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2021-11-20build: syscalls: Add a SET-CHILD-SUBREAPER! procedure.Maxim Cournoyer
* guix/build/syscalls.scm (PR_SET_CHILD_SUBREAPER): New variable. (set-child-subreaper!): New procedure.
2021-11-18derivations: Officially deprecate 'build-expression->derivation'.Ludovic Courtès
This procedure had been semi-deprecated since 2014, starting with commit 21b679f6944f4e1f09f949322f5242b761dc22a7! * guix/derivations.scm (build-expression->derivation): Define using 'define-deprecated'.
2021-11-18build-system/go: Update cross-compilation support to new interface.Ludovic Courtès
* guix/build-system/go.scm (go-cross-build): Remove 'store', 'native-drvs' and 'target-drvs'; add 'source', 'build-inputs', 'target-inputs', and 'host-inputs'. Change default value of #:phases. [builder]: Rewrite as a gexp. Rewrite body to call 'gexp->derivation' instead of 'build-expression->derivation'.
2021-11-17Merge branch 'master' into core-updates-frozenLudovic Courtès
2021-11-16daemon: Do not deduplicate files smaller than 8 KiB.Ludovic Courtès
Files smaller than 8 KiB typically represent ~70% of the entries in /gnu/store/.links but only contribute to ~4% of the space savings afforded by deduplication. Not considering these files for deduplication speeds up file insertion in the store and, more importantly, leaves 'removeUnusedLinks' with fewer entries to traverse, thereby speeding it up proportionally. Partly fixes <https://issues.guix.gnu.org/24937>. * config-daemon.ac: Remove symlink hard link check and CAN_LINK_SYMLINK definition. * guix/store/deduplication.scm (%deduplication-minimum-size): New variable. (deduplicate)[loop]: Do not recurse when FILE's size is below %DEDUPLICATION-MINIMUM-SIZE. (dump-port): New procedure. (dump-file/deduplicate)[hash]: Turn into... [dump-and-compute-hash]: ... this thunk. Call 'deduplicate' only when SIZE is greater than %DEDUPLICATION-MINIMUM-SIZE; otherwise call 'dump-port'. * nix/libstore/gc.cc (LocalStore::removeUnusedLinks): Drop files where st.st_size < deduplicationMinSize. * nix/libstore/local-store.hh (deduplicationMinSize): New declaration. * nix/libstore/optimise-store.cc (deduplicationMinSize): New variable. (LocalStore::optimisePath_): Return when PATH is a symlink or smaller than 'deduplicationMinSize'. * tests/derivations.scm ("identical files are deduplicated"): Produce files bigger than %DEDUPLICATION-MINIMUM-SIZE. * tests/nar.scm ("restore-file-set with directories (signed, valid)"): Likewise. * tests/store-deduplication.scm ("deduplicate, below %deduplication-minimum-size"): New test. ("deduplicate", "deduplicate, ENOSPC"): Produce files bigger than %DEDUPLICATION-MINIMUM-SIZE. * tests/store.scm ("substitute, deduplication"): Likewise.
2021-11-16tests: Factorize 'file=?'.Ludovic Courtès
* guix/tests.scm (file=?): Add optional 'stat' parameter. Add fast patch comparing inode numbers. * tests/gexp.scm ("imported-files with file-like objects"): Remove 'file=?' procedure and use the one from (guix tests).
