to 0.7.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-paws-common): Update to 0.7.2. Change-Id: I48bc944013c82dcdcdc2a2063b3c4f925c733c03
2024-04-21gnu: r-tensorflow: Update to 2.16.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-tensorflow): Update to 2.16.0. Change-Id: I6f356117eaa78961a8ea6689b08a8dae1778de03
2024-04-21gnu: r-pkgdown: Update to 2.0.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-pkgdown): Update to 2.0.8. Change-Id: Ib96ecbb5a78e8a53ecceae9c7b9e814690009986
2024-04-21gnu: r-mlr3misc: Update to 0.15.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-mlr3misc): Update to 0.15.0. Change-Id: I96f607787c4816c849ad7fa23ebb62855bf4f24e
2024-04-21gnu: r-tidytext: Update to 0.4.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-tidytext): Update to 0.4.2. Change-Id: I3ec30c70dee2b8ab719a1435db5e97354bc93459
2024-04-21gnu: r-butcher: Update to 0.3.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-butcher): Update to 0.3.4. Change-Id: I31145414549fb55b36b97e823797d645a4248dde
2024-04-21gnu: r-dunn-test: Update to 1.3.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-dunn-test): Update to 1.3.6. Change-Id: Ic8efd6dfd893719522f1c8dab05a782807a25c09
2024-04-21gnu: r-tuner: Update to 1.4.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-tuner): Update to 1.4.7. Change-Id: I709c7b844f67977b0fe367ff21196d221884761e
2024-04-21gnu: r-uwot: Update to 0.2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-uwot): Update to 0.2.1. [native-inputs]: Add r-knitr. Change-Id: Ife200a7ee6316f7accdb596e8bdb709b65461ba2
2024-04-21gnu: r-ggfortify: Update to 0.4.17.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggfortify): Update to 0.4.17. Change-Id: If1188165f5050b247ace0507d6c9736714014d94
2024-04-21gnu: r-optparse: Update to 1.7.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-optparse): Update to 1.7.5. Change-Id: I7154363b719df7595e6c213b7dedb0ea9f65401c
2024-04-21gnu: r-bookdown: Update to 0.39.Ricardo Wurmus
* gnu/packages/cran.scm (r-bookdown): Update to 0.39. Change-Id: Ib6dd434091af59fb191498f74ddd7dcd793f3818
2024-04-21gnu: r-ggeffects: Update to 1.5.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggeffects): Update to 1.5.2. Change-Id: Id12cdae314f100eb4f8bea22f88d857c02d08b8e
2024-04-21gnu: r-argparse: Update to 2.2.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-argparse): Update to 2.2.3. Change-Id: Ice5245a0aee41bd3ccccfc4e34fb516965c3eb6b
2024-04-21gnu: r-reticulate: Update to 1.36.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-reticulate): Update to 1.36.0. Change-Id: I0f8478233a848bdb21663ed26c9620014cf8d470
2024-04-21gnu: r-renv: Update to 1.0.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-renv): Update to 1.0.7. Change-Id: I81443202b8f6a207db88e01bfa109c54f1a5a6b2
2024-04-21gnu: r-restrserve: Update to 1.2.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-restrserve): Update to 1.2.2. Change-Id: I49138bd1989b4d3a8e182d99075d8bf58e8bd0fc
2024-04-21gnu: r-prismatic: Update to 1.1.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-prismatic): Update to 1.1.2. Change-Id: I0f9cca92ab049cffe321530ce59f527d1fe948f7
2024-04-21gnu: r-ape: Update to 5.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-ape): Update to 5.8. Change-Id: Ic35ba5e0a96dec16b89004cbfa6b48d2c88951a1
2024-04-21gnu: r-collapse: Update to 2.0.13.Ricardo Wurmus
* gnu/packages/cran.scm (r-collapse): Update to 2.0.13. Change-Id: I78eb83695807325581a3bc213c35a58258df882e
2024-04-21gnu: r-metap: Update to 1.10.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-metap): Update to 1.10. Change-Id: I1890c61b9a20d61a55bf76d61278729b0ae4356a
2024-04-21gnu: blender: Fix url.Zheng Junjie
* gnu/packages/graphics.scm (blender): Add www to url. Change-Id: I0d1e84f59d2ac0d0e9c72a5857afefc05d161eac
2024-04-21gnu: blender: Add wrap-bin phase.David Thompson
* gnu/packages/graphics.scm (blender)[arguments]: Add wrap-bin phase to set proper GUIX_PYTHONPATH. [inputs]: Add bash-minimal per 'guix lint'. Change-Id: I435957baf181ef7f92d4160529439357e16714f6 Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
2024-04-21gnu: font-public-sans: Update to 2.001.宋文武
* gnu/packages/fonts.scm (font-public-sans): Update to 2.001. Change-Id: I404ec907827b4ce5b08f5021ef22dc0e8bb55e7a
2024-04-21gnu: font-mononoki: Update to 1.6.宋文武
* gnu/packages/fonts.scm (font-mononoki): Update to 1.6. Change-Id: I39d2690481197afa86ebdf959fd5f904d0b3104f
2024-04-21gnu: font-spleen: Update to 2.1.0.宋文武
* gnu/packages/fonts.scm (font-spleen): Update to 2.1.0. Change-Id: Icd27bdfa3d30dee6bc182bb21780e55f58185e7a
2024-04-20gnu: java-powermock-reflect: Update to 2.0.9.Julien Lepiller
