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Fixes a bug whereby ‘processes’ would include kernel threads, thereby
leading the ‘stop’ method of ‘user-processes’ to wait indefinitely for a
kernel thread. Code taken from the Shepherd.
Fixes <https://issues.guix.gnu.org/68800>.
* guix/build/syscalls.scm (kernel?): Remove.
(linux-process-flags, linux-kernel-thread?, pseudo-process?): New
procedures.
(PF_KTHREAD): New variable.
(processes): Use ‘pseudo-process?’ instead of ‘kernel?’.
Reported-by: Tomas Volf <~@wolfsden.cz>
Change-Id: I8c439cdaf868a8f899de7fe500ce8bf10e5fc290
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Reported by Alexander Blume at
<https://github.com/BIMSBbioinfo/guix.install/issues/4>.
* guix/import/cran.scm (format-inputs): Use UPSTREAM-INPUT-DOWNSTREAM-NAME
when %INPUT-STYLE is set to 'SPECIFICATION.
Change-Id: I2f0963af197896aafd613b253d8712e41a716e52
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Ensure that extra inputs end up in the correct order.
* guix/upstream.scm (update-package-inputs)[filtered-inputs]: Sort new list of
inputs.
Change-Id: Ia5fddd8103a33c79426995057fcce61c2e9e5a72
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* gnu/packages/backup.scm (disarchive): Update to 0.6.0; add
'guile-bzip2' as an input.
* gnu/packages/package-management.scm (guix): Add 'guile-bzip2' as
an input to enable bzip2 support when using Disarchive.
* guix/self.scm (%packages): Add 'guile-bzip2'.
(compiled-guix): Include 'guile-bzip2' as a dependency when building
the 'guix' command.
* etc/disarchive-manifest.scm (tarball-origin?): Include bzip2
tarballs.
Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
Change-Id: I4da479054f6bef225f5ea979c091152f8a9e51d5
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* guix/swh.scm (lookup-directory): Fix docstring.
Change-Id: Ia1fd9b2bc9184364cebbd30ee84c9fdea4ba897c
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* guix/build/git.scm (git-fetch-with-fallback): Add #:hash
and #:hash-algorithm. Try ‘swh-download-directory-by-nar-hash’ before
‘swh-download’ when #:hash is provided.
* guix/git-download.scm (git-fetch/in-band*): Pass #:hash
and #:hash-algorithm to ‘git-fetch-with-fallback’.
* guix/scripts/perform-download.scm (perform-git-download): Likewise.
Change-Id: Ic875a7022fd78c9fac32e92ad4f8ce4d81646ec5
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While this method is new and nar-sha256 ExtIDs are currently available
only for new visits, it is fundamentally more reliable than the other
methods, which is why it comes first.
* guix/lint.scm (check-archival)[lookup-by-nar-hash]: New procedure.
Call ‘lookup-by-nar-hash’ before the other lookup methods.
* tests/lint.scm ("archival: content available")
("archival: content unavailable but disarchive available")
("archival: missing revision")
("archival: revision available"): Add a 404 response corresponding to
the ‘lookup-external-id’ request.
* tests/lint.scm ("archival: nar-sha256 extid available"): New test.
Change-Id: I4a81d6e022a3b72e6484726549d7fbae627f8e73
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This allows us to take advantage of content addressing by giving SWH the
expected nar hash.
* guix/swh.scm (swh-download-directory-by-nar-hash): New procedure.
Change-Id: I0494ee15a3cde390a22552de7c2246e0314ba7b5
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This interface was deployed at archive.softwareheritage.org a few days
ago. Our main use case will be looking up directories by “nar-sha256”
hashes.
* guix/swh.scm (<external-id>): New JSON-mapped record type.
(lookup-external-id, lookup-directory-by-nar-hash): New procedures.
* tests/swh.scm (%external-id): New variable.
("lookup-directory-by-nar-hash"): New test.
