From aa47077a8b40fa6a19f5e33bc618ce20e9bde6e0 Mon Sep 17 00:00:00 2001 From: Navid Afkhami Date: Thu, 24 Aug 2023 13:28:27 +0000 Subject: gnu: Add r-bumpymatrix. * gnu/packages/bioconductor.scm (r-bumpymatrix): New variable. Signed-off-by: Ricardo Wurmus --- gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) (limited to 'gnu/packages/bioconductor.scm') diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 8b4f88e708..1b62837bbc 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -12979,6 +12979,32 @@ to identify differentially methylated regions in epigenetic epidemiology studies.") (license license:artistic2.0))) +(define-public r-bumpymatrix + (package + (name "r-bumpymatrix") + (version "1.8.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "BumpyMatrix" version)) + (sha256 + (base32 + "021xn5d08phmwv6g8a5d4ap5kcf5syhm6vpr784l4k54lflssr5i")))) + (properties `((upstream-name . "BumpyMatrix"))) + (build-system r-build-system) + (propagated-inputs (list r-iranges r-matrix r-s4vectors)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/BumpyMatrix") + (synopsis "Bumpy matrix of non-scalar objects") + (description + "This package provides a class and subclasses for storing non-scalar +objects in matrix entries. This is akin to a ragged array but the raggedness +is in the third dimension, much like a bumpy surface--hence the name. Of +particular interest is the @code{BumpyDataFrameMatrix}, where each entry is a +Bioconductor data frame. This allows us to naturally represent multivariate +data in a format that is compatible with two-dimensional containers like the +@code{SummarizedExperiment} and @code{MultiAssayExperiment} objects.") + (license license:expat))) + (define-public r-mia (package (name "r-mia") -- cgit v1.2.3