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2018-06-14deduplicate: Fix a couple of thinkos.Ludovic Courtès
* guix/store/deduplication.scm (get-temp-link): Turn 'args' in the 'catch' handler into a rest argument. (deduplicate): Use 'lstat' instead of 'file-is-directory?' to properly handle symlinks. When iterating over the result of 'scandir', exclude the ".links" sub-directory. * tests/store-deduplication.scm ("deduplicate"): Create sub-directories and call 'deduplicate' directly on STORE.
2018-06-14database: 'register-path' creates the database directory if needed.Ludovic Courtès
* guix/store/database.scm (register-path): Call 'mkdir-p'.
2018-06-14database: Provide a way to specify the schema location.Ludovic Courtès
* guix/store/database.scm (sqlite-register): Add #:schema. Parameterize 'sql-schema' based on this. (register-path): Add #:schema and pass it to 'sqlite-register'.
2018-06-14store-copy: 'read-reference-graph' returns a list of records.Ludovic Courtès
The previous implementation of 'read-reference-graph' was good enough for many use cases, but it discarded the graph structure, which is useful information in some cases. * guix/build/store-copy.scm (<store-info>): New record type. (read-reference-graph): Rewrite to return a list of <store-info>. (closure-size, populate-store): Adjust accordingly. * gnu/services/base.scm (references-file): Adjust accordingly. * gnu/system/vm.scm (system-docker-image): Likewise. * guix/scripts/pack.scm (squashfs-image, docker-image): Likewise. * tests/gexp.scm ("gexp->derivation #:references-graphs"): Likewise.
2018-06-14database: Fail registration when encountering unregistered references.Ludovic Courtès
* guix/store/database.scm (add-reference-sql): Remove nested SELECT. (add-references): Expect REFERENCES to be a list of ids. (sqlite-register): Call 'path-id' for each of REFERENCES and pass it to 'add-references'. * tests/store-database.scm ("register-path with unregistered references"): New test.
2018-06-14database: 'with-database' can now initialize new databases.Ludovic Courtès
* nix/libstore/schema.sql: Rename to... * guix/store/schema.sql: ... this. * Makefile.am (nobase_dist_guilemodule_DATA): Add it. * nix/local.mk (%D%/libstore/schema.sql.hh): Adjust accordingly. * guix/store/database.scm (sql-schema): New variable. (sqlite-exec, initialize-database, call-with-database): New procedures. (with-database): Rewrite in terms of 'call-with-database'. * tests/store-database.scm ("new database"): New test. * guix/self.scm (compiled-guix)[*core-modules*]: Add 'schema.sql' to #:extra-files.
2018-06-13pull: Add '--list-generations'.Ludovic Courtès
* guix/scripts/pull.scm (show-help, %options): Add '--list-generations'. (display-profile-content, process-query): New procedures. (guix-pull): Honor '--list-generations'.
2018-06-12import: utils: Import more dependencies.Oleg Pykhalov
* guix/import/utils.scm (recursive-import): Import more dependencies.
2018-06-12substitute: Make progress message shorter.Ludovic Courtès
* guix/scripts/substitute.scm (fetch-narinfos)[update-progress!]: Shorten progress message so it fits on 80 columns.
2018-06-12substitute: Erase the current line when reporting progress.Ludovic Courtès
* guix/scripts/substitute.scm (fetch-narinfos)[update-progress!]: Use the ANSI erase-current-line sequence next to \r.
2018-06-11offload: Honor the build timeout internally.Ludovic Courtès
* guix/scripts/offload.scm (call-with-timeout): New procedure. (with-timeout): New macro. (process-request): Use it around 'transfer-and-offload' call.
2018-06-10import: json: Consolidate duplicate json-fetch functionality.Jelle Licht
* guix/import/json.scm (json-fetch): Return a list or hash table. (json-fetch-alist): New procedure. * guix/import/github.scm (json-fetch*): Remove. (latest-released-version): Use json-fetch. * guix/import/cpan.scm (module->dist-name): Use json-fetch-alist. (cpan-fetch): Likewise. * guix/import/crate.scm (crate-fetch): Likewise. * guix/import/gem.scm (rubygems-fetch): Likewise. * guix/import/pypi.scm (pypi-fetch): Likewise. * guix/import/stackage.scm (stackage-lts-info-fetch): Likewise.
