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2018-06-05build-system/r: Update to Bioconductor 3.7.Ricardo Wurmus
This is a follow-up to 41f17554d88795bf35fbfc3e05301a6d2f64cca0. * guix/build-system/r.scm (bioconductor-uri): Update to version 3.7.
2018-05-10gnu: android-make-stub: Update to 0.6.0.Danny Milosavljevic
* gnu/packages/android.scm (android-make-stub): Update to 0.6.0. * guix/build-system/android-ndk.scm (android-ndk-build): Modify. (lower): Modify.
2018-05-10gnu: Add android-googletest.Danny Milosavljevic
* gnu/packages/android.scm (android-googletest): New variable. * guix/build-system/android-ndk.scm (android-ndk-build): Use it.
2018-05-10build-system: android-ndk: Support unit tests.Danny Milosavljevic
* guix/build-system/android-ndk.scm (android-ndk-build): Add googletest. * guix/build/android-ndk-build-system.scm (check): Check whether tests are enabled. Run root-level tests as well.
2018-05-09build: Add the Android NDK build-system.Danny Milosavljevic
* guix/build-system/android-ndk.scm: New file. * guix/build/android-ndk-build-system.scm: New file. * Makefile.am: Add them.
2018-04-20build-system: emacs: Add improved check phase.Maxim Cournoyer
* guix/build-system/emacs.scm (emacs-build): Add #:test-command keyword argument. Remove #:configure-flags and #:test-target keyword arguments. * guix/build/emacs-build-system.scm (check): New procedure. (%standard-phases): Register check phase after the build phase. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2018-03-30gnu: rust: Update rust to 1.24.1.Nikolai Merinov
* gnu/packages/rust.scm (rust-bootstrap): Freeze bootstrap version to 1.22.1. Reorganize bootstrap binaries to match new "rust" package structure with two ouputs "out" with Rust compiler and "cargo" with Cargo package manager. Replace all "system*" by "invoke". (rust-1.23): Rename "rustc" to "rust". Update sha256 for tarball. Add cargo related dependencies. Install "cargo" as separate "rust" output. Remove substitutes for parts that were fixed in "rustc" source code. Install documentation to separate "doc" output. Update configuration according to changes in "rustc" source code. Replace all "system*" by "invoke". (rust): Create package for 1.24.1 rust release based on rust-1.23 release. * guix/build-system/cargo.scm (default-rust): Replace "default-cargo" and "default-rustc" functions with "default-rust" function. (cargo-build-system): Take only one package as "rust" source. Use "rustc" of default output of "rust" package, use "cargo" as "cargo" output of "rust" package.
2018-03-20Revert "build-system/meson: Use 'target-arm32?' for armhf-linux case."Marius Bakke
This requires adding (guix utils) to the build inputs, and causes too many rebuilds for now. This reverts commit 24a2e9172a2d8970d57865c6130f2184385183a3.
2018-03-19build-system/meson: Use 'target-arm32?' for armhf-linux case.Efraim Flashner
* guix/build-system/meson.scm (lower, meson-build): Replace armhf-linux detection with 'target-arm32?' macro.
2018-03-18Merge branch 'master' into stagingMarius Bakke
2018-03-12build-system/meson: Skip the 'fix-runpath' phase on armhf.Marius Bakke
* guix/build-system/meson.scm (lower): Remove DEFAULT-PATCHELF from inputs on armhf. (meson-build): Ignore the 'fix-runpath' phase when building for arm systems.
2018-03-12build-system: minify: Do not import (ice-9 popen) in the build environment.Ricardo Wurmus
The (ice-9 popen) module should not be added to the imported-modules here, because that depends on the Guile that is used on the host side. * guix/build-system/minify.scm (%minify-build-system-modules): Remove import of (ice-9 popen).
