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2023-07-16gnu: diffoscope: Update to 244.Tobias Geerinckx-Rice
* gnu/packages/diffoscope.scm (diffoscope): Update to 244.
2023-07-16gnu: sdcv: Update to 0.5.5.Tobias Geerinckx-Rice
* gnu/packages/dictionaries.scm (sdcv): Update to 0.5.5. [arguments]: ...don't we? Remove the 'remove-jq-requirement phase. [native-inputs]: Add jq.
2023-07-16gnu: xandikos: Update to 0.2.8.Tobias Geerinckx-Rice
* gnu/packages/dav.scm (xandikos): Update to 0.2.8.
2023-07-16gnu: virtuoso-ose: Use G-expressions.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (virtuoso-ose)[arguments]: Rewrite as G-expressions.
2023-07-16gnu: virtuoso-ose: Update to 7.2.10.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (virtuoso-ose): Update to 7.2.10.
2023-07-16gnu: vdirsyncer: Use G-expressions.Tobias Geerinckx-Rice
* gnu/packages/dav.scm (vdirsyncer)[arguments]: Rewrite as G-expressions.
2023-07-16gnu: vdirsyncer: Update to 0.19.2.Tobias Geerinckx-Rice
* gnu/packages/dav.scm (vdirsyncer): Update to 0.19.2.
2023-07-16gnu: redis: Update to 7.0.12.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (redis): Update to 7.0.12. [arguments]: Ever so slightly tweak style.
2023-07-16gnu: redis: Fetch over HTTPS.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (redis)[source]: Use HTTPS.
2023-07-16gnu: trurl: Improve description.Tobias Geerinckx-Rice
* gnu/packages/curl.scm (trurl)[synopsis]: Fix typo. [description]: Reorder & tighten.
2023-07-16gnu: trurl: Update to 0.8.Tobias Geerinckx-Rice
* gnu/packages/curl.scm (trurl): Update to 0.8.
2023-07-17gnu: r-experimenthub: Update to 2.8.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 2.8.1.
2023-07-17gnu: r-flowcore: Update to 2.12.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.12.1.
2023-07-17gnu: r-clusterprofiler: Update to 4.8.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.8.2.
2023-07-17gnu: r-gosemsim: Update to 2.26.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.26.1.
2023-07-17gnu: r-icobra: Update to 1.28.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.28.1.
2023-07-17gnu: r-treeio: Update to 1.24.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.24.2.
2023-07-17gnu: r-affycomp: Update to 1.76.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.76.1.
2023-07-17gnu: r-puniform: Update to 0.2.6.Ricardo Wurmus
* gnu/packages/statistics.scm (r-puniform): Update to 0.2.6.
2023-07-17gnu: r-clubsandwich: Update to 0.5.9.Ricardo Wurmus
* gnu/packages/statistics.scm (r-clubsandwich): Update to 0.5.9.
2023-07-17gnu: r-matrixmodels: Update to 0.5-2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-matrixmodels): Update to 0.5-2.
2023-07-17gnu: r-deoptimr: Update to 1.1-0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-deoptimr): Update to 1.1-0.
2023-07-17gnu: r-mgcv: Update to 1.9-0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-mgcv): Update to 1.9-0.
2023-07-17gnu: r-ggh4x: Update to 0.2.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggh4x): Update to 0.2.5.
2023-07-17gnu: r-stars: Update to 0.6-2.Ricardo Wurmus
* gnu/packages/cran.scm (r-stars): Update to 0.6-2.
2023-07-17gnu: r-seewave: Update to 2.2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-seewave): Update to 2.2.1.
2023-07-17gnu: r-sccore: Update to 1.0.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-sccore): Update to 1.0.4.
2023-07-17gnu: r-sf: Update to 1.0-14.Ricardo Wurmus
* gnu/packages/cran.scm (r-sf): Update to 1.0-14. [inputs]: Add curl, openssh, openssl, pcre2, and zlib.
2023-07-17gnu: r-longdat: Update to 1.1.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-longdat): Update to 1.1.2.
2023-07-17gnu: r-tidytree: Update to 0.4.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-tidytree): Update to 0.4.4.
