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2022-08-02gnu: parallel: Update to 20220722.Efraim Flashner
* gnu/packages/parallel.scm (parallel): Update to 20220722.
2022-08-02gnu: Add r-rcppalgos.Ricardo Wurmus
* gnu/packages/cran.scm (r-rcppalgos): New variable.
2022-08-02gnu: Add r-phylotools.Ricardo Wurmus
* gnu/packages/cran.scm (r-phylotools): New variable.
2022-08-02gnu: Add python-scanorama.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-scanorama): New variable.
2022-08-02gnu: python-intervaltree: Update to 3.1.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-intervaltree): Update to 3.1.0.
2022-08-02gnu: Add python-geosketch.Ricardo Wurmus
* gnu/packages/python-science.scm (python-geosketch): New variable.
2022-08-02gnu: Add python-fbpca.Ricardo Wurmus
* gnu/packages/python-science.scm (python-fbpca): New variable.
2022-08-02gnu: monero-gui: Update to 0.18.0.0.Guillaume Le Vaillant
* gnu/packages/finance.scm (monero-gui): Update to 0.18.0.0. [inputs]: remove labels. [arguments]: Use gexps.
2022-08-02gnu: monero: Update to 0.18.0.0.Guillaume Le Vaillant
* gnu/packages/finance.scm (monero): Update to 0.18.0.0. [source]: Update snippet. [arguments]: Use gexps.
2022-08-02gnu: scummvm: Update to 2.6.0.Nicolas Goaziou
* gnu/packages/emulators.scm (scummvm): Update to 2.6.0.
2022-08-02gnu: emacs-clojure-mode: Update to 5.15.1.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-clojure-mode): Update to 5.15.1.
2022-08-02home: Add explicit dependency on env to activation script.Andrew Tropin
* gnu/home/services.scm (compute-activation-script): Add explicit dependency on env to activation script. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2022-08-02gnu: strawberry: Update to 1.0.7.Michael Rohleder
* gnu/packages/music.scm (strawberry): Update to 1.0.7. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2022-08-02gnu: kicad: Update to 6.0.7.Peter Polidoro
* gnu/packages/engineering.scm (kicad): Update to 6.0.7. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2022-08-01gnu: Add r-infercnv.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-infercnv): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-08-01gnu: Add r-phyclust.Mădălin Ionel Patrașcu
* gnu/packages/cran.scm (r-phyclust): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-08-02gnu: node-lts: Build with icu4c-71.Efraim Flashner
* gnu/packages/node.scm (node-lts)[inputs]: Replace icu4c-70 with icu4c-71. [native-inputs]: Same.
2022-08-01gnu: Add qtlottie.Maxim Cournoyer
* gnu/packages/qt.scm (qtlottie): New variable.
2022-08-01gnu: telephony: Add a Jami test for a partially defined jami-account.Maxim Cournoyer
* gnu/tests/telephony.scm (%dummy-jami-account-partial): New variable. (make-jami-os): Add a PARTIAL? argument and use it to select the jami-account variant to use. (%jami-os-provisioning-partial): New variable. (run-jami-test): Add a PARTIAL? argument, and use it to select operating system variant. Skip allowed-contacts and moderators test when PARTIAL? is true. (%test-jami-provisioning-partial): New test.
2022-08-01services: configuration: Step back from *unspecified*.Maxim Cournoyer
Fixes <https://issues.guix.gnu.org/56799>. This partially reverts 8cb1a49a3998c39f315a4199b7d4a121a6d66449. Rationale: *unspecified* cannot be serialized thus used as a G-Expression input, which is problematic/inconvenient when using deeply nested records. As an example, jami-service-type was broken when using partially defined <jami-account> records. * gnu/services/configuration.scm (define-maybe-helper): Check against the 'unset symbol. (normalize-field-type+def): Adjust value to 'unset. (define-configuration-helper): Use 'unset as the default value thunk. * gnu/services/file-sharing.scm (serialize-maybe-string): Check against the 'unset symbol. (serialize-maybe-file-object): Likewise. * gnu/services/messaging.scm (define-all-configurations): Use 'unset as value. (raw-content?): Check against 'unset symbol. (prosody-configuration)[http-max-content-size]: Default to 'unset. [http-external-url]: Likewise. [mod-muc]: Likewise. [raw-content]: Likewise. * gnu/services/networking.scm (opendht-configuration): Adjust documentation. * gnu/services/telephony.scm (jami-shepherd-services): Replace *undefined* with the 'unset symbol. * tests/services/configuration.scm ("maybe type, no default"): Check against the 'unset symbol. * doc/guix.texi: Regenerate the opendht-configuration, openvpn-client-configuration and openvpn-server-configuration documentation.
