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* guix/import/cran.scm (invalid-packages): Add "use_c17".
Change-Id: Ie3b6455d4eff97811057cd82dca460367a4583e5
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* guix/cpu.scm (cpu->gcc-architecture): Update list of CPUs from the
list in gcc.
Change-Id: Ifcd26c143fc9e3aaa0c5514e1dac4908d2780255
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* guix/cpu.scm (gcc-architecture->micro-architecture-level): Sort
gcc-architectures which have AVX512F support into x86-64-v4.
Change-Id: I8af0ceb692eefec7433e1fd5149379244da799c4
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* guix/cpu.scm (cpu->gcc-architecture): Add graniterapids-d,
pantherlake, clearwaterforest, arrowlake-s, yongfeng. Remove
grandridge. Update CPU flags for searching to match architecture.
(gcc-architecture->micro-architecture-level): Adjust listed
architectures and sort in order used above.
Change-Id: I186ab6e396e36c34f7c61827e02f637716993141
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* gnu/packages/perl6.scm (perl6-tap-harness): Update to 0.3.5.
[source]: Update URL. Reindent.
[arguments]: Replace obsolete prove6 script with manual Raku invocation
in 'check' phase.
[home-page]: Update.
[synopsis]: Replace mention of Perl with Raku.
* gnu/packages/rakudo-build-system.scm (check): Replace obsolete prove6
script with manual Raku invocation.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/perl6.scm (rakudo): Update to 2022.04.
[source]: Add snippet to delete bundled 3rdparty directory.
[arguments]: Add 'remove-calls-to-git', 'fix-paths' and
'disable-failing-tests' phases. Remove 'patch-source-date' phase. Adjust
files in 'patch-more-shebangs' phase and sort them. Remove redundant
'./' from 'configure' phase. Replace Perl extensions and paths with Raku
equivalents in 'install-dist-tool' phase.
[native-inputs]: Add nqp-configure.
[synopsis, description]: Replace mentions of Perl with Raku.
* guix/build/rakudo-build-system.scm (install): Replace Perl extension
with Raku extension.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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Until now the .go files were generated first, and only after that the .scm
files were installed into the target location. That led to a lot of messages
about `source file ... newer than compiled' if the custom 'check phase tried
to load the compiled files.
Swapping the order of the actions resolves the issue allowing the tests to be
written without lot of noise in the build log.
For final artifacts it was not a problem, since daemon resets the timestamps.
* guix/build/guile-build-system.scm (build): Install .scm before producing
.go.
Change-Id: I3428d144fcbaa6c904ee662193c3bca82589e344
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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The inner (let) was on the same level as the outer one, which was confusing.
* guix/build/guile-build-system.scm (build): Fix indentation.
Change-Id: I701b61747c270b185eac9377b066748baa2b3d20
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* guix/build/guile-build-system.scm (install-documentation): Fix typo in
documentation string.
Change-Id: I8940591fcbf8222c8f8365dabbac0e8300cad84c
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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Change-Id: Iee31c5de29c357c822f60df4fa8ce758779eb349
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* guix/import/json.scm (json->code): Do not return package names after
package expressions.
* doc/package-hello.json: Fix comma errors and use valid greeter URL.
Change-Id: Id71924e72f690a9bda5fbfdb65a443029adfd158
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* guix/scripts/import.scm (guix-import): Discard args.
Change-Id: Icce5cd0daf9011f7ddde7904113b31b547f063ef
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* guix/scripts/import.scm (guix-import): Add 'insert' option.
(import-as-definitions): Add procedure.
* doc/guix.texi (Invoking guix import): Describe 'insert' option.
Change-Id: Id87ea707123630e12bcb6788599acac6895b26c4
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* guix/utils.scm (find-definition-insertion-location): Add and export
procedure.
* tests/utils.scm ("find-definition-insertion-location"): Add test.
Change-Id: Ie17e1b4a94790f58518ce121411a38d357f49feb
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* guix/utils.scm (define-module): Use (guix read-print) and export
(insert-expression).
(insert-expression): Add procedure.