2018-06-09pull: Record the URL, branch, and commit as a manifest entry property.Ludovic Courtès
* guix/scripts/pull.scm (derivation->manifest-entry): Turn COMMIT into a keyword parameter; add #:url and #:branch. Add a 'source' property to the manifest entry. (build-and-install): Add #:url and #:branch and pass it to 'derivation->manifest-entry'. (guix-pull): Adjust accordingly.
2018-06-09profiles: Add 'properties' field to manifest entries.Ludovic Courtès
* guix/profiles.scm (<manifest-entry>)[properties]: New field. (manifest->gexp)[entry->gexp]: Serialize it. (sexp->manifest)[sexp->manifest-entry]: Deserialize it.
2018-06-09packages: Add 'package-patched-vulnerabilities'.Ludovic Courtès
* guix/packages.scm (patch-file-name): New procedure. (%vulnerability-regexp): New variable. (package-patched-vulnerabilities): New procedure. * guix/scripts/lint.scm (patch-file-name): Remove. (check-vulnerabilities): Adjust to use 'package-patched-vulnerabilities'. * tests/packages.scm ("package-patched-vulnerabilities"): New test.
2018-06-09profiles: Add '%current-profile', 'user-friendly-profile', & co.Ludovic Courtès
* guix/scripts/package.scm (%user-profile-directory) (%profile-directory, %current-profile, canonicalize-profile) (user-friendly-profile): Move to... * guix/profiles.scm: ... here.
2018-06-09ui: Avoid #:select'ing bindings introduced in the latest (guix build utils).Ludovic Courtès
This should allow 'guix pull' to complete even when invoked from a Guix that predates commit 5d669883ecc104403c5d3ba7d172e9c02234577c. * guix/ui.scm: Use #:hide instead of #:select. This is a followup to 5d669883ecc104403c5d3ba7d172e9c02234577c.
2018-06-09self: Build the Info manual.Ludovic Courtès
* guix/self.scm (info-manual): New procedure. (whole-package): Add #:info and honor it. (compiled-guix): Pass #:info.
2018-06-09self: Compute and use locale data.Ludovic Courtès
* guix/self.scm (sub-directory, locale-data): New procedures. (guix-command): Add SOURCE parameter. Call 'locale-data' when SOURCE is true and use it in staged 'bindtextdomain' calls. (whole-package): Add #:command and honor it. (compiled-guix): Pass #:command to 'whole-package'.
2018-06-09pull: Install the new Guix in a profile.Ludovic Courtès
* guix/scripts/pull.scm (%pull-version): New variable. (build-from-source): Pass #:pull-version to BUILD. (whole-package-for-legacy, derivation->manifest-entry): New procedure. (build-and-install): Rewrite in terms of 'build-and-use-profile'. * guix/scripts/system.scm (maybe-suggest-running-guix-pull)[latest]: Switch to "/current". * scripts/guix.in (augment-load-paths!): Remove use of ~/.config/guix/latest. * build-aux/compile-as-derivation.scm: Replace "/guix/latest/" with "/current/share/guile/site/X.Y" * guix/scripts.scm (warn-about-old-distro)[age]: Check "/current" instead of "/latest". * doc/guix.texi (Invoking guix pull): Document it. * doc/contributing.texi (Running Guix Before It Is Installed): Remove footnote about abusing ~/.config/guix/latest.
2018-06-09self: Produce a complete package with the 'guix' command.Ludovic Courtès
* guix/self.scm (guix-command): New procedure. (compiled-guix): Add #:pull-version parameter. [command, package]: New variables. Honor PULL-VERSION. (guix-derivation): Add #:pull-version and pass it to 'compiled-guix'. * build-aux/build-self.scm (build-program): Add #:pull-version parameter. Pass it to 'guix-derivation'. (build): Add #:pull-version and pass it to 'build-program'. * build-aux/compile-as-derivation.scm: Pass #:pull-version to BUILD.
2018-06-08import: elpa: Remove unused (gnu packages) module.Oleg Pykhalov
* guix/import/elpa.scm: Remove unused (gnu packages) module.
