From ddb8312911caa3e6d6039c098f544ab4296758b7 Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Wed, 30 Mar 2016 22:45:35 +0300 Subject: gnu: python2-pbcore: Update to 1.2.8. * gnu/packages/bioinformatics.scm (python2-pbcore): Update to 1.2.8. [native-inputs]: Add python2-docutils, python2-nose, python2-sphinx. --- gnu/packages/bioinformatics.scm | 15 ++++++++------- 1 file changed, 8 insertions(+), 7 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 887f6cc99b..250deb9b6b 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4,6 +4,7 @@ ;;; Copyright © 2015, 2016 Pjotr Prins ;;; Copyright © 2015 Andreas Enge ;;; Copyright © 2016 Roel Janssen +;;; Copyright © 2016 Efraim Flashner ;;; ;;; This file is part of GNU Guix. ;;; @@ -2507,16 +2508,13 @@ interrupted by stop codons. OrfM finds and prints these ORFs.") (define-public python2-pbcore (package (name "python2-pbcore") - (version "0.9.3") + (version "1.2.8") (source (origin (method url-fetch) - (uri (string-append - "https://github.com/PacificBiosciences/pbcore/archive/" - version ".tar.gz")) - (file-name (string-append name "-" version ".tar.gz")) + (uri (pypi-uri "pbcore" version)) (sha256 (base32 - "1z46rwjac93jm87cbj2zgjg6qvsgs65140wkbbxsvxps7ai4pm09")))) + "02pfn5raa3zf739672bg0dkx7z3j2c4nx7vmpfjqy5b12jrqpymk")))) (build-system python-build-system) (arguments `(#:python ,python-2)) ; pbcore requires Python 2.7 (inputs @@ -2525,7 +2523,10 @@ interrupted by stop codons. OrfM finds and prints these ORFs.") ("python-pysam" ,python2-pysam) ("python-h5py" ,python2-h5py))) (native-inputs - `(("python-setuptools" ,python2-setuptools))) + `(("python-docutils" ,python2-docutils) + ("python-nose" ,python2-nose) + ("python-setuptools" ,python2-setuptools) + ("python-sphinx" ,python2-sphinx))) (home-page "http://pacificbiosciences.github.io/pbcore/") (synopsis "Library for reading and writing PacBio data files") (description -- cgit v1.2.3