Change-Id: Ib671c7798aeb6f8132ac78f2b06b9285da8e7bd5
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Today, URLs like
https://archive.softwareheritage.org/api/1/vault/flat/swh:1:dir:84a8b34591712c0a90bab0af604188bcd1fe3153/raw/
redirect to https://swhvaultstorage.blob.core.windows.net/…. This
change fixes ‘vault-fetch’ to follow these.
Fixes <https://issues.guix.gnu.org/69058>.
* guix/swh.scm (http-get/follow): New procedure.
(vault-fetch): Use it instead of ‘http-get*’.
Change-Id: Id6b9585a9ce6699a2274b99c9a6d4edda1018b02
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Previously the command would crash when passed an invalid fingerprint on
the command line.
* guix/scripts/git/authenticate.scm (guix-git-authenticate)
[openpgp-fingerprint*]: New procedure.
Use it instead of ‘openpgp-fingerprint’.
Change-Id: I99e0549781382f36a684a84449b603e00b53778d
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Matching the change in 2d40e6f7ab04ec367a9a7fc1af3daa507fb60d3c otherwise the
cross build derivations are broken, as was the case for emacs-pde.
* guix/build-system/perl.scm (perl-cross-build) [module-build-flags]: Accept
gexps.
Change-Id: I2dc85bc50bc077581e3abfc5baaedc6487118192
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Previously, ‘latest-channel-instances’ would perform a depth-first
traversal of channels. Since dependencies specified in ‘.guix-channel’
are usually less specific that those provided by the user, this would
lead to the use of instances corresponding to those less specific specs,
which in turn might declare dependencies that do not exist for the more
specific instances.
This commit changes ‘latest-channel-instances’ to perform a
breadth-first traversal, thereby giving user-supplied channels higher
precedence over dependencies found via ‘.guix-channel’.
Fixes <https://issues.guix.gnu.org/68822>.
* guix/channels.scm (latest-channel-instances)[ignore?]: Remove.
[instance-name, same-named?, more-specific?]: New procedures.
Rewrite as a breadth-first traversal using a regular loop.
* tests/channels.scm ("latest-channel-instances reads dependencies from most-specific instance"):
New test.
Change-Id: Iba518145cfd209f04293a56246dbfee3b714650b
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* guix/scripts/describe.scm (%display-checkout-info):
Support 'channels-sans-intro' format.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* guix/scripts/weather.scm (show-help, %options): Add ‘-e’.
(guix-weather): Handle it.
* doc/guix.texi (Invoking guix weather): Document it.
Change-Id: I6dc97ec2b8226b57be33247b05a34c23b573a64f
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* guix/scripts/download.scm (git-download-to-store*): Add new variable.
(copy-recursively-without-dot-git): New variable.
(git-download-to-file): Add new variable.
(show-help): Add 'git', 'commit', 'branch' and 'recursive'options
help message.
(%default-options): Add default value for 'git-reference' and
'recursive' options.
(%options): Add 'git', 'commit', 'branch' and 'recursive' command
line options.
(guix-download) [hash]: Compute hash with 'file-hash*' instead of
'port-hash' from (gcrypt hash) module. This allows us to compute
hashes for directories.
* doc/guix.texi (Invoking guix-download): Add @item entries for
`git', `commit', `branch' and `recursive' options. Add a paragraph in
the introduction.
* tests/guix-download.sh: New tests. Move variables and trap definition
to the top of the file.
Change-Id: Ic2c428dca4cfcb0d4714ed361a4c46609339140a
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Reviewed-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
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* guix/import/cran.scm (phases-for-inputs): Add 'set-HOME phase when
ExperimentHub is among inputs.
Change-Id: Ie3a2443934704eed8694a76a651b806209722421
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* guix/import/cran.scm (latest-bioconductor-release): Determine package type
and pass it to LATEST-BIOCONDUCTOR-PACKAGE-VERSION and BIOCONDUCTOR-URI.
(%bioconductor-updater): Compose all bioconductor predicates.
Change-Id: Icef3ae05e28ed0f2796d9abf90e51821d2dfcc4c
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* doc/guix.texi: Document or1k-elf platform.
* guix/platforms/or1k.scm (or1k-elf): New variable.