* gnu/packages/java.scm (java-powermock-reflect): Update to 2.0.9. [source]: Use git source. (java-powermock-reflect, java-powermock-core, java-powermock-api-support) (java-powermock-junit4-common, java-powermock-junit4) (java-powermock-api-easymock): Update inputs and use new style. * gnu/packages/patches/java-powermock-fix-java-files.patch: Update patch. Change-Id: I856e5f923b094b9fcfa78f5f1d6ca2e4c2af41a7
2024-04-20gnu: Add java-byte-buddy-dep.Julien Lepiller
* gnu/packages/java.scm (java-byte-buddy-dep): New variable. Change-Id: I7907fffe783d6edec65d8b0c496b6e16db53c24d
2024-04-20gnu: Add java-asm-commons-9.Julien Lepiller
* gnu/packages/java.scm (java-asm-commons-9): New variable. Change-Id: Ie289193efd14957d3cbba437cc1a129665c59bfa
2024-04-20gnu: Add java-asm-util-9.Julien Lepiller
* gnu/packages/java.scm (java-asm-util-9): New variable. Change-Id: I41eaa0c7d74d0aee569e8b6b80ec9fee876a1af1
2024-04-20gnu: Add java-asm-analysis-9.Julien Lepiller
* gnu/packages/java.scm (java-asm-analysis-9): New variable. Change-Id: I11d959b9cf3116a0614689ba24dbfd1b746a3b6f
2024-04-20gnu: maven: Update to 3.9.0.Julien Lepiller
* gnu/packages/maven.scm (maven-pom): Update to 3.9.0. Change-Id: If6f9f0adf3065b450d373e0fcc619b79e4a529dc
2024-04-20gnu: Add java-asm-tree-9.Julien Lepiller
* gnu/packages/java.scm (java-asm-tree-9): New variable. Change-Id: I6fd32ee00de8488ff980bccd079636abe09ea773
2024-04-20gnu: Add java-asm-9.Julien Lepiller
* gnu/packages/java.scm (java-asm-9): New variable. Change-Id: Ib54e81dc4d55909541851abca34fabde631c8c55
2024-04-20gnu: maven-resolver-api: Update to 1.9.4.Julien Lepiller
* gnu/packages/maven.scm (maven-resolver-api): Update to 1.9.4. (maven-resolver-util)[native-inputs]: Update test dependencies. (maven-resolver-named-lock): New variable. (maven-resolver-impl, maven-resolver-transport-wagon) (maven-resolver-transport-http): Update sisu. Change-Id: I080136e77454ee256a74fff263301e250a2918cb
2024-04-20gnu: Add maven-parent-pom-37.Julien Lepiller
* gnu/packages/maven-parent-pom.scm (maven-parent-pom-37): New variable. Change-Id: I572eea2548006929577ba72dfe022ddb22373099
2024-04-20gnu: Add apache-parent-pom-27.Julien Lepiller
* gnu/packages/maven-parent-pom.scm (apache-parent-pom-27): New variable. Change-Id: Ic8ad7747dfa32621532fd7449735bdcd6adefc1e
2024-04-20gnu: Add maven-parent-pom-39.Julien Lepiller
* gnu/packages/maven-parent-pom.scm (maven-parent-pom-39): New variable. Change-Id: I9a2b203a0d0b4d2fb59d02077df2d607f59d953f
2024-04-20gnu: Add apache-parent-pom-29.Julien Lepiller
* gnu/packages/maven-parent-pom.scm (apache-parent-pom-29): New variable. Change-Id: Ia369e90b4e0c861729dabe8c331baab2b1efe7ce
2024-04-20gnu: java-guava: Update to 31.1.Julien Lepiller
* gnu/packages/patches/java-guava-remove-annotation-deps.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/java.scm (java-guava): Update to 31.1. [source]: Use patch. (java-guava-futures-failureaccess): New variable. * gnu/packages/bioinformatics.scm (java-picard, java-picard-2.10.3): Fix for newer guava. * gnu/packages/maven.scm (maven): Add java-guava-futures-failureaccess. Change-Id: Id2553c48e11c6001fb45a0589720cef1551804d9
2024-04-20gnu: java-cglib: Update to 3.3.0.Julien Lepiller
cglib now requires asm-8 at runtime, so propagate it and do not use asm-6 in dependents. * gnu/packages/java.scm (java-cglib): Update to 3.3.0. (java-plexus-component-metadata-1.7, java-easymock, java-jmock) (java-jmock-legacy, java-jmock-junit4, java-ops4j-pax-exam-core-spi) (java-guice, java-fest-assert, java-testng, java-lmax-disruptor) (java-powermock-reflect, java-powermock-modules-junit4) (java-kafka-clients, java-jline-2, java-xmlunit, java-eclipse-sisu-plexus) (java-logback-core): Remove `java-asm` from inputs or native-inputs. (java-httpcomponents-httpclient-cache) (java-httpcomponents-httpclient-osgi): Disable tests. * gnu/packages/batik.scm (java-xmlgraphics-commons): Remove `java-asm` from inputs or native inputs. * gnu/packages/maven.scm (maven-resolver-transport-file) (maven-resolver-transport-http, maven-model, maven-repository-metadata) (maven-compat): Remove `java-asm` from inputs or native-inputs. Change-Id: I92a939e7522d92b185715d7935aabed5ddb77451
2024-04-20gnu: Add java-error-prone-annotations.Julien Lepiller
* gnu/packages/java.scm (java-error-prone-annotations): New variable. Change-Id: I42b79a7c338f8866617b474cb39bc2ea75160d4a
2024-04-20gnu: java-bsh: Update to 2.1.1.Julien Lepiller
* gnu/packages/java.scm (java-bsh): Update to 2.1.1. Change-Id: I70fd1e5ed63195cb8feb9fe14bd7331d34d6da4f
2024-04-20gnu: java-objenesis: Update to 3.3.Julien Lepiller
* gnu/packages/java.scm (java-objenesis): Update to 3.3. Change-Id: I2739d203cace8e7a14396c7a78531b1eb2222251