2018-06-08config: Remove 'canonicalize-path' call.Ludovic Courtès
The call was unnecessary and would cause test failures because 'test-tmp/db' does not exist initially. * guix/config.scm.in (%store-database-directory): Remove 'canonicalize-path' call.
2018-06-08import: elpa: Add recursive import.Oleg Pykhalov
* doc/guix.texi (Invoking guix import): Document elpa recursive import. * guix/import/elpa.scm (elpa-package->sexp): Return package and dependencies values. (elpa-guix-name, elpa-recursive-import): New procedures. * guix/scripts/import/elpa.scm (show-help, %options): Add recursive option. (guix-import-elpa): Use 'elpa-recursive-import'.
2018-06-08import: utils: Add recursive-import.Oleg Pykhalov
* guix/import/cran.scm (cran-guix-name, cran-recursive-import): New procedures. (recursive-import): Remove procedure. * guix/import/utils.scm (guix-name, recursive-import): New procedures. * guix/scripts/import/cran.scm (guix-import-cran): Use 'cran-recursive-import' procedure.
2018-06-05Merge branch 'master' into core-updatesRicardo Wurmus
2018-06-05build-system/r: Update to Bioconductor 3.7.Ricardo Wurmus
This is a follow-up to 41f17554d88795bf35fbfc3e05301a6d2f64cca0. * guix/build-system/r.scm (bioconductor-uri): Update to version 3.7.
2018-06-03Merge branch 'master' into core-updatesMark H Weaver
2018-06-02self: Do not build (guix man-db).Ludovic Courtès
* guix/self.scm (specification->package): Remove "guile-gdbm-ffi" and "guile2.0-gdbm-ffi". (compiled-guix)[guile-gdbm-ffi]: Remove. [dependencies]: Remove it. [*core-modules*]: Add "guix/man-db.scm" via #:extra-files. [*extra-modules*]: Exclude "guix/man-db.scm".
2018-06-02Merge branch 'master' into core-updatesRicardo Wurmus
2018-06-02import: cran: Update to Bioconductor 3.7.Ricardo Wurmus
* guix/import/cran.scm (%bioconductor-version): Update to 3.7.
2018-06-02self: Include gnu/build/* in the result.Ludovic Courtès
Previously, modules like gnu/build/cross-toolchain.scm or gnu/build/svg.scm were missing from the result. * guix/self.scm (compiled-guix)[*system-modules*]: Add gnu/build/* to #:extra-files. (imported-files)[same-target?]: New procedure. [build]: Call 'delete-duplicates' on FILES.
2018-06-02self: 'compiled-files' builds the given list of files.Ludovic Courtès
* guix/self.scm (compiled-files): Add 'module-files' parameter. [build]: 'process-directory' now honors MODULE-FILES instead of building any '.scm' file it sees. (scheme-node): Adjust accordingly.
2018-06-02self: Improve backtraces for 'imported-files'.Ludovic Courtès
* guix/self.scm (imported-files): Pass #:env-vars.
2018-06-01Merge branch 'master' into core-updatesLudovic Courtès
2018-06-01self: Show backtraces on more columns.Ludovic Courtès
* guix/self.scm (compiled-modules): Add "COLUMNS" to #:env-vars.
2018-06-01self: Add dependency on guile-gdbm-ffi.Ludovic Courtès
Fixes a regression introduced in 331ac4cc239727992329207ba428b3f26cae91d9 whereby "guile-gdbm-ffi" would now be mandatory. * guix/self.scm (specification->package): Add "guile-gdbm-ffi" and "guile2.0-gdbm-ffi". (compiled-guix)[guile-gdbm-ffi]: New variables. [dependencies]: Add it.
2018-06-01Add (guix store deduplication).Caleb Ristvedt
* guix/store/database.scm (register-path): Add #:deduplicate? and call 'deduplicate' when it's true. (counting-wrapper-port, nar-sha256): Move to... * guix/store/deduplication.scm: ... here. New file. * tests/store-deduplication.scm: New file. * Makefile.am (STORE_MODULES): Add deduplication.scm. (SCM_TESTS) [HAVE_GUILE_SQLITE3]: Add store-deduplication.scm. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01database: 'register-path' resets timestamps.Ludovic Courtès
* guix/store/database.scm (reset-timestamps): New procedure. (register-path): Use it.
