From 9b6cddd32dfcffac4cec28366f968cfcce021e1e Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Mon, 18 Jan 2021 10:39:51 +0200 Subject: gnu: Add ruby-bio-vcf. * gnu/packages/bioinformatics.scm (ruby-bio-vcf): New variable. --- gnu/packages/bioinformatics.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) (limited to 'gnu/packages/bioinformatics.scm') diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index c527111928..182e974efc 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7726,6 +7726,31 @@ (define-public bioruby ;; (LGPLv2.1+) and scripts in samples (which have GPL2 and GPL2+) (license (list license:ruby license:lgpl2.1+ license:gpl2+ )))) +(define-public ruby-bio-vcf + (package + (name "ruby-bio-vcf") + (version "0.9.5") + (source + (origin + (method url-fetch) + (uri (rubygems-uri "bio-vcf" version)) + (sha256 + (base32 + "1glw5pn9s8z13spxk6yyfqaz80n9lga67f33w35nkpq9dwi2vg6g")))) + (build-system ruby-build-system) + (native-inputs + `(("ruby-cucumber" ,ruby-cucumber))) + (synopsis "Smart VCF parser DSL") + (description + "Bio-vcf provides a @acronym{DSL, domain specific language} for processing +the VCF format. Record named fields can be queried with regular expressions. +Bio-vcf is a new generation VCF parser, filter and converter. Bio-vcf is not +only very fast for genome-wide (WGS) data, it also comes with a filtering, +evaluation and rewrite language and can output any type of textual data, +including VCF header and contents in RDF and JSON.") + (home-page "https://github.com/vcflib/bio-vcf") + (license license:expat))) + (define-public r-biocviews (package (name "r-biocviews") -- cgit v1.2.3