2021-11-16build-system/julia: Enable Julia Pkg to find installed packages.Jean-Baptiste Volatier
Julia's built-in package manager (Pkg) looks for packages in JULIA_DEPOT_PATH/packages/PACKAGENAME/XXXX, where XXXX is a string encoding package UUID and SHA1 of files. The link-depot phase creates a link at the correct location to allow Pkg to find packages that were already installed by Guix. * guix/build/julia-build-system.scm (link-depot): New phase. (%package-path): Modified package path from packages/ to loadpath/. (project.toml->uuid): New procedure, retrive package uuid from TOML file. (precompile, check): Adjust to the change in paths. (%standard-phases): Add link-depot phase. (julia-build): Add julia-package-uuid keyword. * guix/build-system/julia.scm (julia-build): Also use the julia-package-uuid keyword. * gnu/packages/julia-jll.scm (julia-bzip2-jll, julia-cairo-jll, julia-compilersupportlibraries-jll, julia-expat-jll, julia-ffmpeg-jll, julia-fontconfig-jll, julia-freetype2-jll, julia-fribidi-jll, julia-gettext-jll, julia-glib-jll, julia-gr-jll, julia-gumbo-jll, julia-imagemagick-jll, julia-jllwrappers-jll, julia-jpegturbo-jll, julia-lame-jll, julia-libass-jll, julia-libfdk-aac-jll, julia-libffi-jll, julia-libgcrypt-jll, julia-libglvnd-jll, julia-libgpg-error-jll, juli-libiconv-jll, julia-libmount-jll, julia-libpng-jll, julia-libsass-jll, julia-libtiff-jll, julia-libuuid-jll, julia-libvorbis-jll, julia-lzo-jll, julia-mbedtls-jll, julia-ogg-jll, julia-openspecfun-jll, julia-openssl-jll, julia-opus-jll, julia-pcre-jll, julia-pixman-jll, julia-qt5base-jll, julia-wayland-jll, julia-wayland-protocols-jll, julia-x264-jll, julia-x265-jll, julia-xkbcommon-jll, julia-xml2-jll, julia-xorg-libpthread-stubs-jll, julia-xorg-libx11-jll, julia-xorg-libxau-jll, julia-xorg-libxcb-jll, julia-xorg-libxcursor-jll, julia-xorg-libxdmcp-jll, julia-xorg-libxext-jll, julia-xorg-libxfixes-jll, julia-xorg-libxi-jll, julia-xorg-libxinerama-jll, julia-xorg-libxkbfile-jll, julia-xorg-libxrandr-jll, julia-xorg-libxrender-jll, julia-xorg-xcb-util-jll, julia-xorg-xcb-util-keysyms-jll, julia-xorg-xcb-util-renderutil-jll, julia-xorg-xcb-util-wm-jll, julia-xorg-xkbcomp-jll, julia-xorg-xkeyboard-config-jll, julia-xorg-xtrans-jll, julia-xslt-jll, julia-zlib-jll, julia-zstd-jll) [argument]: Adjust the order of the phases to the change in the julia-build-system. * gnu/packages/julia-xyz.scm (julia-bufferedstreams, julia-calculus, julia-dataframes, julia-datavalues, julia-distances, julia-documenter, julia-dualnumbers, julia-ellipsisnotation, julia-expronicon, julia-fileio, julia-fixedpointnumbers, julia-functionwrappers, julia-fuzzycompletions, julia-genericlinearalgebra, julia-genericschur, julia-geometrybasics, julia-imagemagick, julia-infinity, julia-matrixfactorizations, julia-media, julia-missings, julia-nnlib, julia-optimtestproblems, julia-orderedcollections, julia-prettytables, julia-pycall, julia-quadmath, julia-safetests, julia-stackviews) [arguments]: Correct paths to reflect change of %package-path modify order of phases as link-depot needs to run on an unmodified src directory add package-name-uuid keyword argument to packages without Project.toml file. * gnu/packages/julia.scm (julia)[native-search-paths]: Correct paths to reflect change of %package-path modify order of phases as link-depot needs to run on an unmodified src directory. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-14build: wrap-qt-program: Fix typo.Vagrant Cascadian
* gnu/build/qt-utils.scm (wrap-qt-program): Fix spelling of "program".
