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2022-11-26licenses: Add EUPL 1.1.Antero Mejr
* guix/licenses.scm (eupl1.1): New variable. Signed-off-by: Lars-Dominik Braun <lars@6xq.net>
2022-11-24guix: Upgrade to Bioconductor 3.16.zimoun
* guix/build-system/r.scm (bioconductor-uri): Bump Bioconductor version to 3.16. * guix/import/cran.scm (%bioconductor-version): Same.
2022-11-23offload: Increase default 'overload-threshold' value.Ludovic Courtès
When offloading to a single machine, the previous default value would lead 'guix offload' to wait possibly for several minutes between subsequent builds until normalized load would finally go below 0.6. Increasing it mitigates that. * guix/scripts/offload.scm (<build-machine>)[overload-threshold]: Bump to 0.8. * doc/guix.texi (Daemon Offload Setup): Likewise.
2022-11-22reconfigure: Use SRFI-71 instead of SRFI-11.Ludovic Courtès
* guix/scripts/system/reconfigure.scm (upgrade-shepherd-services) (channel-relations): Use SRFI-71.
2022-11-22offload: Gracefully handle 'guix repl' protocol errors.Ludovic Courtès
Fixes <https://issues.guix.gnu.org/59447>. Reported by Mathieu Othacehe <othacehe@gnu.org>. Previously, if a machine had a buggy 'guix repl', 'guix offload' would crash with a backtrace instead of just ignoring the machine. * guix/scripts/offload.scm (remote-inferior*): New procedure. (check-machine-availability)[if-true]: New procedure. Use 'remote-inferior*' and 'if-true'. (check-machine-status): Use 'remote-inferior*'.
2022-11-22inferior: Raise '&inferior-protocol-error' on invalid response.Ludovic Courtès
* guix/inferior.scm (&inferior-protocol-error): New condition type. (read-repl-response): Add default 'match' clause and raise it.
2022-11-21guix: modify-input: Recommend prepend instead of append.Vivien Kraus
* doc/guix.texi (Defining Package Variants): Document the "prepend" clause of modify-inputs first. * guix/packages.scm (modify-inputs): use "prepend" in the docstring. Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-11-20style: '-f' reads input files as UTF-8 by default.Ludovic Courtès
Reported by mirai on #guix. * guix/scripts/style.scm (format-whole-file): Wrap body in 'with-fluids'. Pass #:guess-encoding to 'call-with-input-file'.
2022-11-20file-systems: Always do recursive bind mounts.Ricardo Wurmus
Fixes <https://issues.guix.gnu.org/59185>. * guix/build/syscalls.scm (MS_REC): New variable. * gnu/build/file-systems.scm (mount-flags->bit-mask): Set MS_REC bit when bind-mounting.
2022-11-20scripts: Use translations for guix.pot for service descriptions.pelzflorian (Florian Pelz)
Previously, service descriptions appeared in both guix.pot and packages.pot, but only translations of packages.pot were used. Now, translations are only done with guix.pot. This is better, because translators are more likely to translate guix.pot, and is also easier, because files in gnu/{home/,}services need to be in po/guix/POTFILES.in anyway and po/guix/Makevars already acts on the 'description' keyword because of lint checkers. * guix/scripts/home.scm (service-type-description-string): Use translations from guix.pot. * guix/scripts/system/search.scm (service-type-description-string) (service-type->recutils): Likewise. * po/packages/POTFILES.in: Move files in gnu/services to ... * po/guix/POTFILES.in: ... here.
2022-11-20import: egg: Fix typo in docstring.jgart
* gnu/import/egg.scm (Commentary): Fix typo in Commentary docstring. Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-11-19scripts: describe: Add branch information to recutils output.jgart
* guix/scripts/describe.scm (channel->recutils): Add branch information. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-11-19scripts: describe: Add branch information to json output.jgart
* guix/scripts/describe.scm (channel->json): Add branch information. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-11-19pack: Remove use of GOOPS in 'deb' backend.Ludovic Courtès
* guix/scripts/pack.scm (debian-archive)[build]: Remove use of (oop goops). Introduce 'keyword-ref' and use it instead of 'get-keyword'.
