From ad641d53ded0ffa31472e65ca51f22b0fe70e414 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Wed, 18 Mar 2015 14:39:42 +0100
Subject: gnu: Add python2-bx-python.

* gnu/packages/bioinformatics.scm (python2-bx-python): New variable.
---
 gnu/packages/bioinformatics.scm | 35 +++++++++++++++++++++++++++++++++++
 1 file changed, 35 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index fc0ce4a166..744f8c2a4a 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -285,6 +285,41 @@ (define-public bwa
 70-100bp Illumina reads.")
     (license license:gpl3+)))
 
+(define-public python2-bx-python
+  (package
+    (name "python2-bx-python")
+    (version "0.7.2")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append
+                    "https://pypi.python.org/packages/source/b/bx-python/bx-python-"
+                    version ".tar.gz"))
+              (sha256
+               (base32
+                "0ld49idhc5zjdvbhvjq1a2qmpjj7h5v58rqr25dzmfq7g34b50xh"))
+              (modules '((guix build utils)))
+              (snippet
+               '(substitute* "setup.py"
+                  ;; remove dependency on outdated "distribute" module
+                  (("^from distribute_setup import use_setuptools") "")
+                  (("^use_setuptools\\(\\)") "")))))
+    (build-system python-build-system)
+    (arguments
+     `(#:tests? #f ;tests fail because test data are not included
+       #:python ,python-2))
+    (inputs
+     `(("python-numpy" ,python2-numpy)
+       ("zlib" ,zlib)))
+    (native-inputs
+     `(("python-nose" ,python2-nose)
+       ("python-setuptools" ,python2-setuptools)))
+    (home-page "http://bitbucket.org/james_taylor/bx-python/")
+    (synopsis "Tools for manipulating biological data")
+    (description
+     "bx-python provides tools for manipulating biological data, particularly
+multiple sequence alignments.")
+    (license license:expat)))
+
 (define-public clipper
   (package
     (name "clipper")
-- 
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