2021-11-14environment: Fix ‘--check’ with exported PS1 variable.Thiago Jung Bauermann
If your .bashrc (unnecessarily) exports PS1 and you’re in a non-login shell, Guix crashes: user@popigai:~$ guix shell --check coreutils guix shell: checking the environment variables visible from shell '/bin/bash'... Backtrace: 14 (primitive-load "/home/user/.config/guix/current/bin/g…") In guix/ui.scm: 2206:7 13 (run-guix . _) 2169:10 12 (run-guix-command _ . _) In ice-9/boot-9.scm: 1752:10 11 (with-exception-handler _ _ #:unwind? _ # _) 1752:10 10 (with-exception-handler _ _ #:unwind? _ # _) In guix/store.scm: 658:37 9 (thunk) 1320:8 8 (call-with-build-handler _ _) 1320:8 7 (call-with-build-handler #<procedure 7fe393b7c420 at g…> …) In guix/status.scm: 800:4 6 (call-with-status-report _ _) In guix/scripts/environment.scm: 951:12 5 (_) In guix/store.scm: 2119:24 4 (run-with-store #<store-connection 256.99 7fe39627e500> …) In guix/scripts/environment.scm: 521:35 3 (_ _) In unknown file: 2 (string=? ("PS1" . "${debian_chroot:+($debian_chroot)…") …) In ice-9/boot-9.scm: 1685:16 1 (raise-exception _ #:continuable? _) 1685:16 0 (raise-exception _ #:continuable? _) ice-9/boot-9.scm:1685:16: In procedure raise-exception: In procedure string=: Wrong type argument in position 1 (expecting string): ("PS1" . "${debian_chroot:+($debian_chroot)}\\[\\033[01;32m\\]\\u@\\h\\[\\033[00m\\]:\\[\\033[01;34m\\]\\w\\[\\033[00m\\]${EXTRA}\\$ ") user@popigai:~$ This is because the match pattern doesn’t expect `(vhash-assoc "PS1" actual)` to return a pair. * guix/scripts/environment.scm (validate-child-shell-environment): Change match pattern to expect a pair. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-13guix: packages: Clarify that list is a list of <license> records.jgart
* guix/packages/packages.scm (<package>): Clarify that the license field takes a list of licenses rather than a generic list. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2021-11-12import: utils: Add more licenses and extend their detection.Attila Lendvai
* guix/import/utils.scm (spdx-string->license): Identify more licenses (CC-BY-4.0, Freetype, HPND). * guix/licenses.scm: Add a comment that mentions "MIT" so that people who grep for MIT end up there. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-11build: meson: Replace the 'test-target' argument by 'test-options'.Maxim Cournoyer
This change is motivated by the need to disable the default 30 seconds timeout that Meson uses (see: https://gitlab.gnome.org/GNOME/glib/-/issues/2522), and also by desire to specify extra options to run the check phase without having to override it. * guix/build-system/meson.scm (meson-build) <test-target>: Replace argument with... <test-options>: ... this one. * guix/build/meson-build-system.scm (check): Invoke 'meson test' instead of 'ninja test-target', as the former is configurable via options. * doc/guix.texi (Build Systems) <meson-build-system>: Update doc.
2021-11-11profiles: Add a gdk-pixbuf-loaders-cache-file hook.Maxim Cournoyer
This paves the way toward properly fixing https://issues.guix.gnu.org/50957. * guix/profiles.scm (gdk-pixbuf-loaders-cache-file): Add procedure... (%default-profile-hooks): ... and register it as a profile hook. * guix/status.scm (hook-message): Register it here too.
2021-11-11build: glib-or-gtk: Generate the gdk-pixbuf-loaders cache file in a phase.Maxim Cournoyer
Adding a profile hook to do so covers most use cases, but it is still necessary to have the gdk-pixbuf loaders cache file computed at build time, as software may expect to find loaders support at that time. * guix/build/glib-or-gtk-build-system.scm: Delete trailing #t. (%gdk-pixbuf-loaders-cache-file-prefix): New variable. (generate-gdk-pixbuf-loaders-cache): New procedure. (generate-gdk-pixbuf-loaders-cache-file): Add procedure... (%standard-phases): ... and register it as a build phase.
2021-11-11build: glib-or-gtk-build-system: Fix indentation.Maxim Cournoyer
* guix/build/glib-or-gtk-build-system.scm (gtk-module-directories) (wrap-all-programs): Fix indentation.