2022-11-18import/utils: spdx-string->license: Support '+' operator.Philip McGrath
Previously, '+' was supported only via special cases for deprecated GNU identifiers like 'GPL-N+'. This commit adds support for other uses of '+', such as 'AFL-2.0+' and 'LPPL-1.0+'. Strictly speaking, '+' is an operator, not part of the SPDX license identifier, but it is useful to handle it here. * guix/import/utils.scm (spdx-string->license): Support '+' operator. * tests/import-utils.scm ("spdx-string->license"): Test it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-11-18import/utils: spdx-string->license: Match case-insensitively.Philip McGrath
SPDX specifies that license identifiers (unlike the 'AND', 'OR', and 'WITH' operators) are matched case-insensitively. * guix/import/utils.scm (%spdx-license-identifiers): New variable. (spdx-string->license): Search in '%spdx-license-identifiers' using 'string-ci=?'. * tests/import-utils.scm ("spdx-string->license"): New test. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-11-18import/utils: spdx-string->license: Fix incorrect docstring.Philip McGrath
The result of 'spdx-string->license' is a symbol, not a license object. * guix/import/utils.scm (spdx-string->license): Fix docstring. (license->symbol): Mention 'license:' prefix in docstring. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-11-13guix: Replace defective freemirror.org.Tobias Geerinckx-Rice
This ‘mirror’ is particularly problematic because it's the only one checked by ‘guix refresh’. * guix/gnu-maintenance.scm (%savannah-base): Substitute freedif.org. * guix/download.scm (%mirrors): Likewise. Reported by sash-kan on #guix.
2022-11-16import/cran: Add package mapping for freetype.Ricardo Wurmus
* guix/import/cran.scm (transform-sysname): Map "freetype2" to "freetype".
2022-11-15shell: Detect --symlink spec problems early.Maxim Cournoyer
* guix/scripts/pack.scm (symlink-spec-option-parser): Remove extraneous char-set. Raise an exception when the target is an absolute file name. (guix-pack): Move with-error-handler earlier. * guix/scripts/shell.scm (guix-shell): Likewise. * guix/scripts/environment.scm (guix-environment): Wrap the whole guix-environment* call with the with-error-handling handler. * tests/guix-environment-container.sh: Add tests. * tests/guix-pack.sh: Adjust symlink spec.
2022-11-15guix: shell: Add '--symlink' option.Maxim Cournoyer
* guix/scripts/pack.scm (%options): Extract symlink parsing logic to... (symlink-spec-option-parser): ... here. (self-contained-tarball/builder): Add a comment mentioning why a relative file name is used for the link target. * guix/scripts/environment.scm (show-environment-options-help): Document new --symlink option. (%default-options): Add default value for symlinks. (%options): Register new symlink option. (launch-environment/container): Add #:symlinks argument and extend doc, and create symlinks using evaluate-populate-directive. (guix-environment*): Pass symlinks arguments to launch-environment/container. * doc/guix.texi (Invoking guix shell): Document it. * tests/guix-shell.sh: Add a --symlink (negative) test. * tests/guix-environment-container.sh: Add tests.
2022-11-14self: Mark the generation (guix config) as non-declarative.Ludovic Courtès
Fixes <https://issues.guix.gnu.org/58927>. Reported by Maxime Devos <maximedevos@telenet.be> and Marius Bakke <marius@gnu.org>. Starting from 076e825dc5d585943ce820a279fffe4af09757fb, "guix --version" would print "0" as the version number, due to '%guix-version' being inlined in (guix ui) when compiling '*core-modules*' in (guix self). * guix/self.scm (make-config.scm): Pass #:declarative? #f.
2022-11-11gnu-maintenance: 'release-file?' excludes "valgrind-3.20.0.RC1.tar.bz2".Ludovic Courtès
* guix/gnu-maintenance.scm (%alpha-tarball-rx): Add "." before "(alpha|beta|...)". * tests/gnu-maintenance.scm ("release-file?"): Add test for Valgrind.
2022-11-11gnu-maintenance: 'gnu' updater prefers tarball with same compression.Ludovic Courtès
Fixes <https://issues.guix.gnu.org/59168>. Previously 'guix build make --with-latest=make' would pick ".tar.lz", rather than "tar.gz", because "tar.lz" happened to come first in the <upstream-source> 'urls' field. * guix/gnu-maintenance.scm (latest-gnu-release)[archive-type] [better-tarball?]: New variables. Sort TARBALLS according to BETTER-TARBALL?.
2022-11-11upstream: Factorize 'package-archive-type'.Ludovic Courtès
* guix/upstream.scm (package-archive-type): New procedure. (package-update/url-fetch): Use it.
2022-11-11grafts: Run with a UTF-8 locale.Ludovic Courtès
Fixes <https://issues.guix.gnu.org/55968>. Reported by Maxime Devos <maximedevos@telenet.be>. * guix/grafts.scm (%graft-with-utf8-locale?): New parameter. (graft-derivation/shallow)[glibc-locales, set-utf8-locale]: New variables. [build]: Use 'set-utf8-locale'. * tests/gexp.scm, tests/grafts.scm, tests/packages.scm: Set '%graft-with-utf8-locale?' to #f.
2022-11-11build-system/dub: Avoid usage of (guix build syscalls).Marius Bakke
* guix/build/dub-build-system.scm (configure): Use MKDTEMP instead of MKDTEMP!.
