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2020-06-30lint: Adjust 'swh-error exception handler.Ludovic Courtès
* guix/lint.scm (check-archival): Change first clause to match only 'swh-error keys.
2020-06-30swh: Adjust for Guile-JSON 4.0 null handling.Ludovic Courtès
* guix/swh.scm (string*): Add clause for 'null.
2020-06-30pack: Dereference symlinks when looking for executables.Ludovic Courtès
Fixes <https://bugs.gnu.org/42127>. Reported by Andrius Štikonas <andrius@stikonas.eu>. * guix/scripts/pack.scm (wrapped-package)[build]: Add trailing slash to the arguments to 'find-files'.
2020-06-30build-system/r: bioconductor-uri: Fix archive URL.zimoun
* guix/build-system/r.scm (bioconductor-uri): Fix archive URL. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-28Add more missing (ice-9 format) imports.Marius Bakke
* gnu/machine/ssh.scm: Import (ice-9 format). * guix/scripts/graph.scm: Likewise. * guix/scripts/system/search.scm: Likewise. * guix/remote.scm: Likewise.
2020-06-28channels: Error out when the 'guix' channel lacks an introduction.Ludovic Courtès
* guix/channels.scm (latest-channel-instance): Raise an error instead of warning when 'guix is unauthenticated. * tests/channels.scm ("latest-channel-instances, missing introduction for 'guix'"): New test.
2020-06-28processes: Write to $PAGER.Ludovic Courtès
* guix/ui.scm (with-paginated-output-port): Export. * guix/scripts/processes.scm (guix-processes): Use it instead of writing directly to (current-output-port).
2020-06-27packages: Recognize SHA3 and BLAKE2s for 'content-hash'.Ludovic Courtès
* guix/packages.scm (build-content-hash): Add 'sha3-256', 'sha3-512', and 'blake2s-256'. * tests/packages.scm ("package-source-derivation, origin, sha3-512"): New test.
2020-06-26store: Use '=' instead of 'eqv?'.Ludovic Courtès
Fixes <https://bugs.gnu.org/42047>. Reported by Jan Nieuwenhuizen <janneke@gnu.org>. * guix/store.scm (open-connection): Use '=' instead of 'eqv?'. This works around <https://bugs.gnu.org/42060> while also being more accurate since the arguments are known to be integers.
2020-06-26challenge: Fix option indentation in '--help' output.Ludovic Courtès
* guix/scripts/challenge.scm (show-help): Indent '--verbose' and '--diff' correctly (high tech!).
2020-06-26Add more (ice-9 format) imports.Ludovic Courtès
* guix/scripts/describe.scm: Add missing (ice-9 format). * guix/scripts/system.scm: Likewise.
2020-06-25deduplication: Leave the store permissions unchanged.Ludovic Courtès
Suggested by Caleb Ristvedt <caleb.ristvedt@cune.org>. * guix/store/deduplication.scm (call-with-writable-file): Call THUNK directly when FILE is (%store-directory).
2020-06-25deduplication: Fix default value of #:store in 'deduplicate'.Ludovic Courtès
* guix/store/deduplication.scm (deduplicate): Change #:store default value to (%store-directory).
2020-06-25deduplication: Use 'dynamic-wind' when changing permissions of the parent.Ludovic Courtès
Suggested by Caleb Ristvedt <caleb.ristvedt@cune.org>. * guix/store/deduplication.scm (call-with-writable-file): New procedure. (with-writable-file): New macro. (replace-with-link): Use it.
2020-06-23openpgp: Use Libgcrypt's crc24 implementation.Ludovic Courtès
This gives an 18% speedup on the wall-clock time of: guile -c '(use-modules (git) (guix git-authenticate)) (load-keyring-from-reference (repository-open ".") "keyring")' * guix/openpgp.scm (crc24): Rewrite by calling out to 'bytevector-hash'.