* Makefile.am (MODULES): Add guix/platforms/or1k.scm.
Change-Id: I3f71a0fa97f1ebd2bbdbf6cd00a93b477a123648
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* guix/import/cran.scm (phases-for-inputs, maybe-arguments): New procedures.
(description->package): Splice in result of MAYBE-ARGUMENTS.
Change-Id: I578e1903f37c91bf865f0be49b04187ec372ed05
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* guix/build-system/perl.scm (perl-build) [module-build-flags]: Accept gexps.
Change-Id: If1daa4d9a8cf97824b75f2113f4d7d83256463ce
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* guix/import/cran.scm (transform-sysname): Add case for "python-packaging".
Change-Id: I0d125fb3858c009a8527d60f56754b9b9c90b409
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This is useful for cached mass imports.
* guix/import/cran.scm (fetch-description-from-tarball): Accept optional
download keyword.
(fetch-description): Accept optional replacement-download argument.
Change-Id: Ic917074656ac34a24c8e7eea3d3e0528fc5180b3
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These were encountered in a mass import of Bioconductor packages.
* guix/import/cran.scm (invalid-packages): Add "rtools".
(transform-sysname): Add aliases for Python and bioinformatics packages.
Change-Id: I97e13cee10c2ee85d4b9296d91afccbdbcec4946
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* guix/import/cran.scm (invalid-packages): Add "build-essential".
(transform-sysname): Add aliases for openssl, libxml2, and zlib.
Change-Id: Ia142ebc388dbcd47caf3b2c5165bc21227bc1832
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* guix/import/crate.scm (find-crate-version): Reuse
nonyanked-crate-versions, max-crate-version-of-semver.
Change-Id: I976a3b5a397f0d6a7d723804a98356544bfc7da3
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* guix/import/crate.scm (min-element, max-crate-version-of-semver,
nonyanked-crate-versions): New procedures.
(import-release)[version]: Update to the requested version or the newest
semver-compatible version.
Co-authored by David Elsing <david.elsing@posteo.net>
Change-Id: I72b081147c4eb9faf482f159b7145aaaf9f91f29
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The default value of #f led to ("..." . #f) being passed further down as an
entry point. That is not an issue for command line invocation, since in that
code path '() was already used as a default value, but it broke docker system
test with the following error:
building /gnu/store/dll8jj6h5pfgf6ya9skk1g1546smwbib-docker-pack.tar.gz.drv...
tar: Removing leading `/' from member names
Backtrace:
6 (primitive-load "/gnu/store/g8hqzccfvn4mkm41jqs65c27gs7?")
In ./guix/docker.scm:
268:6 5 (build-docker-image "/gnu/store/zi2f5dfdrhviinm6jxp3cj?" ?)
In ice-9/ports.scm:
433:17 4 (call-with-output-file _ _ #:binary _ #:encoding _)
476:4 3 (_ _)
In ./guix/docker.scm:
270:21 2 (_)
123:40 1 (config "1996ead589ab366473d935c4d5bd0c38b998f3b299847?" ?)
In unknown file:
0 (list->vector ("/gnu/store/1pvqd30qi1aigjdf7s7l8v7?" . #))
ERROR: In procedure list->vector:
In procedure vector: Wrong type argument in position 1: ("/gnu/store/1pvqd30qi1aigjdf7s7l8v7wpvrrhfkj-profile/bin/guile" . #f)
note: keeping build directory `/tmp/guix-build-docker-pack.tar.gz.drv-16'
builder for `/gnu/store/dll8jj6h5pfgf6ya9skk1g1546smwbib-docker-pack.tar.gz.drv' failed with exit code 1
build of /gnu/store/dll8jj6h5pfgf6ya9skk1g1546smwbib-docker-pack.tar.gz.drv failed
View build log at '/var/log/guix/drvs/dl/l8jj6h5pfgf6ya9skk1g1546smwbib-docker-pack.tar.gz.drv.gz'.
cannot build derivation `/gnu/store/dq9qk1ba0f07572m8ck3xws28x1b3rif-docker-test.drv': 1 dependencies couldn't be built
guix build: error: build of `/gnu/store/dq9qk1ba0f07572m8ck3xws28x1b3rif-docker-test.drv' failed
make: *** [Makefile:7044: check-system] Error 1
Breakage was introduced in 7d5168a2af3ed922c6a46985124fb73402cc8844.
