Age | Commit message (Collapse) | Author |
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* gnu/packages/diffoscope.scm (diffoscope): Update to 244.
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* gnu/packages/dictionaries.scm (sdcv): Update to 0.5.5.
[arguments]: ...don't we? Remove the 'remove-jq-requirement phase.
[native-inputs]: Add jq.
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* gnu/packages/dav.scm (xandikos): Update to 0.2.8.
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* gnu/packages/databases.scm (virtuoso-ose)[arguments]:
Rewrite as G-expressions.
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* gnu/packages/databases.scm (virtuoso-ose): Update to 7.2.10.
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* gnu/packages/dav.scm (vdirsyncer)[arguments]:
Rewrite as G-expressions.
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* gnu/packages/dav.scm (vdirsyncer): Update to 0.19.2.
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* gnu/packages/databases.scm (redis): Update to 7.0.12.
[arguments]: Ever so slightly tweak style.
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* gnu/packages/databases.scm (redis)[source]: Use HTTPS.
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* gnu/packages/curl.scm (trurl)[synopsis]: Fix typo.
[description]: Reorder & tighten.
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* gnu/packages/curl.scm (trurl): Update to 0.8.
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* gnu/packages/bioconductor.scm (r-experimenthub): Update to 2.8.1.
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* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.12.1.
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* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.8.2.
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* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.26.1.
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* gnu/packages/bioconductor.scm (r-icobra): Update to 1.28.1.
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* gnu/packages/bioconductor.scm (r-treeio): Update to 1.24.2.
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* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.76.1.
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* gnu/packages/statistics.scm (r-puniform): Update to 0.2.6.
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* gnu/packages/statistics.scm (r-clubsandwich): Update to 0.5.9.
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* gnu/packages/statistics.scm (r-matrixmodels): Update to 0.5-2.
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* gnu/packages/statistics.scm (r-deoptimr): Update to 1.1-0.
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* gnu/packages/statistics.scm (r-mgcv): Update to 1.9-0.
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* gnu/packages/cran.scm (r-ggh4x): Update to 0.2.5.
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* gnu/packages/cran.scm (r-stars): Update to 0.6-2.
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* gnu/packages/cran.scm (r-seewave): Update to 2.2.1.
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* gnu/packages/cran.scm (r-sccore): Update to 1.0.4.
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* gnu/packages/cran.scm (r-sf): Update to 1.0-14.
[inputs]: Add curl, openssh, openssl, pcre2, and zlib.
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* gnu/packages/cran.scm (r-longdat): Update to 1.1.2.
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* gnu/packages/cran.scm (r-tidytree): Update to 0.4.4.
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* gnu/packages/cran.scm (r-rcppalgos): Update to 2.8.0.
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* gnu/packages/cran.scm (r-doby): Update to 4.6.17.
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* gnu/packages/cran.scm (r-ctrdata): Update to 1.14.0.
[propagated-inputs]: Add r-dplyr.
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* gnu/packages/cran.scm (r-rcppspdlog): Update to 0.0.14.
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* gnu/packages/cran.scm (r-gensa): Update to 1.1.9.
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* gnu/packages/cran.scm (r-sass): Update to 0.4.7.
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* gnu/packages/cran.scm (r-ggpp): Update to 0.5.3.
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* gnu/packages/cran.scm (r-babelwhale): Update to 1.2.0.
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* gnu/packages/statistics.scm (r-openssl): Update to 2.1.0.
[properties]: Add hint to keep openssl input.
[inputs]: Add zlib.
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Give the python variant a different name, and fix the build.
* gnu/packages/simulation.scm (python-open-simulation-interface)[name]: Set.
[propagated-inputs]: Add python-pyyaml and python-protobuf.
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To avoid the ambiguous package specification.
* gnu/packages/gnome.scm (devhelp-with-libsoup2): Hide package.
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To avoid the ambiguous package specification.
* gnu/packages/bioinformatics.scm (python-bcbio-gff/biopython-1.73): Hide
package.
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As this package definition is redundant, harfbuzz is version 5.3.1.
* gnu/packages/gtk.scm (harfbuzz-5): Remove.
* gnu/packages/libreoffice.scm (libreoffice)[inputs]: Replace harfbuzz-5 with
harfbuzz.
* gnu/packages/qt.scm (qtwebengine)[inputs]: Remove redundant replace.
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As one profiling test fails very repeatedly on the bordeaux build farm, but
ghc did seem to build successfully on other machines.
* gnu/packages/haskell.scm (ghc-8.10)[arguments]: Don't run the T11627a
profiling test on i686-linux.
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* gnu/packages/java.scm (jbr17)[arguments]<#:configure-flags>: Use Jetbrains'
configure flags.
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* gnu/packages/radio.scm (welle-io)[inputs]: Add qtquickcontrols-5.
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This is a follow-up to commit 5dc2a88f99e2e448f7e9ca842a4a0d072a8f8f20.
* gnu/packages/node.scm (libnode)[arguments]: Remove phase
'ignore-number-of-hardlinks.
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* gnu/packages/statistics.scm (r-with-tests): Update to 4.3.1.
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detectCores.R fails to return the number of cores when running R in a
container without grep.
Reported-by: Jonas Freimuth.
* gnu/packages/statistics.scm (r-with-tests)[arguments]: Fix references to
grep and wc in detectCores.R.
[inputs]: Add grep.
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* gnu/packages/pdf.scm (capypdf): Update to 0.4.0.
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