2021-11-11build: glib-or-gtk-build-system: Simplify the wrap-all-programs phase.Maxim Cournoyer
* guix/build/glib-or-gtk-build-system.scm (wrap-all-programs) <handle-output>: Precisely build the list of variable specifications, rather than relying on a bunch of conditionals.
2021-11-11guix: packages: Fix repacking of plain tarballs.Maxim Cournoyer
Fixes <https://issues.guix.gnu.org/50066>. * guix/packages.scm (patch-and-repack): Test for a tarball using tarball? and move the plain file copy to the else clause. Reported-by: Mathieu Othacehe <othacehe@gnu.org>
2021-11-11build: qt-utils: Don't wrap .X-real files.Brendan Tildesley
* guix/build/qt-utils.scm (find-files-to-wrap): Exclude already wrapped programs. This is forbidden in wrap-program now due to a738a663a99. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-11-11import: print: Replace packages and origins in 'arguments'.Ludovic Courtès
* guix/import/print.scm (package->code)[variable-reference] [object->code]: New procedures. [package-lists->code]: Rewrite in terms of 'object->code'. Pass the 'arguments' field through 'object->code'. * tests/print.scm (pkg-with-arguments, pkg-with-arguments-source): New variables. ("package with arguments"): New test.
2021-11-11import: print: Handle patches that are origins.Ludovic Courtès
* guix/import/print.scm (package->code)[source->code]: Handle patches that are origins. * tests/print.scm (pkg-with-origin-input): Add 'patches' field. (pkg-with-origin-patch, pkg-with-origin-patch-source): New variables. ("package with origin patch"): New test.
2021-11-11import: print: Correctly handle URI lists.Ludovic Courtès
* guix/import/print.scm (package->code)[factorized-uri-code]: New procedure. [source->code]: Use it, and factorize URI when it's a list. * tests/print.scm (pkg-with-origin-input): Check origin URI to a list.
2021-11-11import: print: Properly render packages with origins as inputs.Ludovic Courtès
* guix/import/print.scm (package->code)[source->code]: Check whether VERSION is true before calling 'factorize-uri'. [package-lists->code]: Add clause for inputs that are origins. * tests/print.scm (pkg-with-origin-input, pkg-with-origin-input-source): New variables. ("package with origin input"): New test.
2021-11-11import: cran: Allow imports of a specific version.Ludovic Courtès
* guix/import/cran.scm (download): Handle the case where URL is a list. (fetch-description-from-tarball): New procedure. (fetch-description): Add #:version parameter. Honor it when REPOSITORY is 'cran. Use 'fetch-description-from-tarball' when REPOSITORY is 'bioconductor. (description->package): SOURCE-URL may now be a list. (cran->guix-package): Pass VERSION to 'fetch-description'. (cran-recursive-import): Add #:version parameter. * guix/scripts/import/cran.scm (guix-import-cran): Expect a spec rather than a mere package name. * doc/guix.texi (Invoking guix import): Document it.
2021-11-11import: pypi: Allow imports of a specific version.Ludovic Courtès
* guix/import/pypi.scm (latest-version): New procedure. (latest-source-release): Rename to... (source-release): ... this. Add 'version' parameter. (latest-wheel-release): Rename to... (wheel-release): ... this. Add 'version' parameter. (pypi->guix-package): Honor 'version' parameter. (pypi-recursive-import): Add 'version' parameter and honor it. * guix/scripts/import/pypi.scm (guix-import-pypi): Expect a spec. Pass it to 'package-name->name+version'. Pass the 'version' parameter. * tests/pypi.scm ("pypi->guix-package, no wheel"): Exercise the #:version parameter. * doc/guix.texi (Invoking guix import): Document it.