* tests/utils.scm ("insert-expression"): Add test.
Change-Id: I971a43a78aa6ecaaef33c1a7a0db4b287eb85036
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* guix/scripts/import.scm (guix-import): Wrap package expressions.
Change-Id: Ic4d986a4706a692b2fecd6fded8ac72ab6311687
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* guix/build/cargo-build-system.scm (configure): Add entry for
x86_64-linux-gnux32 in CARGO_BUILD_TARGET.
Change-Id: Iae363d4e7962af1ebd4f2ed0f4276663b2245580
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Fixes a bug whereby ‘processes’ would include kernel threads, thereby
leading the ‘stop’ method of ‘user-processes’ to wait indefinitely for a
kernel thread. Code taken from the Shepherd.
Fixes <https://issues.guix.gnu.org/68800>.
* guix/build/syscalls.scm (kernel?): Remove.
(linux-process-flags, linux-kernel-thread?, pseudo-process?): New
procedures.
(PF_KTHREAD): New variable.
(processes): Use ‘pseudo-process?’ instead of ‘kernel?’.
Reported-by: Tomas Volf <~@wolfsden.cz>
Change-Id: I8c439cdaf868a8f899de7fe500ce8bf10e5fc290
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Reported by Alexander Blume at
<https://github.com/BIMSBbioinfo/guix.install/issues/4>.
* guix/import/cran.scm (format-inputs): Use UPSTREAM-INPUT-DOWNSTREAM-NAME
when %INPUT-STYLE is set to 'SPECIFICATION.
Change-Id: I2f0963af197896aafd613b253d8712e41a716e52
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Ensure that extra inputs end up in the correct order.
* guix/upstream.scm (update-package-inputs)[filtered-inputs]: Sort new list of
inputs.
Change-Id: Ia5fddd8103a33c79426995057fcce61c2e9e5a72
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* gnu/packages/backup.scm (disarchive): Update to 0.6.0; add
'guile-bzip2' as an input.
* gnu/packages/package-management.scm (guix): Add 'guile-bzip2' as
an input to enable bzip2 support when using Disarchive.
* guix/self.scm (%packages): Add 'guile-bzip2'.
(compiled-guix): Include 'guile-bzip2' as a dependency when building
the 'guix' command.
* etc/disarchive-manifest.scm (tarball-origin?): Include bzip2
tarballs.
Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
Change-Id: I4da479054f6bef225f5ea979c091152f8a9e51d5
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* guix/swh.scm (lookup-directory): Fix docstring.
Change-Id: Ia1fd9b2bc9184364cebbd30ee84c9fdea4ba897c
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* guix/build/git.scm (git-fetch-with-fallback): Add #:hash
and #:hash-algorithm. Try ‘swh-download-directory-by-nar-hash’ before
‘swh-download’ when #:hash is provided.
* guix/git-download.scm (git-fetch/in-band*): Pass #:hash
and #:hash-algorithm to ‘git-fetch-with-fallback’.
* guix/scripts/perform-download.scm (perform-git-download): Likewise.
Change-Id: Ic875a7022fd78c9fac32e92ad4f8ce4d81646ec5
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While this method is new and nar-sha256 ExtIDs are currently available
only for new visits, it is fundamentally more reliable than the other
methods, which is why it comes first.
* guix/lint.scm (check-archival)[lookup-by-nar-hash]: New procedure.
Call ‘lookup-by-nar-hash’ before the other lookup methods.
* tests/lint.scm ("archival: content available")
("archival: content unavailable but disarchive available")
("archival: missing revision")
("archival: revision available"): Add a 404 response corresponding to
the ‘lookup-external-id’ request.
* tests/lint.scm ("archival: nar-sha256 extid available"): New test.
Change-Id: I4a81d6e022a3b72e6484726549d7fbae627f8e73
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This allows us to take advantage of content addressing by giving SWH the
expected nar hash.
* guix/swh.scm (swh-download-directory-by-nar-hash): New procedure.