2020-06-23self: Parallelize translation of the manual.Ludovic Courtès
The guix-translated-texinfo.drv execution time goes from 1mn42s with 1 core to 1mn8s with 4 cores. * guix/self.scm (translate-texi-manuals)[build]: Use 'n-par-for-each' instead of 'for-each' for translation.
2020-06-23self: Move statements after definitions in translation derivation.Ludovic Courtès
* guix/self.scm (translate-texi-manuals)[build]: Move statements after definitions.
2020-06-23po: Micro-optimize 'read-po-file'.Ludovic Courtès
* guix/build/po.scm (parse-tree->assoc): Use dot instead of ellipsis in 'match' clause to avoid repeated calls to 'list?'.
2020-06-23po: Avoid regexps when interpreting '\n' sequences.Ludovic Courtès
This reduces the execution time of: (call-with-input-file "po/doc/guix-manual.de.po" read-po-file) from 4.7s to 4.0s. * guix/build/po.scm (interpret-newline-escape): New procedure. (parse-tree->assoc): Use it instead of 'regexp-substitute/global'.
2020-06-23self: Speed up Texinfo cross-reference translation.Ludovic Courtès
Building guix-translated-texinfo.drv goes from 11mn to 1mn50s, most of which is taken by po4a. * guix/self.scm (translate-texi-manuals)[build](make-ref-regex): Remove. (canonicalize-whitespace): New procedure. (xref-regexp): New variable. (translate-cross-references): Rewrite to iterate over the cross-references rather than iterating over the msgids. Update caller.
2020-06-22deduplicate: Avoid traversing directories twice.Ludovic Courtès
Until now, we'd call (nar-sha256 file) unconditionally. Thus, if FILE was a directory, we would traverse it for no reason, and then call 'deduplicate' on FILE, which would again traverse it. This change also removes redundant (mkdir-p store) calls from the loop, and avoids 'lstat' calls by using 'scandir*'. * guix/store/deduplication.scm (deduplicate): Add named loop. Move 'mkdir-p' outside the loop. Use 'scandir*' instead of 'scandir'. Do not call 'nar-sha256' when FILE has type 'directory.
2020-06-22compile: Build gnu/{packages,tests}/* with '-O1'.Ludovic Courtès
* guix/build/compile.scm (optimization-options): Use '-O1' for the simple case.
2020-06-21channels: 'authenticate-channel' doesn't check relation with intro commit.Ludovic Courtès
Fixes <https://bugs.gnu.org/41908>. Reported by Jan Nieuwenhuizen <janneke@gnu.org>. The relation check imposed an extra restriction that was unnecessary: it's enough to authenticate the set difference between the closure of START-COMMIT and that of END-COMMIT. Any attempt to jump to an unrelated commit would lead to the authentication failure of one commit on the way. * guix/channels.scm (authenticate-channel): Remove extra 'commit-relation' check when (null? commits).
2020-06-21git-authenticate: Ignore authenticated commit cache when it's not #o600.Ludovic Courtès
* guix/git-authenticate.scm (previously-authenticated-commits): Stat PORT; return the empty list if it's no #o600 and change it to #o600.
2020-06-20build-system/gnu: Cross builds properly handle #:allowed-references & co.Ludovic Courtès
Fixes <https://bugs.gnu.org/41775>. * guix/build-system/gnu.scm (gnu-cross-build)[canonicalize-reference]: Pass TARGET and SYSTEM to 'package-cross-derivation'.
2020-06-20tests: Actually run 'tests/guix-environment-container.sh'.Ludovic Courtès
This test was skipped since the switch to Guile 3 because 'assert-container-features' would be inlined and thus accessing it with @@ would fail with an unbound-variable error. * guix/scripts/environment.scm (assert-container-features): Export. * tests/guix-environment-container.sh: Use single '@'.
2020-06-18build-system/asdf: Add support for component-less systems.Pierre Neidhardt
* guix/build/lisp-utils.scm (make-asd-file): Ensure lib directory exists and check if prebuilt bundle system was generated. (generate-system-definition): Add :class and :components only if prebuilt system was generated.