* guix/scripts/pack.scm (docker-image)[entry-point-argument]: Default to '().
Change-Id: If5fc1f8bcb0981df11409636e71f2ca91b05612f
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guix/scripts/size.scm (guix-size): Parameterize %current-system.
Change-Id: Ia0c1ebff4397aa211f73360925f7c688d59b515a
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
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* doc/guix.texi (Invoking guix import): Mention '--allow-yanked'.
* guix/import/crate.scm (make-crate-sexp): Add yanked? argument. For
yanked packages, use the full version suffixed by "-yanked" for
generated variable names and add a comment and package property.
(crate->guix-package): Add allow-yanked? argument and if it is set to #t,
allow importing yanked crates if no other version matching the
requirements exists.
[find-package-version]: Packages previously marked as yanked are only
included if allow-yanked? is #t and then take the lowest priority.
[find-crate-version]: If allow-yanked? is #t, also consider yanked
versions with the lowest priority.
[dependency-name+version]: Rename to ...
[dependency-name+version+yanked] ...this. Honor allow-yanked? and choose
between an existing package and an upstream package. Exit with an error
message if no version fulfilling the requirement is found.
[version*]: Exit with an error message if the crate version is not found.
(cargo-recursive-import): Add allow-yanked? argument.
* guix/read-print.scm: Export <comment>.
* guix/scripts/import/crate.scm: Add "--allow-yanked".
* tests/crate.scm: Add test 'crate-recursive-import-only-yanked-available'.
[sort-map-dependencies]: Adjust accordingly.
[remove-yanked-info]: New variable.
Adjust test 'crate-recursive-import-honors-existing-packages'.
(test-bar-dependencies): Add yanked dev-dependencies.
(test-leaf-bob-crate): Add yanked versions.
(rust-leaf-bob-3.0.2-yanked): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
Change-Id: I175d89b39774e6b57dcd1f05bf68718d23866bb7
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If --recursive-dev-dependencies is specified, development dependencies
are also included for all recursively imported packages.
* doc/guix.texi (Invoking guix import): Mention --recursive-dev-dependencies.
* guix/import/crate.scm (crate-recursive-import): Add
recursive-dev-dependencies? argument.
* guix/scripts/import/crate.scm (show-help, guix-import-crate): Add
"--recursive-dev-dependencies".
* tests/crate.scm: Test both #f and #t for #:recursive-dev-dependencies?
in the 'cargo-recursive-import' test.
(test-root-dependencies): Add intermediate-c as dev-dependency.
(test-intermediate-c-crate, test-intermediate-c-dependencies): New
variables.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
Change-Id: Iae89794681155d77f128733120e60f03bc297717
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* guix/import/crate.scm (crate-recursive-import): Apply memoize outside the
lambda passed to recursive-import in order to actually use the memoization.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* guix/scripts/system.scm (show-help, %docker-format-options, %options,
%default-options, show-docker-format-options,
show-docker-format-options/detailed, process-action): Handle '--max-layers'
option.
* gnu/system/image.scm (system-docker-image): Same.
* gnu/image.scm (<image>)[max-layers]: New record field.
Change-Id: I2726655aefd6688b976057fd5a38e9972ebfc292
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* guix/scripts/pack.scm (docker-image, guix-pack, %default-options,
%docker-format-options, show-docker-format-options/detailed): Handle
'--max-layers' option.
* doc/guix.texi (Invoking guix pack): Document this.
Change-Id: I90660b2421fcdde891f003469fe2e2edaac7da41
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* guix/docker.scm (%docker-image-max-layers): New variable.
(size-sorted-store-items, create-empty-tar): New procedures.
(config, manifest, build-docker-image): Build layered images.