Change-Id: I0494ee15a3cde390a22552de7c2246e0314ba7b5
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This interface was deployed at archive.softwareheritage.org a few days
ago. Our main use case will be looking up directories by “nar-sha256”
hashes.
* guix/swh.scm (<external-id>): New JSON-mapped record type.
(lookup-external-id, lookup-directory-by-nar-hash): New procedures.
* tests/swh.scm (%external-id): New variable.
("lookup-directory-by-nar-hash"): New test.
Change-Id: Ib671c7798aeb6f8132ac78f2b06b9285da8e7bd5
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Today, URLs like
https://archive.softwareheritage.org/api/1/vault/flat/swh:1:dir:84a8b34591712c0a90bab0af604188bcd1fe3153/raw/
redirect to https://swhvaultstorage.blob.core.windows.net/…. This
change fixes ‘vault-fetch’ to follow these.
Fixes <https://issues.guix.gnu.org/69058>.
* guix/swh.scm (http-get/follow): New procedure.
(vault-fetch): Use it instead of ‘http-get*’.
Change-Id: Id6b9585a9ce6699a2274b99c9a6d4edda1018b02
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Previously the command would crash when passed an invalid fingerprint on
the command line.
* guix/scripts/git/authenticate.scm (guix-git-authenticate)
[openpgp-fingerprint*]: New procedure.
Use it instead of ‘openpgp-fingerprint’.
Change-Id: I99e0549781382f36a684a84449b603e00b53778d
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Matching the change in 2d40e6f7ab04ec367a9a7fc1af3daa507fb60d3c otherwise the
cross build derivations are broken, as was the case for emacs-pde.
* guix/build-system/perl.scm (perl-cross-build) [module-build-flags]: Accept
gexps.
Change-Id: I2dc85bc50bc077581e3abfc5baaedc6487118192
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Previously, ‘latest-channel-instances’ would perform a depth-first
traversal of channels. Since dependencies specified in ‘.guix-channel’
are usually less specific that those provided by the user, this would
lead to the use of instances corresponding to those less specific specs,
which in turn might declare dependencies that do not exist for the more
specific instances.
This commit changes ‘latest-channel-instances’ to perform a
breadth-first traversal, thereby giving user-supplied channels higher
precedence over dependencies found via ‘.guix-channel’.
Fixes <https://issues.guix.gnu.org/68822>.
* guix/channels.scm (latest-channel-instances)[ignore?]: Remove.
[instance-name, same-named?, more-specific?]: New procedures.
Rewrite as a breadth-first traversal using a regular loop.
* tests/channels.scm ("latest-channel-instances reads dependencies from most-specific instance"):
New test.
Change-Id: Iba518145cfd209f04293a56246dbfee3b714650b
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* guix/scripts/describe.scm (%display-checkout-info):
Support 'channels-sans-intro' format.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* guix/scripts/weather.scm (show-help, %options): Add ‘-e’.
(guix-weather): Handle it.
* doc/guix.texi (Invoking guix weather): Document it.
Change-Id: I6dc97ec2b8226b57be33247b05a34c23b573a64f
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* guix/scripts/download.scm (git-download-to-store*): Add new variable.
(copy-recursively-without-dot-git): New variable.
(git-download-to-file): Add new variable.
(show-help): Add 'git', 'commit', 'branch' and 'recursive'options
help message.
(%default-options): Add default value for 'git-reference' and
'recursive' options.
(%options): Add 'git', 'commit', 'branch' and 'recursive' command
line options.
(guix-download) [hash]: Compute hash with 'file-hash*' instead of
'port-hash' from (gcrypt hash) module. This allows us to compute
hashes for directories.
* doc/guix.texi (Invoking guix-download): Add @item entries for
`git', `commit', `branch' and `recursive' options. Add a paragraph in
the introduction.
* tests/guix-download.sh: New tests. Move variables and trap definition
to the top of the file.
Change-Id: Ic2c428dca4cfcb0d4714ed361a4c46609339140a
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Reviewed-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
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* guix/import/cran.scm (phases-for-inputs): Add 'set-HOME phase when
ExperimentHub is among inputs.