2023-07-17gnu: r-rcppalgos: Update to 2.8.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-rcppalgos): Update to 2.8.0.
2023-07-17gnu: r-doby: Update to 4.6.17.Ricardo Wurmus
* gnu/packages/cran.scm (r-doby): Update to 4.6.17.
2023-07-17gnu: r-ctrdata: Update to 1.14.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-ctrdata): Update to 1.14.0. [propagated-inputs]: Add r-dplyr.
2023-07-17gnu: r-rcppspdlog: Update to 0.0.14.Ricardo Wurmus
* gnu/packages/cran.scm (r-rcppspdlog): Update to 0.0.14.
2023-07-17gnu: r-gensa: Update to 1.1.9.Ricardo Wurmus
* gnu/packages/cran.scm (r-gensa): Update to 1.1.9.
2023-07-17gnu: r-sass: Update to 0.4.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-sass): Update to 0.4.7.
2023-07-17gnu: r-ggpp: Update to 0.5.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggpp): Update to 0.5.3.
2023-07-17gnu: r-babelwhale: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-babelwhale): Update to 1.2.0.
2023-07-17gnu: r-openssl: Update to 2.1.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-openssl): Update to 2.1.0. [properties]: Add hint to keep openssl input. [inputs]: Add zlib.
2023-07-17gnu: simulation: Fix duplicate open-simulation-interface.Christopher Baines
Give the python variant a different name, and fix the build. * gnu/packages/simulation.scm (python-open-simulation-interface)[name]: Set. [propagated-inputs]: Add python-pyyaml and python-protobuf.
2023-07-17gnu: gnome: Hide devhelp-with-libsoup2.Christopher Baines
To avoid the ambiguous package specification. * gnu/packages/gnome.scm (devhelp-with-libsoup2): Hide package.
2023-07-17gnu: Hide python-bcbio-gff/biopython-1.73.Christopher Baines
To avoid the ambiguous package specification. * gnu/packages/bioinformatics.scm (python-bcbio-gff/biopython-1.73): Hide package.
2023-07-17gnu: Remove harfbuzz-5.Christopher Baines
As this package definition is redundant, harfbuzz is version 5.3.1. * gnu/packages/gtk.scm (harfbuzz-5): Remove. * gnu/packages/libreoffice.scm (libreoffice)[inputs]: Replace harfbuzz-5 with harfbuzz. * gnu/packages/qt.scm (qtwebengine)[inputs]: Remove redundant replace.
2023-07-17gnu: ghc-8.10: Fix build on i686-linux.Christopher Baines
As one profiling test fails very repeatedly on the bordeaux build farm, but ghc did seem to build successfully on other machines. * gnu/packages/haskell.scm (ghc-8.10)[arguments]: Don't run the T11627a profiling test on i686-linux.
2023-07-17gnu: jbr: Use Jetbrains' configure-flags.Danny Milosavljevic
* gnu/packages/java.scm (jbr17)[arguments]<#:configure-flags>: Use Jetbrains' configure flags.
2023-07-16gnu: welle-io: Add missing input.Guillaume Le Vaillant
* gnu/packages/radio.scm (welle-io)[inputs]: Add qtquickcontrols-5.
2023-07-16gnu: libnode: Delete extra phase.Ricardo Wurmus
This is a follow-up to commit 5dc2a88f99e2e448f7e9ca842a4a0d072a8f8f20. * gnu/packages/node.scm (libnode)[arguments]: Remove phase 'ignore-number-of-hardlinks.
2023-07-16gnu: r-with-tests: Update to 4.3.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-with-tests): Update to 4.3.1.
2023-07-16gnu: r-with-tests: Fix reference to grep.Ricardo Wurmus
detectCores.R fails to return the number of cores when running R in a container without grep. Reported-by: Jonas Freimuth. * gnu/packages/statistics.scm (r-with-tests)[arguments]: Fix references to grep and wc in detectCores.R. [inputs]: Add grep.
2023-07-16gnu: capypdf: Update to 0.4.0.Liliana Marie Prikler
* gnu/packages/pdf.scm (capypdf): Update to 0.4.0.
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