2021-11-10store: 'mapm/accumulate-builds' does not compare stores with 'eq?'.Ludovic Courtès
Fixes <https://issues.guix.gnu.org/51732>. Regression introduced in 2015d3f042870860efef10e801b93eacc0742d38. The (eq? store expected-store) comparison doesn't work on this branch where the functional cache, with 'cache-object-mapping', is used extensively, thereby changing the store's object identity. * guix/store.scm (build-accumulator): Compare the socket of STORE and EXPECTED-STORE rather than the store themselves.
2021-11-08Merge remote-tracking branch 'origin/master' into core-updates-frozenEfraim Flashner
2021-11-07guix: Upgrade to Bioconductor 3.14.Ricardo Wurmus
* guix/build-system/r.scm (bioconductor-uri): Bump Bioconductor version to 3.14. * guix/import/cran.scm (%bioconductor-version): Same.
2021-11-07shell: Actually clean up the profile cache.Ludovic Courtès
Previously, most actions would leave the cache as-is because 'guix-environment*' would indirectly call 'exit', and thus its continuation was never reached. * guix/scripts/shell.scm (guix-shell): Move call to 'maybe-remove-expired-cache-entries' to EXIT-HOOK.
2021-11-07import: egg: Allow imports of a specific version.Xinglu Chen
* guix/import/egg.scm (eggs-repository): Change URL. (egg-metadata): Accept optional #:version keyword argument. (egg->guix-package): Accept ‘version’ argument. (egg-recursive-import): Add ‘version’ argument and honor it. * guix/scripts/import/egg.scm (guix-import-egg): Parse a specification instead of just a package name. * doc/guix.texi (Invoking guix import): Document it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-07home: services: bash: Add ‘aliases’ field.Xinglu Chen
* doc/guix.texi (Shells Home Services): Document it. * gnu/home/services/shells.scm (bash-serialize-aliases): New procedure. (home-bash-configuration, home-bash-extension): Add ‘aliases’ field. (home-bash-extensions): Adjust accordingly. * guix/scripts/home/import.scm (generate-bash-configuration+modules): Populate the ‘alias’ field. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-07ui: 'load*' correctly reports 'read-error' in all cases.Ludovic Courtès
Previously, 'read-error' exceptions other than "missing closing paren" would not be reported; instead, we'd directly call (exit 1) without printing anything. Fixes <https://issues.guix.gnu.org/51463>. Reported by Alice BRENON <alice.brenon@ens-lyon.fr>. * guix/ui.scm (report-load-error): Report the error without re-throwing upon 'read-error'. * tests/guix-build.sh: Add test.
2021-11-07utils: Define a target-x86-32? and target-x86-64? predicate.Maxime Devos
* guix/utils.scm (target-x86-32?, target-x86-64?): New predicates. * tests/utils.scm ("target-x86-32?", "target-x86-64?"): New tests. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-11-06environment: Suggest command upon 'execlp' failure.Ludovic Courtès
* guix/scripts/environment.scm (launch-environment): Call 'primitive-_exit' upon 'system-error. (suggest-command-name, validate-exit-status): New procedures. (launch-environment/fork): Call 'validate-exit-status'. (launch-environment/container)[exit/status*]: New procedure. Use it instead of 'exit/status'.
2021-11-06profiles: Build the man database only if 'man-db' is in the profile.Ludovic Courtès
This allows us to skip the expensive man-db profile hook in most cases. Suggested by Liliana Marie Prikler <liliana.prikler@gmail.com>. * guix/profiles.scm (manual-database/optional): New procedure. (%default-profile-hooks): Use it instead of 'manual-database'. * doc/guix.texi (Documentation): Add footnote about 'man -k' database creation.
2021-11-06import: elpa: Work around Guile 3.0.[5-7] compiler bug.Ludovic Courtès
Fixes <https://issues.guix.gnu.org/49006>. Reported by Xinglu Chen <public@yoctocell.xyz>. * guix/import/elpa.scm (elpa-package->sexp)[melpa-recipe]: Add call to 'identity'.