Change-Id: Ie3a2443934704eed8694a76a651b806209722421
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* guix/import/cran.scm (latest-bioconductor-release): Determine package type
and pass it to LATEST-BIOCONDUCTOR-PACKAGE-VERSION and BIOCONDUCTOR-URI.
(%bioconductor-updater): Compose all bioconductor predicates.
Change-Id: Icef3ae05e28ed0f2796d9abf90e51821d2dfcc4c
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* doc/guix.texi: Document or1k-elf platform.
* guix/platforms/or1k.scm (or1k-elf): New variable.
* Makefile.am (MODULES): Add guix/platforms/or1k.scm.
Change-Id: I3f71a0fa97f1ebd2bbdbf6cd00a93b477a123648
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* guix/import/cran.scm (phases-for-inputs, maybe-arguments): New procedures.
(description->package): Splice in result of MAYBE-ARGUMENTS.
Change-Id: I578e1903f37c91bf865f0be49b04187ec372ed05
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* guix/build-system/perl.scm (perl-build) [module-build-flags]: Accept gexps.
Change-Id: If1daa4d9a8cf97824b75f2113f4d7d83256463ce
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* guix/import/cran.scm (transform-sysname): Add case for "python-packaging".
Change-Id: I0d125fb3858c009a8527d60f56754b9b9c90b409
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This is useful for cached mass imports.
* guix/import/cran.scm (fetch-description-from-tarball): Accept optional
download keyword.
(fetch-description): Accept optional replacement-download argument.
Change-Id: Ic917074656ac34a24c8e7eea3d3e0528fc5180b3
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These were encountered in a mass import of Bioconductor packages.
* guix/import/cran.scm (invalid-packages): Add "rtools".
(transform-sysname): Add aliases for Python and bioinformatics packages.
Change-Id: I97e13cee10c2ee85d4b9296d91afccbdbcec4946
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* guix/import/cran.scm (invalid-packages): Add "build-essential".
(transform-sysname): Add aliases for openssl, libxml2, and zlib.
Change-Id: Ia142ebc388dbcd47caf3b2c5165bc21227bc1832
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* guix/import/crate.scm (find-crate-version): Reuse
nonyanked-crate-versions, max-crate-version-of-semver.
Change-Id: I976a3b5a397f0d6a7d723804a98356544bfc7da3
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* guix/import/crate.scm (min-element, max-crate-version-of-semver,
nonyanked-crate-versions): New procedures.
(import-release)[version]: Update to the requested version or the newest
semver-compatible version.
Co-authored by David Elsing <david.elsing@posteo.net>
Change-Id: I72b081147c4eb9faf482f159b7145aaaf9f91f29
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The default value of #f led to ("..." . #f) being passed further down as an
entry point. That is not an issue for command line invocation, since in that
code path '() was already used as a default value, but it broke docker system
test with the following error:
building /gnu/store/dll8jj6h5pfgf6ya9skk1g1546smwbib-docker-pack.tar.gz.drv...
tar: Removing leading `/' from member names
Backtrace:
6 (primitive-load "/gnu/store/g8hqzccfvn4mkm41jqs65c27gs7?")
In ./guix/docker.scm:
268:6 5 (build-docker-image "/gnu/store/zi2f5dfdrhviinm6jxp3cj?" ?)
In ice-9/ports.scm:
433:17 4 (call-with-output-file _ _ #:binary _ #:encoding _)
476:4 3 (_ _)
In ./guix/docker.scm:
270:21 2 (_)
123:40 1 (config "1996ead589ab366473d935c4d5bd0c38b998f3b299847?" ?)