2020-06-18profiles: 'linux-module-database' hooks gracefully handles module-less kernels.Ludovic Courtès
Fixes <https://bugs.gnu.org/41924>. * guix/profiles.scm (linux-module-database)[build]: Arrange so 'directory-entries' always returns a list. Add 'match' clause for the empty list. Co-authored-by: Ivan Kozlov <kanichos@yandex.ru>
2020-06-18profiles: Reindent 'linux-module-database'.Ludovic Courtès
* guix/profiles.scm (linux-module-database): Reindent.
2020-06-18nar: Use (guix i18n).Ludovic Courtès
* guix/nar.scm: Use (guix i18n) instead of (guix ui).
2020-06-18nar: Avoid opening the database an additional time.Ludovic Courtès
* guix/nar.scm (finalize-store-file): Call 'register-items' and pass it DB. This avoids opening the database a second time and hopefully reduces contention on 'db.sqlite-shm'.
2020-06-18database: 'register-items' takes an open database.Ludovic Courtès
* guix/store/database.scm (store-database-directory) (store-database-file): New procedures. (call-with-database): Add call to 'mkdir-p'. (register-items): Add 'db' parameter and remove #:state-directory and #:schema. (register-path): Use 'store-database-file' and 'with-database', and parameterize SQL-SCHEMA. * gnu/build/image.scm (register-closure): Likewise. * gnu/build/vm.scm (register-closure): Likewise. * guix/scripts/pack.scm (store-database)[build]: Likewise.
2020-06-18build-system/gnu: Fix 'install' phase of 'gnu-dist'.Ludovic Courtès
* guix/build/gnu-dist.scm (install-dist): Fix 2nd argument to 'for-each'.
2020-06-18repl: Fix typo that would lead ~/.guile to be used when running scripts.Ludovic Courtès
This is a followup to c924e541390f9595d819edc33c19d979917c15ec. * guix/scripts/repl.scm (guix-repl)[opts]: Set 'ignore-dot-guile?', with question mark.
2020-06-17channels: Warn when pulling from a mirror.Ludovic Courtès
* guix/channels.scm (<channel-metadata>)[url]: New field. (read-channel-metadata): Initialize it. (read-channel-metadata-from-source): Likewise. (channel-instance-primary-url): New procedure. (latest-channel-instances): Compare CHANNEL's URL against it. * doc/guix.texi (Channels)[Primary URL]: New subsection.
2020-06-17build-system/gnu: Rename "make dist" phase to 'build-dist'.Ludovic Courtès
* guix/build/gnu-dist.scm (%dist-phases): Add BUILD under the name 'build-dist'.
2020-06-17build-system/gnu: Simplify 'dist-package'.Ludovic Courtès
* guix/build-system/gnu.scm (dist-package): Use default keyword arguments in 'substitute-keyword-arguments'.
2020-06-17build-system/gnu: Remove redundant 'unpack' phase from 'gnu-dist'.Ludovic Courtès
This has become redundant with the standard 'unpack' phase since 17919a58012c38052133ed029450fdb98d01fb5c. * guix/build/gnu-dist.scm (copy-source): Remove. (%dist-phases): Remove 'unpack' phase.
2020-06-17build-system/gnu: Remove Hydra-specific code from 'gnu-dist'.Ludovic Courtès
* guix/build/gnu-dist.scm (install-dist): Remove code for 'hydra-build-products'.
2020-06-17build-system/gnu: Remove 'autoreconf' phase from 'gnu-dist'.Ludovic Courtès
This has been superseded by the 'bootstrap' phase added in 189be331acfda1c242a9c85fca8d2a0356742f48. * guix/build/gnu-dist.scm (autoreconf): Remove. (%dist-phases): Remove it.
2020-06-17build-system/gnu: Adjust 'dist-package' to current 'autoconf-wrapper' API.Ludovic Courtès
This is a followup to 464f5447396fcec9b43f7eab71d5d42b522a157f. * guix/build-system/gnu.scm (dist-package): Do not call 'autoconf-wrapper'.
