From 14fd16ff838505bce770d2dca75cbb048b9c8e91 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 14 Apr 2020 15:24:31 +0200 Subject: gnu: r-nlme: Update to 3.1-147. * gnu/packages/statistics.scm (r-nlme): Update to 3.1-147. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index e4ca4c68f4..5319dedc7d 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -590,13 +590,13 @@ (define-public r-matrix (define-public r-nlme (package (name "r-nlme") - (version "3.1-145") + (version "3.1-147") (source (origin (method url-fetch) (uri (cran-uri "nlme" version)) (sha256 - (base32 "1i9a3afdmn2ziks0imz0j09ay9n0zb9mhrymy9mg97vvlz5diwrh")))) + (base32 "1rqc3wy3lmy0wczsvsn8yszzsxhppfwg4iznb1j6ki2qawpdij7g")))) (build-system r-build-system) (propagated-inputs `(("r-lattice" ,r-lattice))) -- cgit v1.2.3 From e78c54e7c690432326f6a4ec9004a9fffc1eaca1 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 14 Apr 2020 15:24:55 +0200 Subject: gnu: r-survival: Update to 3.1-12. * gnu/packages/statistics.scm (r-survival): Update to 3.1-12. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 5319dedc7d..ec466a0b9f 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -693,14 +693,14 @@ (define-public r-spatial (define-public r-survival (package (name "r-survival") - (version "3.1-11") + (version "3.1-12") (source (origin (method url-fetch) (uri (cran-uri "survival" version)) (sha256 (base32 - "1fbhbm3bnpg1nmj37h1d76x813ggvwk0cp51ixmmgb3pz47i5xj4")))) + "07zj3gpwncw89hbiwjb6ih9axv5zwdqnbgz9yw9xzws6nrpdcbmn")))) (build-system r-build-system) (propagated-inputs `(("r-matrix" ,r-matrix))) -- cgit v1.2.3 From 3805ce3dba946667969ec57c863f8c0be2535c0c Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 14 Apr 2020 15:59:41 +0200 Subject: gnu: r-reshape2: Update to 1.4.4. * gnu/packages/statistics.scm (r-reshape2): Update to 1.4.4. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index ec466a0b9f..2333bb0537 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -1066,13 +1066,13 @@ (define-public r-stringr (define-public r-reshape2 (package (name "r-reshape2") - (version "1.4.3") + (version "1.4.4") (source (origin (method url-fetch) (uri (cran-uri "reshape2" version)) (sha256 - (base32 "03ki5ka1dj208fc0dclbm0b4xp9d769pah2j9cs34l776p4r9zwa")))) + (base32 "1n0jrajpvc8hjkh9z4g8bwq63qy5vy5cgl2pzjardyih4ngcz3fq")))) (build-system r-build-system) (propagated-inputs `(("r-plyr" ,r-plyr) -- cgit v1.2.3 From e872949f0d5cfac190d48346e5a1a081ba604ea6 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 14 Apr 2020 15:59:50 +0200 Subject: gnu: r-gdtools: Update to 0.2.2. * gnu/packages/statistics.scm (r-gdtools): Update to 0.2.2. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 2333bb0537..0af01b3d03 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -1148,14 +1148,14 @@ (define-public r-ggdendro (define-public r-gdtools (package (name "r-gdtools") - (version "0.2.1") + (version "0.2.2") (source (origin (method url-fetch) (uri (cran-uri "gdtools" version)) (sha256 (base32 - "1aax50wyrs4336zpf247l8wmp4spab2n70msziy1ip4gbjn26wa1")))) + "08njzin0c6biw62j5w30r9j85vr1m2cg4hmv5d76nym860yrlqjf")))) (build-system r-build-system) (native-inputs `(("pkg-config" ,pkg-config))) -- cgit v1.2.3 From 1f0881875249cb08a54543cfe5a779a776275a9a Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 14 Apr 2020 15:59:57 +0200 Subject: gnu: r-xml2: Update to 1.3.1. * gnu/packages/statistics.scm (r-xml2): Update to 1.3.1. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 0af01b3d03..f1a9c371c6 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -1989,14 +1989,14 @@ (define-public r-ade4 (define-public r-xml2 (package (name "r-xml2") - (version "1.3.0") + (version "1.3.1") (source (origin (method url-fetch) (uri (cran-uri "xml2" version)) (sha256 (base32 - "138v9374xwc7flw8fz8qp8q3w4fch2jviij0g10dg92xn9dsyani")))) + "0r7rxp922785dcryghbb3wxqgdav7mafwnmxjqfx8zaj3v1q2j3z")))) (build-system r-build-system) (inputs `(("libxml2" ,libxml2) -- cgit v1.2.3 From f3310342ac2bf36b562e21ee71542b4e4cec684c Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 14 Apr 2020 16:00:04 +0200 Subject: gnu: r-backports: Update to 1.1.6. * gnu/packages/statistics.scm (r-backports): Update to 1.1.6. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index f1a9c371c6..82eb823ee2 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -2080,14 +2080,14 @@ (define-public r-whisker (define-public r-backports (package (name "r-backports") - (version "1.1.5") + (version "1.1.6") (source (origin (method url-fetch) (uri (cran-uri "backports" version)) (sha256 (base32 - "0k19w68b2aihyj5mflw3732gkkzs78sssqdns960pdw3yfnkiv33")))) + "170rphqq28j0pcr28g6dxv3isp436ajhyzkpri31pn0lfm3szs6h")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/backports") (synopsis "Reimplementations of functions introduced since R 3.0.0") -- cgit v1.2.3 From 5269899aacd897aedc3defb2022e4655281c3779 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 14 Apr 2020 16:00:14 +0200 Subject: gnu: r-devtools: Update to 2.3.0. * gnu/packages/statistics.scm (r-devtools): Update to 2.3.0. [native-inputs]: Add r-knitr. --- gnu/packages/statistics.scm | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 82eb823ee2..0269fe90be 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -2401,13 +2401,13 @@ (define-public r-rstudioapi (define-public r-devtools (package (name "r-devtools") - (version "2.2.2") + (version "2.3.0") (source (origin (method url-fetch) (uri (cran-uri "devtools" version)) (sha256 (base32 - "1bhb2j8ilpdzwd0c678mcgfpdw88vncsjma79afcikxmzcsz9279")))) + "1l6w765q180bg5mmdq5k2ymf6apz7ldhnknzf6ynfp1kf70pbhsg")))) (build-system r-build-system) (propagated-inputs `(("r-callr" ,r-callr) @@ -2435,6 +2435,8 @@ (define-public r-devtools ("r-testthat" ,r-testthat) ("r-usethis" ,r-usethis) ("r-withr" ,r-withr))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/hadley/devtools") (synopsis "Tools to make developing R packages easier") (description "The devtools package is a collection of package development -- cgit v1.2.3 From 28e1e573cb041e322e3be9db7425c14af7b2334e Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 14 Apr 2020 16:00:29 +0200 Subject: gnu: r-plotly: Update to 4.9.2.1. * gnu/packages/statistics.scm (r-plotly): Update to 4.9.2.1. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 0269fe90be..70d14bc4e5 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -3771,13 +3771,13 @@ (define-public r-purrr (define-public r-plotly (package (name "r-plotly") - (version "4.9.2") + (version "4.9.2.1") (source (origin (method url-fetch) (uri (cran-uri "plotly" version)) (sha256 (base32 - "19zw3qnhfgqdxlvma8xyikir46aiqhfcwxf072z9xgq0hknpblm5")))) + "1f0x83a2s7200iqi6gpngijks06fcvcbm6701d5r5rxpb8rawppl")))) (build-system r-build-system) (propagated-inputs `(("r-base64enc" ,r-base64enc) -- cgit v1.2.3 From e470b9fa99c3a7bb4c11a3db3d766eb391ab94a2 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 14 Apr 2020 16:00:36 +0200 Subject: gnu: r-sfsmisc: Update to 1.1-6. * gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-6. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 70d14bc4e5..4a15f229ce 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -4103,14 +4103,14 @@ (define-public r-fastcluster (define-public r-sfsmisc (package (name "r-sfsmisc") - (version "1.1-5") + (version "1.1-6") (source (origin (method url-fetch) (uri (cran-uri "sfsmisc" version)) (sha256 (base32 - "173qgm2bn84x544fc3x9gc2rv995sbsvji9lnn2drx8drvzyy8lf")))) + "04fvjdab6vyyghyqy0abxvfbyr1myz6yib7ibwiyjw9yf7fjrcjp")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/sfsmisc") (synopsis "Utilities from \"Seminar fuer Statistik\" ETH Zurich") -- cgit v1.2.3 From 91108903bc3deefff777640688a1b552c1313e93 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 14 Apr 2020 16:00:44 +0200 Subject: gnu: r-mclust: Update to 5.4.6. * gnu/packages/statistics.scm (r-mclust): Update to 5.4.6. [native-inputs]: Add r-knitr. --- gnu/packages/statistics.scm | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 4a15f229ce..f01169de58 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -4697,17 +4697,18 @@ (define-public r-flexmix (define-public r-mclust (package (name "r-mclust") - (version "5.4.5") + (version "5.4.6") (source (origin (method url-fetch) (uri (cran-uri "mclust" version)) (sha256 (base32 - "0whandnda1fnjn5k3hgxdbp3b0xr7nlzy1j37saqb536h8q9dwkm")))) + "1z46qask09x3xpv0wzvhn09218vwyrip4f5jrhnx96khpwvczzyl")))) (build-system r-build-system) (native-inputs - `(("gfortran" ,gfortran))) + `(("gfortran" ,gfortran) + ("r-knitr" ,r-knitr))) (home-page "https://www.stat.washington.edu/mclust/") (synopsis "Gaussian mixture modelling for model-based clustering etc.") (description -- cgit v1.2.3 From ec2b99c1f0c9d464429cf4b1d3fac31516b33d7f Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 14 Apr 2020 16:01:07 +0200 Subject: gnu: r-lme4: Update to 1.1-23. * gnu/packages/statistics.scm (r-lme4): Update to 1.1-23. [native-inputs]: Add r-knitr. [propagated-inputs]: Add r-statmod. --- gnu/packages/statistics.scm | 9 ++++++--- 1 file changed, 6 insertions(+), 3 deletions(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index f01169de58..4f95fe2d3d 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -5140,14 +5140,14 @@ (define-public r-nloptr (define-public r-lme4 (package (name "r-lme4") - (version "1.1-21") + (version "1.1-23") (source (origin (method url-fetch) (uri (cran-uri "lme4" version)) (sha256 (base32 - "035j2hqkwv939xl07pm2vykvf3wlx8qj317846n9pkpqkyv58mbz")))) + "0qh29kqli0l3naylgb6jha6jllx4nwryr3hv9yk37blgyyql5mcr")))) (build-system r-build-system) (propagated-inputs `(("r-boot" ,r-boot) @@ -5158,7 +5158,10 @@ (define-public r-lme4 ("r-nloptr" ,r-nloptr) ("r-nlme" ,r-nlme) ("r-rcpp" ,r-rcpp) - ("r-rcppeigen" ,r-rcppeigen))) + ("r-rcppeigen" ,r-rcppeigen) + ("r-statmod" ,r-statmod))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://cran.r-project.org/web/packages/lme4") (synopsis "Linear mixed-effects models using eigen and S4") (description -- cgit v1.2.3 From b493e5aba85ce7ac2a63c01f3087c15b4d1c84b9 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 14 Apr 2020 16:01:24 +0200 Subject: gnu: r-cairo: Update to 1.5-12. * gnu/packages/statistics.scm (r-cairo): Update to 1.5-12. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 4f95fe2d3d..27bbaabbfd 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -5409,14 +5409,14 @@ (define-public r-tsne (define-public r-cairo (package (name "r-cairo") - (version "1.5-11") + (version "1.5-12") (source (origin (method url-fetch) (uri (cran-uri "Cairo" version)) (sha256 (base32 - "1k9kpxcg5n4g6x2gydv344f4w0snqbhww14fnbbj1bny0mmv28xg")))) + "02v29am4fac3fyq6y1w6r89zwbqqkxjsxrafcwb5s124ikxyl22f")))) (properties `((upstream-name . "Cairo"))) (build-system r-build-system) (inputs -- cgit v1.2.3 From 2e47488c725502db4e4da9412ef563f4106deb10 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 14 Apr 2020 16:01:34 +0200 Subject: gnu: r-lubridate: Update to 1.7.8. * gnu/packages/statistics.scm (r-lubridate): Update to 1.7.8. [propagated-inputs]: Remove r-stringr; add r-generics. [native-inputs]: Add r-knitr. --- gnu/packages/statistics.scm | 13 +++++++------ 1 file changed, 7 insertions(+), 6 deletions(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 27bbaabbfd..5ed8b50592 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -5445,20 +5445,21 @@ (define-public r-cairo (define-public r-lubridate (package (name "r-lubridate") - (version "1.7.4") + (version "1.7.8") (source (origin (method url-fetch) (uri (cran-uri "lubridate" version)) (sha256 (base32 - "14a823il77w3wmmnzr89vwrqp50y56dh5raycnaw6c8nv5xsh32i")))) + "0g2m9dyhgds4shdrk76w7rqdl9msam4rii2qrhz12gipzhi9k89x")))) (build-system r-build-system) (propagated-inputs - `(("r-rcpp" ,r-rcpp) - ("r-stringr" ,r-stringr))) - (home-page - "https://cran.r-project.org/web/packages/lubridate") + `(("r-generics" ,r-generics) + ("r-rcpp" ,r-rcpp))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://cran.r-project.org/web/packages/lubridate/") (synopsis "Make dealing with dates a little easier") (description "This package provides functions to work with date-times and time-spans: -- cgit v1.2.3 From 3707efe4e1d4c92a8bdf080bc44c4a5e20f4dc68 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 14 Apr 2020 16:39:23 +0200 Subject: gnu: r-rcpparmadillo: Update to 0.9.860.2.0. * gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.860.2.0. [native-inputs]: Remove r-knitr, r-rmarkdown, ghc-pandoc, and ghc-pandoc-citeproc. --- gnu/packages/statistics.scm | 10 ++-------- 1 file changed, 2 insertions(+), 8 deletions(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 5ed8b50592..b8e516f49c 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -2575,21 +2575,15 @@ (define-public r-latticeextra (define-public r-rcpparmadillo (package (name "r-rcpparmadillo") - (version "0.9.850.1.0") + (version "0.9.860.2.0") (source (origin (method url-fetch) (uri (cran-uri "RcppArmadillo" version)) (sha256 (base32 - "0q9clhmbwwph47hrhx5827m7njrcl2klihyqbkf0ihwlbqrjijwz")))) + "1rg9ak0zbv8d9cyj10jq52nrcbk1pvfz28kbkhpx79mpjhrl7pb5")))) (properties `((upstream-name . "RcppArmadillo"))) (build-system r-build-system) - ;; All needed for vignettes - (native-inputs - `(("r-knitr" ,r-knitr) - ("r-rmarkdown" ,r-rmarkdown) - ("ghc-pandoc" ,ghc-pandoc) - ("ghc-pandoc-citeproc" ,ghc-pandoc-citeproc))) (propagated-inputs `(("r-rcpp" ,r-rcpp))) (home-page "https://github.com/RcppCore/RcppArmadillo") -- cgit v1.2.3