2022-11-11build-system/clojure: Avoid usage of (guix build sycalls).Marius Bakke
* guix/build/clojure-build-system.scm (reset-class-timestamps): Use MKDTEMP from Guile core instead of MKDTEMP!.
2022-11-11build-system/ant: Avoid usage of (guix build syscalls).Marius Bakke
* guix/build/ant-build-system.scm (strip-jar-timestamps): Use MKDTEMP from Guile core rather than MKDTEMP!. * guix/build/java-utils.scm (install-jar-file-with-pom): Likewise.
2022-11-11import/cran: Add package name mapping for "booktabs".Ricardo Wurmus
* guix/import/cran.scm (transform-sysname): Add mapping for "booktabs".
2022-11-11import/cran: Add more strings to the list of invalid packages.Ricardo Wurmus
* guix/import/cran.scm (invalid-packages): Add "c++", "c++17", and "posix.1-2001" to list of invalid packages.
2022-11-10gnu: Add go-github-com-creack-pty.(unmatched-parenthesis
* gnu/packages/golang.scm (go-github-com-creack-pty): New variable. * guix/build-system/go.scm (go-target): Add to exported variables. Signed-off-by: Raghav Gururajan <rg@raghavgururajan.name>
2022-11-08build-system/gnu: Turn #:phases into a gexp when cross-compiling.Ludovic Courtès
Previously, we'd get this error: $ guix build --target=aarch64-linux-gnu r-minimal -d --no-grafts guix build: error: path ‘/gnu/store/[^-]+-glibc-[^-]+-static’ is not valid This is because the sexp would be passed as an input of the surrounding gexp in 'gnu-cross-build', and thus "/gnu/store/[^-]+-glibc-[^-]+-static" would be interpreted as a source file name, as in this example: scheme@(guix gexp)> #~(foo #$(list 'whatever "/gnu/store/[^-]+-glibc-[^-]+-static")) $11 = #<gexp (foo #<gexp-input (whatever "/gnu/store/[^-]+-glibc-[^-]+-static"):out>) 7f098badec30> scheme@(guix gexp)> (gexp-inputs $11) $12 = (#<gexp-input "/gnu/store/[^-]+-glibc-[^-]+-static":out>) Fixes <https://issues.guix.gnu.org/59073>. Reported by Christopher Baines <mail@cbaines.net>. * guix/build-system/gnu.scm (gnu-cross-build): When PHASES is a pair, pass it through 'sexp->gexp'.
2022-11-07build-system/linux-module: Add #:source-directory to linux-module-build-cross.Christopher Baines
Otherwise computing cross-compilation derivations for packages (e.g. xpadneo) using the #:source-directory argument fails with this error: Unrecognized keyword: #:source-directory * guix/build-system/linux-module.scm (linux-module-build-cross): Support #:source-directory.
2022-11-06guix gc: Add '--vacuum-database'.Efraim Flashner
* guix/scripts/gc.scm (show-help, %options): Add '--vacuum-database'. * guix/store/database.scm (vacuum-database): New procedure. * doc/guix.texi (Invoking guix gc): Document the option.
2022-11-06shell: Fix '--emulate-fhs' sometimes not including 'glibc-for-fhs'.John Kehayias
Fixes <https://issues.guix.gnu.org/58861>. Previously the order of the options giving to 'guix shell' could mean that the 'glibc-for-fhs' package included with the '--emulate-fhs' option would not appear in the container. For example, using the development option with a package using the 'gnu-build-system', e.g. 'guix shell -CFD hello', would include the regular 'glibc' package. The option ordered mattered: 'guix shell -CD hello -F' would include the expected 'glibc-for-fhs'. We fix this by having 'glibc-for-fhs' added to the package list just before calling 'options-with-caching' so the option order given by the user does not matter. * guix/scripts/shell.scm (%options): Move the '--emulate-fhs' (expression . ...) component from here... (parse-args): ... to here. * tests/guix-environment-container.sh: Add a test to check that 'glibc-for-fhs' is in the container even when 'glibc' is included in the 'guix shell' package list. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-11-05guix: ui: Add default synopsis for “doc” output.Liliana Marie Prikler
* guix/ui.scm (package->recutils)[%default-output-synopses]: Add “doc”.
2022-11-05guix: ui: Improve missing output descriptions.Liliana Marie Prikler
The current reference to Intel's Appendix H appears too obscure and confusing. * guix/ui.scm (package->recutils)[output->recutils]: Replace “see Appendix H” with “[description missing]”.
2022-11-05guix: ui: Handle single outputs.Liliana Marie Prikler
The current code says "out" contains "everything else", even if there's no other output to contain anything. * guix/ui.scm (package->recutils)[default-output-synopses]: New variable. [output->recutils]: Take default synopses as argument. ["outputs"]: Distinguish single and multiple outputs.