In unknown file:
0 (list->vector ("/gnu/store/1pvqd30qi1aigjdf7s7l8v7?" . #))
ERROR: In procedure list->vector:
In procedure vector: Wrong type argument in position 1: ("/gnu/store/1pvqd30qi1aigjdf7s7l8v7wpvrrhfkj-profile/bin/guile" . #f)
note: keeping build directory `/tmp/guix-build-docker-pack.tar.gz.drv-16'
builder for `/gnu/store/dll8jj6h5pfgf6ya9skk1g1546smwbib-docker-pack.tar.gz.drv' failed with exit code 1
build of /gnu/store/dll8jj6h5pfgf6ya9skk1g1546smwbib-docker-pack.tar.gz.drv failed
View build log at '/var/log/guix/drvs/dl/l8jj6h5pfgf6ya9skk1g1546smwbib-docker-pack.tar.gz.drv.gz'.
cannot build derivation `/gnu/store/dq9qk1ba0f07572m8ck3xws28x1b3rif-docker-test.drv': 1 dependencies couldn't be built
guix build: error: build of `/gnu/store/dq9qk1ba0f07572m8ck3xws28x1b3rif-docker-test.drv' failed
make: *** [Makefile:7044: check-system] Error 1
Breakage was introduced in 7d5168a2af3ed922c6a46985124fb73402cc8844.
* guix/scripts/pack.scm (docker-image)[entry-point-argument]: Default to '().
Change-Id: If5fc1f8bcb0981df11409636e71f2ca91b05612f
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guix/scripts/size.scm (guix-size): Parameterize %current-system.
Change-Id: Ia0c1ebff4397aa211f73360925f7c688d59b515a
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
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* doc/guix.texi (Invoking guix import): Mention '--allow-yanked'.
* guix/import/crate.scm (make-crate-sexp): Add yanked? argument. For
yanked packages, use the full version suffixed by "-yanked" for
generated variable names and add a comment and package property.
(crate->guix-package): Add allow-yanked? argument and if it is set to #t,
allow importing yanked crates if no other version matching the
requirements exists.
[find-package-version]: Packages previously marked as yanked are only
included if allow-yanked? is #t and then take the lowest priority.
[find-crate-version]: If allow-yanked? is #t, also consider yanked
versions with the lowest priority.
[dependency-name+version]: Rename to ...
[dependency-name+version+yanked] ...this. Honor allow-yanked? and choose
between an existing package and an upstream package. Exit with an error
message if no version fulfilling the requirement is found.
[version*]: Exit with an error message if the crate version is not found.
(cargo-recursive-import): Add allow-yanked? argument.
* guix/read-print.scm: Export <comment>.
* guix/scripts/import/crate.scm: Add "--allow-yanked".
* tests/crate.scm: Add test 'crate-recursive-import-only-yanked-available'.
[sort-map-dependencies]: Adjust accordingly.
[remove-yanked-info]: New variable.
Adjust test 'crate-recursive-import-honors-existing-packages'.
(test-bar-dependencies): Add yanked dev-dependencies.
(test-leaf-bob-crate): Add yanked versions.
(rust-leaf-bob-3.0.2-yanked): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
Change-Id: I175d89b39774e6b57dcd1f05bf68718d23866bb7
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If --recursive-dev-dependencies is specified, development dependencies
are also included for all recursively imported packages.
* doc/guix.texi (Invoking guix import): Mention --recursive-dev-dependencies.
* guix/import/crate.scm (crate-recursive-import): Add
recursive-dev-dependencies? argument.
* guix/scripts/import/crate.scm (show-help, guix-import-crate): Add
"--recursive-dev-dependencies".
* tests/crate.scm: Test both #f and #t for #:recursive-dev-dependencies?
in the 'cargo-recursive-import' test.
(test-root-dependencies): Add intermediate-c as dev-dependency.
(test-intermediate-c-crate, test-intermediate-c-dependencies): New
variables.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
Change-Id: Iae89794681155d77f128733120e60f03bc297717
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* guix/import/crate.scm (crate-recursive-import): Apply memoize outside the
lambda passed to recursive-import in order to actually use the memoization.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* guix/scripts/system.scm (show-help, %docker-format-options, %options,
%default-options, show-docker-format-options,
show-docker-format-options/detailed, process-action): Handle '--max-layers'
option.
* gnu/system/image.scm (system-docker-image): Same.
* gnu/image.scm (<image>)[max-layers]: New record field.
Change-Id: I2726655aefd6688b976057fd5a38e9972ebfc292
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