2022-08-01gnu: python-bbknn: Update to 1.5.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-bbknn): Update to 1.5.1. [propagated-inputs]: Add python-pandas.
2022-08-01gnu: Add fail2ban.muradm
* gnu/packages/admin.scm (fail2ban): New variable. * gnu/packages/patches/fail2ban-0.11.2_CVE-2021-32749.patch, gnu/packages/patches/fail2ban-0.11.2_fix-setuptools-drop-2to3.patch, gnu/packages/patches/fail2ban-0.11.2_fix-test-suite.patch, gnu/packages/patches/fail2ban-paths-guix-conf.patch, gnu/packages/patches/fail2ban-python310-server-action.patch, gnu/packages/patches/fail2ban-python310-server-actions.patch, gnu/packages/patches/fail2ban-python310-server-jails.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-08-01gnu: trilinos-for-dealii-openmpi: Use G-expressions.Paul A. Patience
* gnu/packages/maths.scm (trilinos-for-dealii-openmpi)[arguments]: Use G-expressions. <#:phases>: Remove trailing boolean. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-08-01gnu: trilinos-for-dealii-openmpi: Remove input labels.Paul A. Patience
* gnu/packages/maths.scm (trilinos-for-dealii-openmpi)[native-inputs, inputs, propagated-inputs]: Remove labels. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-08-01gnu: dealii: Update to 9.4.0.Paul A. Patience
* gnu/packages/maths.scm (dealii): Update to 9.4.0. [propagated-inputs]: Replace sundials-5 with sundials. (dealii-openmpi)[propagated-inputs]: Replace sundials-openmpi-5 with sundials-openmpi. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-08-01gnu: dealii: Use G-expressions.Paul A. Patience
* gnu/packages/maths.scm (dealii)[snippet, arguments]: Use G-expressions. (dealii-openmpi)[arguments]: Same. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-08-01gnu: trilinos-for-dealii-openmpi: Fix build.Paul A. Patience
* gnu/packages/maths.scm (trilinos-for-dealii-openmpi)[native-inputs]: Add gcc-7 to fix the failing build with newer versions of gcc. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-08-01gnu: Add r-muscat.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-muscat): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-08-01gnu: mu: Update to 1.8.7.muradm
* gnu/packages/mail.scm (mu): Update to 1.8.7. [source]: Fetch from git. [build-system]: Use meson-build-system. [native-inputs]: Remove glib:bin and tzdata; add gnupg and texinfo; use new style. [inputs]: Remove guile. [arguments]: Remove obsolete 'patch-configure, 'fix-ffi, and 'check-tz-setup phases. Rename 'patch-bin-sh-in-tests to 'patch-bin-references and update it. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-08-01gnu: qutebrowser: Fix indentation.Maxim Cournoyer
* gnu/packages/web-browsers.scm (qutebrowser): Fix indentation.
2022-08-01gnu: qutebrowser: Fix build.Maxim Cournoyer
Fixes <https://issues.guix.gnu.org/56864>, which is a regression introduced with a0beb297a352930b89051ff258a06d78f224d6b9. * gnu/packages/web-browsers.scm (qutebrowser) [phases]{wrap-qt-process-path}: Do not use the (no longer valid) "qtwebengine-5" label; instead, locate QtWebEngineProcess via 'search-input-file'. Reported-by: Jack Hill <jackhill@jackhill.us>
2022-08-01gnu: Add r-millefy.Mădălin Ionel Patrașcu
* gnu/packages/bioinformatics.scm (r-millefy): New variable.