2018-06-01Add (gnu store database).Caleb Ristvedt
* guix/config.scm.in (%store-database-directory): New variable. * guix/store/database.scm: New file. * tests/store-database.scm: New file. * Makefile.am (STORE_MODULES): New variable. (MODULES, MODULES_NOT_COMPILED): Adjust accordingly. (SCM_TESTS) [HAVE_GUILE_SQLITE3]: Add tests/store-database.scm. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01build: Check for Guile-SQLite3.Ludovic Courtès
* m4/guix.m4 (GUIX_CHECK_GUILE_SQLITE3): New macro. * configure.ac: Use it and define 'HAVE_GUILE_SQLITE3'. * guix/self.scm (specification->package): Add "guile-sqlite3". (compiled-guix)[guile-sqlite3]: New variable. [dependencies]: Add it.
2018-06-01profiles: Use 'with-extensions'.Ludovic Courtès
* guix/profiles.scm (manual-database)[build]: Use 'with-extensions'. Remove 'add-to-load-path' call. * guix/man-db.scm: Use (gdbm) the normal way; remove 'module-autoload!' call.
2018-06-01pack: Use 'with-extensions' when referring to (guix docker).Ludovic Courtès
* guix/docker.scm: Use module (json) the normal way. * guix/scripts/pack.scm (docker-image)[build]: Wrap in 'with-extensions'.
2018-06-01gexp: Add 'with-extensions'.Ludovic Courtès
* guix/gexp.scm (<gexp>)[extensions]: New field. (gexp-attribute): New procedure. (gexp-modules): Write in terms of 'gexp-attribute'. (gexp-extensions): New procedure. (gexp->derivation): Add #:effective-version. [extension-flags]: New procedure. Honor extensions of EXP. (current-imported-extensions): New syntax parameter. (with-extensions): New macro. (gexp): Honor CURRENT-IMPORTED-EXTENSIONS. (compiled-modules): Add #:extensions and honor it. (load-path-expression): Likewise. (gexp->script, gexp->file): Honor extensions. * tests/gexp.scm (%extension-package): New variable. ("gexp-extensions & ungexp") ("gexp-extensions & ungexp-splicing") ("gexp-extensions and literal Scheme object") ("gexp->derivation & with-extensions") ("program-file & with-extensions"): New tests. * doc/guix.texi (G-Expressions): Document 'with-extensions'.
2018-06-01gexp: 'compiled-modules' no longer overrides (guix build utils).Ludovic Courtès
Until now 'compiled-modules' would override (guix build utils) with its own. Thus, when asked to build a different (guix build utils), via #:module-path, it would fail badly because a (guix build utils) module was already loaded and possibly incompatible with the new one. This happened when running 'guix pull --branch=core-updates' from current master: in 'core-updates', (guix build utils) exports 'ignore-error?' but in 'master' it does not. Thus, 'guix pull' would fail with: no binding `invoke-error?' in module (guix build utils) builder for `/gnu/store/…-module-import-compiled.drv' failed with exit code 1 cannot build derivation `/gnu/store/…-compute-guix-derivation.drv': 1 dependencies couldn't be built This patch fixes it. * guix/gexp.scm (compiled-modules)[build-utils-hack?]: New variable. [build]: Load MODULES/build/utils.scm when it exists.
2018-06-01scripts: system: Sort profile generations in reverse order.Mathieu Othacehe
* guix/scripts/system.scm (profile-boot-parameters): Reverse generation-numbers list. This allows old generations to be listed from most recent to oldest in bootloaders configuration files.
2018-05-31records: Make a couple of procedures available at expansion time.Ludovic Courtès
* guix/records.scm (current-abi-identifier, abi-check): Wrap in 'eval-when'.
2018-05-31self: Reduce the set of dependencies.Ludovic Courtès
By mistake we were adding more dependencies than needed to the Scheme derivations. * guix/self.scm (compiled-guix)[dependencies]: Use 'package-transitive-propagated-inputs', not 'package-transitive-inputs'.
2018-05-31build-system/r: Use invoke.Ricardo Wurmus
* guix/build/r-build-system.scm (invoke-r): Use invoke. (pipe-to-r): Raise invoke-error on non-zero return value. (check): Unconditionally return #t.
2018-05-29Merge branch 'master' into core-updatesRicardo Wurmus
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