Change-Id: I4c8846bff0a3ceccb77e6bdf95d4942e5c3efe41
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* guix/scripts/pack.scm:
(entry-point-argument-spec-option-parser): New procedure.
(docker-image, %default-options, %docker-format-options,
show-docker-format-options/detailed, %options, show-docker-format-options,
guix-pack): Handle '--entry-point-argument' option.
* doc/guix.texi: (Invoking guix pack): Document this
Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
Change-Id: I1124feff6af39dcc63c85fd6cc7ad50f398489dc
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* guix/build/zig-build-system.scm (zig-cross-build): New function
(lower): Add cross-compilation support
* guix/build-system/zig.scm (build): Add --target flag with target input
(check): Disable with cross compilation
Change-Id: I5f42ff897bfe00c92c6576900221a15ef210d669
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* guix/ui.scm (show-version-and-exit): Change year to 2024.
Change-Id: I00fc2754da2b93d8b595a35aacdff087124df706
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* guix/utils.scm (target-x32?): New procedure.
Change-Id: Ia16c7edce64de01d5ccb126c7bd9a6736f327b5f
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add entry for
x86_64-linux-gnux32.
* gnu/packages/gcc.scm (gcc-configure-flags-for-triplet): Add
configure-flag for x86_64-linux-gnux32.
* guix/platforms/x86.scm (x86_64-linux-gnux32): New variable.
* guix/utils.scm (gnu-triplet->nix-system): Force x86_64-linux-gnux32 to
output a different nix-system than x86_64-linux-gnu.
Change-Id: I519fea2f8357e4b9895ede05fe8a5e373e9b034a
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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This fixes a regression introduced in commit
e6223017d95bc615b2648f0798d9a3904d5b5f57 causing the selected input style to
be ignored.
* guix/import/cran.scm (format-inputs): New procedure.
(maybe-inputs): Use it.
Change-Id: I0d36f972fcb9888ed2be4ec9360bbcab13c25c5d
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* guix/import/cran.scm (invalid-packages): Add libR.
Change-Id: I1e06b44785051dfc4fb85ba06062aa8c8e003495
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* guix/scripts/download.scm (ensure-valid-store-file-name name): Fix
the docstring.
Change-Id: If3fe3a923f514bb69297b566e0642c5e80fe4648
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
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* guix/download.scm (%mirrors): Remove several vanished hosts and all
FTP URLs. Use HTTPS where supported. Add some new HTTPS mirrors.
Change-Id: Ie707e92ae65b8a3287d941e3e6ffb84592417b95
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* guix/download.scm (%mirrors): Update one mirror URL and remove 2 dead
ones.
Change-Id: Ibdc03f0b7df94b73bb5be0fda5a6244b017e747e
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* guix/download.scm (%mirrors): Remove 2 dead mirror URLs.
Change-Id: I7f0e15ab5499df26fdf0b1702f8bea73c8ec8230
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* guix/deprecation.scm (define-deprecated/public): Fix docstring.
Change-Id: I895b1a86654b2756a9f98e858c622e8e7a6e2c27
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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Fixes <https://issues.guix.gnu.org/67175>.
* guix/least-authority.scm (least-authority-wrapper): Add #:user
and #:group.
[code]: Add calls to ‘setgid’ and ‘setuid’ when appropriate.
Change-Id: I2aad8e5686b42b5c92fc306b114c5c60cb8bc551
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* guix/gexp.scm (lower-reference-graphs)[tuple->gexp-input]: Add
‘gexp-input?’ case.
(gexp->derivation): Update docstring.
* doc/guix.texi (G-Expressions): Adjust accordingly.
* tests/gexp.scm ("references-file, non-default output"): New test.
Reviewed-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Change-Id: I595cb75da0867ab8ab44552887dc06ed1d23315e
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* guix/gexp.scm (gexp-input-compiler): New procedure.
* tests/gexp.scm ("gexp references non-existent output")
("gexp-input, as first-class input"): New tests.
* doc/guix.texi (G-Expressions): Document it.
Reviewed-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Change-Id: I95b58d6e4d77a54364026b4324fbb00125a9402e
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