From 9534e7b7061f672d4b8a0d4cafd3b1be7908a613 Mon Sep 17 00:00:00 2001 From: zimoun Date: Wed, 23 Dec 2020 19:06:29 +0100 Subject: gnu: r-gqtlstats: Move to (gnu packages bioconductor). * gnu/packages/bioinformatics.scm (r-gqtlstats): Move from here... * gnu/packages/bioconductor.scm (r-gqtlstats): ...to here. --- gnu/packages/bioinformatics.scm | 56 ----------------------------------------- 1 file changed, 56 deletions(-) (limited to 'gnu/packages/bioinformatics.scm') diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index caa505fdab..67b4c4cb73 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10729,62 +10729,6 @@ (define-public r-ldblock defining LD blocks.") (license license:artistic2.0))) -(define-public r-gqtlstats - (package - (name "r-gqtlstats") - (version "1.21.3") - (source - (origin - (method url-fetch) - (uri (bioconductor-uri "gQTLstats" version)) - (sha256 - (base32 - "1h78l23idf867djmdk97b02jxgmz4vfr2dai01fp648d0lsx5mkl")))) - (properties `((upstream-name . "gQTLstats"))) - (build-system r-build-system) - (propagated-inputs - `(("r-annotationdbi" ,r-annotationdbi) - ("r-batchjobs" ,r-batchjobs) - ("r-bbmisc" ,r-bbmisc) - ("r-beeswarm" ,r-beeswarm) - ("r-biobase" ,r-biobase) - ("r-biocgenerics" ,r-biocgenerics) - ("r-doparallel" ,r-doparallel) - ("r-dplyr" ,r-dplyr) - ("r-erma" ,r-erma) - ("r-ffbase" ,r-ffbase) - ("r-foreach" ,r-foreach) - ("r-genomeinfodb" ,r-genomeinfodb) - ("r-genomicfeatures" ,r-genomicfeatures) - ("r-genomicfiles" ,r-genomicfiles) - ("r-genomicranges" ,r-genomicranges) - ("r-ggbeeswarm" ,r-ggbeeswarm) - ("r-ggplot2" ,r-ggplot2) - ("r-gqtlbase" ,r-gqtlbase) - ("r-hardyweinberg" ,r-hardyweinberg) - ("r-homo-sapiens" ,r-homo-sapiens) - ("r-iranges" ,r-iranges) - ("r-limma" ,r-limma) - ("r-mgcv" ,r-mgcv) - ("r-plotly" ,r-plotly) - ("r-reshape2" ,r-reshape2) - ("r-s4vectors" ,r-s4vectors) - ("r-shiny" ,r-shiny) - ("r-snpstats" ,r-snpstats) - ("r-summarizedexperiment" ,r-summarizedexperiment) - ("r-variantannotation" ,r-variantannotation))) - (native-inputs - `(("r-knitr" ,r-knitr))) - (home-page "https://bioconductor.org/packages/gQTLstats") - (synopsis "Computationally efficient analysis for eQTL and allied studies") - (description - "This package provides tools for the computationally efficient analysis -of @dfn{quantitative trait loci} (QTL) data, including eQTL, mQTL, dsQTL, etc. -The software in this package aims to support refinements and functional -interpretation of members of a collection of association statistics on a -family of feature/genome hypotheses.") - (license license:artistic2.0))) - (define-public r-dropbead (let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247") (revision "2")) -- cgit v1.2.3