2021-11-03Merge remote-tracking branch 'origin/master' into core-updates-frozenEfraim Flashner
2021-11-02import: stackage: Update to release 18.14.Lars-Dominik Braun
* guix/import/stackage.scm (%default-lts-version): Update to 18.14.
2021-10-31Merge remote-tracking branch 'origin/master' into core-updates-frozenEfraim Flashner
2021-10-31ui: Use DISPLAY in SHOW-GUIX-HELP.Tobias Geerinckx-Rice
* guix/ui.scm (show-guix-help): Use DISPLAY where FORMAT isn't needed.
2021-10-31ui: Add top-level options to help text.Tobias Geerinckx-Rice
This also makes automated ‘guix --h<Tab>’ completion possible. * guix/ui.scm (show-guix-help): Document that an OPTION's an option, and all valid options.
2021-10-31home: import: Avoid duplication of 'manifest->code'.Ludovic Courtès
* guix/scripts/home/import.scm (manifest->code): Remove. (manifest+configuration-files->code): New procedure. (import-manifest): Use 'manifest+configuration-files->code' instead of 'manifest->code'. * tests/home-import.scm (eval-test-with-home-environment): Likewise. (match-home-environment-transformations): New procedure. ("manifest->code: No services, package transformations"): New test.
2021-10-31home: import: Factorize triplicated 'version-spec' procedure.Ludovic Courtès
* guix/scripts/package.scm (manifest-entry-version-prefix): New procedure, moved from... (export-manifest)[version-spec]: ... here. Adjust caller. * tests/home-import.scm (version-spec): Remove. (eval-test-with-home-environment): Use 'manifest-entry-version-prefix' instead. * guix/scripts/home/import.scm (import-manifest): Likewise.
2021-10-31home: import: Clarify "destination directory".Ludovic Courtès
Suggested by Liliana Marie Prikler <liliana.prikler@gmail.com>. * guix/scripts/home/import.scm (configurations+modules): Rename 'destination-directory' to 'configuration-directory'. Improve docstring.
2021-10-31home: import: Compare procedures with 'eq?'.Ludovic Courtès
'procedure-name' is a debugging aid and cannot be reliably used to check for procedure equality. * guix/scripts/home/import.scm (configurations+modules): Remove use of 'procedure-name'.
2021-10-31guix home: import: Call ‘local-file’ with ‘name’Xinglu Chen
Set the name of the file to just the basename of the file passed to ‘local-file’. * guix/scripts/home/import.scm (basename+remove-dots): New procedure. (generate-bash-configuration+modules): Use it. * tests/home-import.scm (match-home-environment-bash-service): Adjust accordingly. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-10-31Add tests for ‘guix home import’.Xinglu Chen
* tests/home-import.scm: New file. * Makefile.am (SCM_TESTS): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-10-31guix home: import: Delete duplicate modules when importing.Xinglu Chen
Two different services might require the same module(s), so delete duplicates when generating the ‘use-modules’ form. * import.scm (manifest->code): Delete duplicate modules. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-10-31guix home: import: Don’t use 'slurp-file-gexp'.Xinglu Chen
‘slurp-file-gexp’ is not a bound procedure. * guix/scripts/home/import.scm (generate-bash-configuration+modules): Don’t use ‘slurp-file-gexp’. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-10-31guix home: import: Fix module name for Bash service.Xinglu Chen
* guix/scripts/home/import.scm (generate-bash-configuration+modules): Change (gnu home-services bash) to (gnu home-services shells); add (guix gexp). Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-10-31guix home: import: Allow multiple modules to be imported for each service.Xinglu Chen
Previously, only one module could be imported for each service, e.g., only (gnu home-services shell) could be imported when generating the Bash service declaration. However, for some services, multiple modules might need to be imported in order for it to work. * guix/scripts/home/import.scm (generate-bash-module+configuration): Rename to ... (generate-bash-configuration+modules): ... this. (%files-configurations-alist): Rename to ... (%files+configurations-alist): ... this. (modules+configurations): Rename to ... (configurations+modules): ... this. (manifest->code): Adjust accordingly. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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