2022-11-03build-system/scons: Allow using a G-exp for scons-flags.Timotej Lazar
* guix/build-system/scons.scm (scons-build): Only call sexp->gexp on scons-flags when scons-flags is a pair. Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-10-27profiles: info-dir-file: Remove install-info '--silent' option.Maxim Cournoyer
Relates to <https://issues.guix.gnu.org/58821>. Revert 4fef1e850e4872f2bc7c1f0a10cbac176b50895f, which silenced useful information such as the following warning: install-info: warning: no info dir entry in `/gnu/store/...-rottlog-0.72.2/share/info/rottlog.info.gz' Rationale: profile hooks output is now hidden by default, and can be made visible via the --verbosity option.
2022-10-27build-system/pyproject: Always run tests verbosely for supported backends.Marius Bakke
* guix/build-system/pyproject.scm (pyproject-build): Default to '() instead of #false for TEST-FLAGS. * guix/build/pyproject-build-system.scm (check): Unconditionally enable verbose test flags. * doc/guix.texi (Build Systems): Document this change. * gnu/packages/fontutils.scm (python-glyphslib)[arguments]: Remove verbosity from #:test-flags. * gnu/packages/pdf.scm (python-pydyf, weasyprint)[arguments]: Likewise. * gnu/packages/python-web.scm (python-openapi-spec-validator)[arguments]: Likewise. * gnu/packages/python-xyz.scm (python-path, python-tempora)[arguments]: Likewise.
2022-10-27build-system/pyproject: Adjust indentation.Marius Bakke
* guix/build/pyproject-build-system.scm: Adjust indentation.
2022-10-27build-system: Add pyproject-build-system.Lars-Dominik Braun
This is an experimental build system based on python-build-system that implements PEP 517-compliant builds. * doc/guix.texi (Build Systems): Add pyproject-build-system section. * doc/contributing.texi (Python Modules): Mention pyproject.toml and the PYTHON-TOOLCHAIN package, as well as differences to python-build-system. * guix/build-system/pyproject.scm, guix/build/pyproject-build-system.scm, gnu/packages/aux-files/python/sanity-check-next.py, gnu/packages/python-commencement.scm: New files. * Makefile.am (MODULES): Register the new build systems. * gnu/local.mk (GNU_SYSTEM_MODULES): Add python-commencement.scm. * gnu/packages/python.scm (python-sans-pip, python-sans-pip-wrapper): New variables. Co-authored-by: Marius Bakke <marius@gnu.org>
2022-10-25Merge remote-tracking branch 'origin/master' into stagingEfraim Flashner
2022-10-20build-system/cargo: Unpack crates less verbosely.Efraim Flashner
* guix/build/cargo-build-system.scm (configure): Print the crate being unpacked but don't print the contents of each crate.
2022-10-22grafts: Rewrite using gexps.Ludovic Courtès
Fixes <https://issues.guix.gnu.org/58419>. * guix/grafts.scm (graft-derivation/shallow): Rewrite using gexps and remove 'store' parameter. (graft-derivation/shallow*): New variable. (cumulative-grafts): Use it instead of 'graft-derivation/shallow'.
2022-10-22Remove now unnecessary uses of (guix grafts).Ludovic Courtès
These modules would use (guix grafts) just to access '%graft?' and related bindings, which are now in (guix store). * gnu/ci.scm, guix/gexp.scm, guix/lint.scm, guix/scripts.scm, guix/scripts/archive.scm, guix/scripts/build.scm, guix/scripts/challenge.scm, guix/scripts/deploy.scm, guix/scripts/environment.scm, guix/scripts/home.scm, guix/scripts/pack.scm, guix/scripts/package.scm, guix/scripts/pull.scm, guix/scripts/size.scm, guix/scripts/system.scm, guix/scripts/weather.scm, tests/builders.scm, tests/channels.scm, tests/cpan.scm, tests/derivations.scm, tests/gexp.scm, tests/graph.scm, tests/guix-daemon.sh, tests/monads.scm, tests/pack.scm, tests/packages.scm, tests/profiles.scm, tests/system.scm: Remove #:use-module (guix grafts).
2022-10-22grafts: Move '%graft?' and related bindings to (guix store).Ludovic Courtès
The goal is to allow (guix grafts) to use (guix gexp) without introducing a cycle between these two modules. * guix/grafts.scm (%graft?, call-without-grafting, without-grafting) (set-grafting, grafting?): Move to... * guix/store.scm: ... here.
2022-10-22build-system/python: Disable grafts.Ludovic Courtès
This is consistent with what 'gnu-build' does and makes sure origins aren't getting lowered with #:graft? #t in one case and not in the other. This is a followup to df46bef48eaa43c502fa9193371692c039b460c1 and dada5e86ed58c1869e30678c4d69582b1528ed6c. * guix/build-system/python.scm (python-build): Pass #:graft? #f.
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