2018-02-28build-system/trivial: Add support for #:allowed-references.Ludovic Courtès
* guix/build-system/trivial.scm (lower): Add #:allowed-references and keep it in the 'arguments' field. (trivial-build): Add #:allowed-references. Add 'canonicalize-reference'. Pass #:allowed-references to 'build-expression->derivation'. (trivial-cross-build): Likewise. * tests/packages.scm ("trivial with #:allowed-references"): New test.
2018-02-09Merge branch 'master' into core-updatesMark H Weaver
2018-02-05emacs-build-system: Reinstate the check phase.Maxim Cournoyer
* guix/build/emacs-build-system.scm (%standard-phases): Reinstate the check phase from the gnu-build-system. * guix/build-system/emacs.scm (emacs-build)[tests?]: But do not enable it by default. [parallel-tests?]: Add argument. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-01-01build-system/glib-or-gtk: Don't generate 'icon-theme.cache'.Danny Milosavljevic
* guix/build-system/glib-or-gtk.scm (glib-or-gtk-build): Don't generate 'icon-theme.cache'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-12-21build-system/gnu: Check whether the cross-libc has a "static" output.Ludovic Courtès
This is a followup to 614fffe4270cef308573a6d9cef650f3972875af, which broke cross-compilation to i686-w64-mingw32. * guix/build-system/gnu.scm (standard-cross-packages): Add "cross-libc:static" only when LIBC has a "static" output.
2017-12-20build-system/gnu: Add the "static" output of libc in cross environments.Ludovic Courtès
Fixes a regression whereby the host libc.a would be missing when cross-compiling. This is a followup to commit 6dff905e51202bbdebbad8811b6509584d12a796. * guix/build-system/gnu.scm (standard-cross-packages): Add the "cross-libc:static".
2017-12-19Merge branch 'master' into core-updatesMarius Bakke
2017-12-10build-system/asdf: Use 'mlambda'.Ludovic Courtès
* guix/build-system/asdf.scm (package-with-build-system): Use 'mlambda' instead of 'memoize'.
2017-12-05Merge branch 'master' into core-updatesMarius Bakke
2017-11-30build-system: Add scons-build-system.Arun Isaac
* guix/build-system/scons.scm: New file. * guix/build/scons-build-system.scm: New file. * Makefile.am (MODULES): Register them. * doc/guix.texi (Build Systems): Add scons-build-system.
2017-11-19Merge branch 'master' into core-updatesMarius Bakke
2017-11-17build-system/go: Don't let Go executables refer to the Go compiler.Leo Famulari
* guix/build/go-build-system.scm (remove-store-reference, remove-go-references): New procedures. (%standard-phases): Add 'remove-go-references' phase. * guix/build-system/go.scm (go-build): Add allow-go-reference? key.
2017-11-08build-system/gnu: Add 'install-license-files' phase.Ludovic Courtès
Suggested by Dave Love <fx@gnu.org>. * guix/build-system/gnu.scm (%license-file-regexp): New variable. (gnu-build): Add #:license-file-regexp and use it. (gnu-cross-build): Likewise. * guix/build/gnu-build-system.scm (%license-file-regexp): New variable. (install-license-files): New procedure. (%standard-phases): Add it.
2017-11-07guix: Add archive support for bioconductor-uri.Ricardo Wurmus
* guix/build-system/r.scm (bioconductor-uri): Also return the archive URL. * guix/import/cran.scm (latest-bioconductor-release, fetch-description): Adjust because bioconductor-uri now returns a list.
2017-10-24build-system/go: Parameterize installing the source code.Leo Famulari
* guix/build-system/go.scm (go-build): Add install-source? key. * guix/build/go-build-system.scm (install-source): Check if install-source? is true.