2022-08-01gnu: exiv2: Fix test failure on ppc64le and aarch64.Marcel van der Boom
ppc64 and aarch64 do not raise exception and thus output and exit code for test is different. See: https://github.com/Exiv2/exiv2/issues/365 and https://github.com/Exiv2/exiv2/issues/933 * gnu/packages/image.scm (exiv2)[arguments]: Add 'adjust-tests' phase. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-08-01gnu: Add python-biblib.Philip McGrath
* gnu/packages/python-xyz.scm (python-biblib): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-08-01services: opensmtpd: Make commands setgid to "smtpq" by default.Maya
This is a patch that fixes "<executable name>: this program must be setgid smtpq". * gnu/services/mail.scm (<opensmtpd-configuration>)[setgid-commands?]: New field. (opensmtpd-set-gids): New procedure. (opensmtpd-service-type)[extensions]: Add SETUID-PROGRAM-SERVICE-TYPE extension. * doc/guix.texi (Mail Services): Document it. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-08-01gnu: tractor: Update to 3.14.Danial Behzadi
* gnu/packages/tor.scm (tractor): Update to 3.14. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-08-01gnu: Add comma after “i.e.” in descriptions.Paul A. Patience
* gnu/packages/bioconductor.scm (r-anota)[description]: Add comma after “i.e.”. * gnu/packages/code.scm (xenon)[description]: Same. * gnu/packages/cran.scm (r-crosstalk)[description]: Same. * gnu/packages/python-xyz.scm (python-radon)[description]: Same. * gnu/packages/statistics.scm (r-logspline)[description]: Same. * gnu/packages/suckless.scm (tabbed)[description]: Same. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-08-01gnu: hdf5-1.8: Add missing comma to linker flag.Paul A. Patience
* gnu/packages/maths.scm (hdf5-1.8)[arguments]<#:phases>: Add missing comma to linker flag. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-08-01gnu: guile-lens: Fix build.Z572
* gnu/packages/guile-xyz.scm (guile-lens) [phases]{run-hall}: replace "dist" to "build-system". Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-08-01gnu: xdot: Build with librsvg-for-system.Denis 'GNUtoo' Carikli
* gnu/packages/graphviz.scm (xdot)[inputs]: Replace librsvg with librsvg-for-system. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-08-01gnu: Add cardpeek.Denis 'GNUtoo' Carikli
* gnu/packages/security-token.scm (cardpeek): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-08-01gnu: python-sep: Update to 1.2.1Sharlatan Hellseher
* gnu/packages/astronomy.scm: (python-sep): Update to 1.2.1. Inherit from libsep Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-08-01gnu: Add libsepSharlatan Hellseher
* gnu/packages/astronomy.scm: (libsep): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-08-01gnu: gnutls: Add 3.7.7.Ludovic Courtès
* gnu/packages/tls.scm (gnutls-latest): New variable.
2022-08-01gnu: python-bbknn: Set NUMBA_CACHE_DIR.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-bbknn)[arguments]: Add phase 'set-numba-cache-dir.
2022-08-01gnu: python-umap-learn: Disable unreliable test.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python-umap-learn)[arguments]: Disable test_densmap_trustworthiness_on_iris_supervised.
2022-08-01gnu: python-umap-learn: Set NUMBA_CACHE_DIR.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python-umap-learn)[arguments]: Add phase to set NUMBA_CACHE_DIR.
2022-07-31gnu: jami: Apply upstream patch that fixes a usability issue.Maxim Cournoyer
* gnu/packages/patches/jami-fix-esc-bug.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/jami.scm (%jami-sources): Apply it.
2022-07-31gnu: jami: Update to 20220726.1515.da8d1da.Maxim Cournoyer
* gnu/packages/jami.scm (jami): Update to 20220726.1515.da8d1da. [configure-flags]: New argument. [phases]{fix-version-string}: Adjust file name. {use-desktop-opengl}: Delete obsolete phase. {patch-source}: New phase. [native-inputs]: Add googletest and vulkan-headers. Replace qttools-5 with qttools. [inputs]: Add libxkbcommon, qt5compat, qtnetworkauth, qtpositioning and vulkan-loader. Remove qtwebengine-5, qtwebchannel-5, qtgraphicaleffects, qtquickcontrols-5 and qtquickcontrols2-5. Update qtsvg-5, qtmultimedia-5 and qtdeclarative-5 to their Qt 6 equivalent.
2022-07-31gnu: Deprecate jami-gnome for jami.Maxim Cournoyer
* gnu/packages/jami.scm (jami-gnome): Delete package, deprecating it for jami.
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