2020-06-17profiles: Add comment at the top of 'manifest' file.Ludovic Courtès
* guix/build/profiles.scm (build-profile): Add comment at the top of MANIFEST-FILE.
2020-06-16time-machine: Add '--disable-authentication'.Ludovic Courtès
* guix/inferior.scm (cached-channel-instance): Add #:authenticate? and pass it to 'latest-channel-instances'. * guix/scripts/time-machine.scm (show-help, %options): Add '--disable-authentication'. (%default-options): Add 'authenticate-channels?'. (guix-time-machine): Honor it.
2020-06-16pull: Add '--disable-authentication'.Ludovic Courtès
* guix/channels.scm (latest-channel-instance): Add #:authenticate? and honor it. (latest-channel-instances): Likewise. * guix/scripts/pull.scm (%default-options): Add 'authenticate-channels?'. (show-help, %options): Add '--disable-authentication'. (guix-pull): Pass #:authenticate? to 'latest-channel-instances'. * doc/guix.texi (Invoking guix pull): Document it.
2020-06-16channels: Automatically add introduction for the official 'guix' channel.Ludovic Courtès
This is useful when people run "guix time-machine -C channels.scm", where 'channels.scm' misses channel introductions. * guix/channels.scm (%default-channel-url): New variable. (%default-channels): Use it. (ensure-default-introduction): New procedure. (latest-channel-instance): Call it.
2020-06-16channels: Make 'validate-pull' call right after clone/pull.Ludovic Courtès
This should come before patching, authentication, etc. * guix/channels.scm (latest-channel-instance): Add #:validate-pull parameter and honor it. Return a single value: the instance. (ensure-forward-channel-update): Change 'instance' parameter to 'commit' and adjust accordingly. (latest-channel-instances): Adjust to 'latest-channel-instance' changes. * guix/scripts/pull.scm (warn-about-backward-updates): Change 'instance' parameter to 'commit' and adjust accordingly. * tests/channels.scm ("latest-channel-instances #:validate-pull"): Likewise.
2020-06-16channels: 'latest-channel-instance' authenticates Git checkouts.Ludovic Courtès
Fixes <https://bugs.gnu.org/22883>. * guix/channels.scm (<channel>)[introduction]: New field. (<channel-introduction>): New record type. (%guix-channel-introduction): New variable. (%default-channels): Use it. (<channel-metadata>)[keyring-reference]: New field. (%default-keyring-reference): New variable. (read-channel-metadata, read-channel-metadata-from-source): Initialize the 'keyring-reference' field. (commit-short-id, verify-introductory-commit) (authenticate-channel): New procedures. (latest-channel-instance): Call 'authenticate-channel' when CHANNEL has an introduction. * tests/channels.scm (gpg+git-available?, commit-id-string): New procedures. ("authenticate-channel, wrong first commit signer"): ("authenticate-channel, .guix-authorizations"): New tests. * doc/guix.texi (Invoking guix pull): Mention authentication.
2020-06-16tests: Move OpenPGP helpers to (guix tests gnupg).Ludovic Courtès
* tests/git-authenticate.scm (key-id): Remove. (%ed25519-public-key-file, %ed25519-secret-key-file) (%ed25519bis-public-key-file, %ed25519bis-secret-key-file) (read-openpgp-packet, key-fingerprint): Move to... * guix/tests/gnupg.scm: ... here.
2020-06-16git-authenticate: 'authenticate-commits' takes a #:keyring parameter.Ludovic Courtès
* guix/git-authenticate.scm (authenticate-commits): Add #:keyring parameter.
2020-06-16git-authenticate: Cache takes a key parameter.Ludovic Courtès
* guix/git-authenticate.scm (authenticated-commit-cache-file) (cache-authenticated-commit, previously-authenticated-commits): Add 'key' parameter and honor it. * build-aux/git-authenticate.scm (git-authenticate): Pass "channels/guix" as the key.