2017-10-21Use HTTPS for bioconductor.org.Tobias Geerinckx-Rice
* doc/guix.texi (Invoking guix import, Invoking guix refresh): Use HTTPS for bioconductor.org URLs. * gnu/packages/bioinformatics.scm (r-annotate, r-geneplotter, r-genefilter) (r-deseq2, r-dexseq, r-annotationforge, r-rbgl, r-gseabase, r-category) (r-gostats, r-shortread, r-biocgenerics, r-biocinstaller, r-biocviews) (r-biocstyle, r-bioccheck, r-s4vectors, r-iranges, r-genomeinfodbdata) (r-genomeinfodb, r-xvector, r-genomicranges, r-biobase, r-annotationdbi) (r-biomart, r-biocparallel, r-biostrings, r-rsamtools, r-delayedarray) (r-summarizedexperiment, r-genomicalignments, r-rtracklayer) (r-genomicfeatures, r-graph, r-topgo, r-bsgenome, r-impute, r-seqpattern) (r-seqlogo, r-motifrg, r-bamsignals, r-mutationalpatterns, r-tximport) (r-rhdf5, r-chipseq, r-sva, r-affy, r-vsn, r-mzid, r-msnid) (r-interactivedisplaybase, r-annotationhub)[home-page]: Likewise. * gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene) (r-go-db, r-bsgenome-hsapiens-1000genomes-hs37d5, r-org-hs-eg-db) (r-org-ce-eg-db, r-org-dm-eg-db, r-org-mm-eg-db) (r-bsgenome-hsapiens-ucsc-hg19, r-bsgenome-mmusculus-ucsc-mm9) (r-bsgenome-mmusculus-ucsc-mm10, r-txdb-mmusculus-ucsc-mm10-knowngene) (r-bsgenome-celegans-ucsc-ce6, r-bsgenome-celegans-ucsc-ce10) (r-bsgenome-dmelanogaster-ucsc-dm3, r-copyhelper)[source, home-page]: Likewise. * gnu/packages/statistics.scm (r-rcurl)[source]: Likewise. * guix/build-system/r.scm (bioconductor-uri): Likewise. * guix/import/cran.scm (%cran-url, bioconductor-package?) (bioconductor-data-package?, bioconductor-experiment-package?): Likewise.
2017-10-12build: Add the Go build system.Leo Famulari
* guix/build-system/go.scm, guix/build/go-build-system.scm: New files. * Makefile.am (MODULES): Add new files. * doc/guix.texi (Build Systems): Document the go-build-system.
2017-10-03guix: ant-build-system: Add #:test-include and #:test-exclude arguments.Julien Lepiller
* guix/build-system/ant.scm: Add #:test-include and #:test-exclude arguments. * guix/build/ant-build-system.scm: Generate test list from arguments. * doc/guix.texi (Build Systems): Document it.
2017-10-03guix: ant-build-system: Add main-class support.Julien Lepiller
* guix/build-system/ant.scm: New #:main-class argument * guix/build/ant-build-system.scm: Generate a manifest file with additional properties. * doc/guix.texi (Build Systems): Document it.
2017-09-26build-system: meson: Fix typo in variable name.Mohammed Sadiq
* guix/build-system/meson.scm (lower): fix typo in glib-or-gtk?.
2017-09-16build-system: Add 'meson-build-system'.Peter Mikkelsen
* Makefile.am (MODULES): Add 'guix/build-system/meson.scm' and 'guix/build/meson-build-system.scm'. * guix/build-system/meson.scm: New file. * guix/build/meson-build-system.scm: New file. * doc/guix.texi (Build Systems): Add 'meson-build-system'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-06Merge branch 'master' into core-updatesMark H Weaver
2017-08-04build: Add minify build system.Ricardo Wurmus
* guix/build-system/minify.scm: New file. * guix/build/minify-build-system: New file. * Makefile.am (MODULES): Add new files. * doc/guix.texi (Build Systems): Document minify-build-system.
2017-07-10Merge branch 'master' into core-updatesLeo Famulari
2017-07-09build-system: texlive: Build union in configure phase.Ricardo Wurmus
This allows us to use texmf.cnf instead of having to set all required environment variables manually. * guix/build/texlive-build-system.scm (configure): New procedure. (build): Simplify. (%standard-phases): Add configure phase. * guix/build-system/texlive.scm (texlive-build): Include (guix build union) in modules. (%texlive-build-system-modules): Likewise.
