From 94ff31572d37e9e49813b2e1fddd323cde0103e4 Mon Sep 17 00:00:00 2001 From: Ben Woodcroft Date: Wed, 15 Jun 2016 12:21:20 +1000 Subject: gnu: Add khmer. * gnu/packages/bioinformatics.scm (khmer): New variable. * gnu/packages/patches/khmer-use-libraries.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. --- gnu/packages/patches/khmer-use-libraries.patch | 16 ++++++++++++++++ 1 file changed, 16 insertions(+) create mode 100644 gnu/packages/patches/khmer-use-libraries.patch (limited to 'gnu/packages/patches/khmer-use-libraries.patch') diff --git a/gnu/packages/patches/khmer-use-libraries.patch b/gnu/packages/patches/khmer-use-libraries.patch new file mode 100644 index 0000000000..47d163a99a --- /dev/null +++ b/gnu/packages/patches/khmer-use-libraries.patch @@ -0,0 +1,16 @@ +Change setup.cfg so that the bundled zlib and bzip2 are not used. This cannot +currently be achieved using "--library z,bz2" as instructed in the setup.py. + +diff --git a/setup.cfg b/setup.cfg +index c054092..080992e 100644 +--- a/setup.cfg ++++ b/setup.cfg +@@ -1,7 +1,7 @@ + [build_ext] + define = SEQAN_HAS_BZIP2,SEQAN_HAS_ZLIB + undef = NO_UNIQUE_RC +-# libraries = z,bz2 ++libraries = z,bz2 + ## if using system libraries + include-dirs = lib:third-party/zlib:third-party/bzip2:third-party/seqan/core/include:third-party/smhasher + # include-dirs = lib -- cgit v1.2.3