From 944cb87a33e222cacae6647f37325b94e6a47568 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 11 Jun 2019 13:39:38 +0200
Subject: gnu: Add r-psiplot.

* gnu/packages/bioinformatics.scm (r-psiplot): New variable.
---
 gnu/packages/bioinformatics.scm | 31 +++++++++++++++++++++++++++++++
 1 file changed, 31 insertions(+)

(limited to 'gnu/packages')

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index bb15672d51..089804eaa9 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -14755,3 +14755,34 @@ (define-public ataqv
 might be caused by ATAC-seq library prep or sequencing.  The main program,
 @code{ataqv}, examines aligned reads and reports some basic metrics.")
     (license license:gpl3+)))
+
+(define-public r-psiplot
+  (package
+    (name "r-psiplot")
+    (version "2.3.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/kcha/psiplot.git")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "08438h16cfry5kqh3y9hs8q1b1a8bxhblsm75knviz5r6q0n1jxh"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-mass" ,r-mass)
+       ("r-dplyr" ,r-dplyr)
+       ("r-tidyr" ,r-tidyr)
+       ("r-purrr" ,r-purrr)
+       ("r-readr" ,r-readr)
+       ("r-magrittr" ,r-magrittr)
+       ("r-ggplot2" ,r-ggplot2)))
+    (home-page "https://github.com/kcha/psiplot")
+    (synopsis "Plot percent spliced-in values of alternatively-spliced exons")
+    (description
+     "PSIplot is an R package for generating plots of @dfn{percent
+spliced-in} (PSI) values of alternatively-spliced exons that were computed by
+vast-tools, an RNA-Seq pipeline for alternative splicing analysis.  The plots
+are generated using @code{ggplot2}.")
+    (license license:expat)))
-- 
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