2017-06-26Merge branch 'master' into core-updatesMark H Weaver
2017-06-20gnu: Move contents of zip module into compression module.Arun Isaac
* gnu/packages/zip.scm (zip, unzip, zziplib, perl-zip): Move to... * gnu/packages/compression.scm: ...here. * gnu/packages/zip.scm: Delete file. * gnu/local.mk (GNU_SYSTEM_MODULES): Unregister deleted file. * po/packages/POTFILES.in: Unregister deleted file. * gnu/packages/{audio, avr, bioinformatics, busybox, cdrom, ci, compression, docbook, documentation, fonts, fpga, game-development, games, gl, gnome, gnuzilla, graphics, guile, haskell, image, java, kodi, ldc, libreoffice, markup, maths, mc, monitoring, music, php, pretty-print, python, scheme, smalltalk, statistics, synergy, tex, textutils, video, web-browsers, xml, zip}.scm, guix/build-system/{ant, font}.scm, guix/{download, packages}.scm: Adapt module import.
2017-06-20Merge branch 'master' into core-updatesMark H Weaver
2017-06-19build-system/texlive: Update to texlive-2017.1, revision 44591.Ricardo Wurmus
* guix/build-system/texlive.scm (%texlive-tag): Change to texlive-2017.1. (%texlive-revision): Change to 44591.
2017-06-18Merge branch 'master' into core-updatesMark H Weaver
2017-06-15build-system: Add 'texlive-build-system'.Ricardo Wurmus
* guix/build-system/texlive.scm: New file. * guix/build/texlive-build-system.scm: New file. * Makefile.am (MODULES): Add them. * doc/guix.texi (Build Systems): Document it. * gnu/packages/tex.scm (%texlive-tag, %texlive-revision): Remove variables. (texlife-ref): Remove procedure.
2017-06-10Merge branch 'master' into core-updatesMarius Bakke
2017-06-08build-system: emacs: Factorize include/exclude default arguments.Maxim Cournoyer
The `install' phase of the emacs-build-system contained default arguments duplicated from the host side `emacs-build' procedure. This change factorizes them so that: 1. They are not duplicated. 2. They can be reused and extended easily when defining emacs packages. * guix/build/emacs-build-system.scm (%default-include, %default-exclude): New variables. (install): Use %default-include and %default-exclude as default arguments. * guix/build-system/emacs.scm: Use and re-export %default-include, %default-exclude from (guix build emacs-build-system). (emacs-build): Use %default-include and %default-exclude as default arguments. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-06-03Merge branch 'master' into core-updatesMarius Bakke
Conflicts: gnu/packages/image.scm (incorporated libtiff graft)
2017-05-30build-system/cmake: Add support for cross compilation.Ricardo Wurmus
Fixes <https://bugs.gnu.org/26897>. * guix/build-system/gnu.scm: Export standard-cross-packages. * guix/build-system/cmake.scm (cmake-cross-build): New procedure. (lower): Add support for cross-builds. * guix/build/cmake-build-system.scm (configure): Handle "target" argument.
2017-05-28build-system: Add 'font-build-system'.Arun Isaac
* Makefile.am (MODULES): Add 'guix/build-system/font.scm' and 'guix/build/font-build-system.scm'. * guix/build-system/font.scm: New file. * guix/build/font-build-system.scm: New file. * doc/guix.texi (Build Systems): Add 'font-build-system'.
2017-05-25build-system: gnu: Fix cross-gcc call.Ricardo Wurmus
This is a follow-up to 7b3318e34f4e2743254a88b908859901db960e9a. * guix/build-system/gnu.scm (standard-cross-packages): Use keyword arguments in cross-gcc call.
2017-05-23build-system: emacs: Install only a subset of files.Arun Isaac
* guix/build/emacs-build-system.scm (install): Install files matching #:include while excluding files matching #:exclude. * guix/build-system/emacs.scm (emacs-build): Add keyword arguments #:include and #:exclude.
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