From f2580a13856705d30b6d979c9c51df9f5ceda783 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 4 Dec 2019 09:33:09 +0100 Subject: gnu: r-txdb-hsapiens-ucsc-hg19-knowngene: Use bioconductor-uri. * gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg19-knowngene)[source]: Use bioconductor-uri. [arguments]: Enable substitution. --- gnu/packages/bioconductor.scm | 11 ++--------- 1 file changed, 2 insertions(+), 9 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 9f79be3874..86d4735d2d 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -497,21 +497,14 @@ (define-public r-txdb-hsapiens-ucsc-hg19-knowngene (version "3.2.2") (source (origin (method url-fetch) - ;; We cannot use bioconductor-uri here because this tarball is - ;; located under "data/annotation/" instead of "bioc/". - (uri (string-append "https://bioconductor.org/packages/" - "release/data/annotation/src/contrib" - "/TxDb.Hsapiens.UCSC.hg19.knownGene_" - version ".tar.gz")) + (uri (bioconductor-uri "TxDb.Hsapiens.UCSC.hg19.knownGene" + version 'annotation)) (sha256 (base32 "1sajhcqqwazgz2lqbik7rd935i7kpnh08zxbp2ra10j72yqy4g86")))) (properties `((upstream-name . "TxDb.Hsapiens.UCSC.hg19.knownGene"))) (build-system r-build-system) - ;; As this package provides little more than a very large data file it - ;; doesn't make sense to build substitutes. - (arguments `(#:substitutable? #f)) (propagated-inputs `(("r-genomicfeatures" ,r-genomicfeatures))) (home-page -- cgit v1.2.3