summaryrefslogtreecommitdiff
path: root/gnu/packages/datamash.scm
blob: ac5094935ae6b6daa29290daf4ae921f3f127d9a (about) (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2014, 2018 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2016-2020, 2022 Efraim Flashner <efraim@flashner.co.il>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.

(define-module (gnu packages datamash)
  #:use-module (guix packages)
  #:use-module (guix licenses)
  #:use-module (guix download)
  #:use-module (guix git-download)
  #:use-module (guix build-system gnu)
  #:use-module (guix gexp)
  #:use-module (guix utils)
  #:use-module (gnu packages)
  #:use-module (gnu packages base)
  #:use-module (gnu packages gawk)
  #:use-module (gnu packages perl)
  #:use-module (gnu packages python)
  #:use-module (gnu packages python-xyz))

(define-public datamash
  (package
    (name "datamash")
    (version "1.8")
    (source
     (origin
      (method url-fetch)
      (uri (string-append "mirror://gnu/datamash/datamash-"
                          version ".tar.gz"))
      (sha256
       (base32
        "1zgn55gvf60w2rs5f7vx7vdp50j89ki7mmjvm81xs5pngs67xnbs"))))
    (native-inputs
     (list which ;for tests
           perl))                 ;for help2man
    (build-system gnu-build-system)
    (home-page "https://www.gnu.org/software/datamash/")
    (synopsis "Scriptable statistics and data calculation")
    (description
     "Perform basic numeric, textual and statistical operations on plain text
files.  Designed to work within standard pipelines without additional code.")
    (license gpl3+)))

(define-public vnlog
  (package
    (name "vnlog")
    (version "1.32")
    (home-page "https://github.com/dkogan/vnlog")
    (source (origin
              (method git-fetch)
              (uri (git-reference
                    (url home-page)
                    (commit (string-append "v" version))))
              (file-name (git-file-name name version))
              (sha256
               (base32
                "1g4insm6gkw3c82fq8q9swkdha3cncbz1nib15yg9b2s4yl123hm"))))
    (build-system gnu-build-system)
    (native-inputs
     (list python-numpy))               ;for tests
    (inputs
     (list mawk
           perl
           perl-ipc-run
           perl-list-moreutils
           perl-string-shellquote
           perl-text-diff
           perl-text-table
           python-wrapper))
    (arguments
     (list #:make-flags
           #~(list (string-append "CC=" #$(cc-for-target))
                   (string-append "DESTDIR=" #$output)
                   "USRLIB=lib"
                   "MANDIR=share/man"
                   (string-append "PY3_MODULE_PATH=lib/python"
                                  #$(version-major+minor
                                     (package-version
                                      (this-package-input "python-wrapper")))
                                  "/site-packages")
                   ;; Do not install the Python 2 modules.
                   "DIST_PY2_MODULES=")
           #:phases
           #~(modify-phases %standard-phases
               (add-after 'unpack 'adjust-Makefile
                 (lambda _
                   (substitute* "GNUmakefile"
                     ;; Install Perl modules to the usual location.
                     (("/usr/share/perl5")
                      (string-append "/lib/perl5/site_perl/"
                                     #$(package-version
                                        (this-package-input "perl"))))
                     ;; Do not add a '/usr' suffix to DESTDIR.
                     (("\\$\\(DESTDIR\\)/usr")
                      "$(DESTDIR)")
                     ;; Do not strip RUNPATH from the installed C library.
                     ((".*find.*chrpath.*")
                      ""))))
               (add-after 'unpack 'use-absolute-mawk
                 (lambda* (#:key inputs #:allow-other-keys)
                   (let ((mawk (search-input-file inputs "bin/mawk")))
                     (substitute* '("vnl-filter" "lib/Vnlog/Util.pm")
                       (("'mawk'")
                        (string-append "'" mawk "'"))))))
               (delete 'configure)
               (add-before 'check 'disable-python2-test
                 (lambda _
                   (delete-file "test/test_python2_parser.sh")
                   (substitute* "GNUmakefile"
                     ((".*test/test_python2_parser\\.sh\\.RUN.*")
                      ""))))
               (add-after 'install 'wrap
                 (lambda* (#:key inputs outputs #:allow-other-keys)
                   (let* ((out (assoc-ref outputs "out"))
                          (PERL5LIB (string-append
                                     out "/lib/perl5/site_perl/"
                                     #$(package-version
                                        (this-package-input "perl"))
                                     ":" (getenv "PERL5LIB"))))
                     (for-each (lambda (script)
                                 (wrap-program script
                                   `("PERL5LIB" ":" prefix (,PERL5LIB))))
                               (find-files (string-append out "/bin"))))))
               (add-after 'wrap 'check-wrapped-executables
                 (lambda* (#:key outputs #:allow-other-keys)
                   (let ((out (assoc-ref outputs "out")))
                     ;; Assert that the installed Perl scripts can find
                     ;; their dependencies even when PERL5LIB is unset.
                     (unsetenv "PERL5LIB")
                     (for-each (lambda (script)
                                 (invoke/quiet script "--help"))
                               (find-files (string-append out "/bin")
                                           "^vnl-[[:lower:]]+$"))))))))
    (synopsis "Process labelled tabular ASCII data on the command line")
    (description
     "Vnlog (pronounced @dfn{vanillog}) is a toolkit for manipulating
tabular ASCII data with labelled fields using regular command-line tools.")
    (license lgpl2.1+)))