1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
1001
1002
1003
1004
1005
1006
1007
1008
1009
1010
1011
1012
1013
1014
1015
1016
1017
1018
1019
1020
1021
1022
1023
1024
1025
1026
1027
1028
1029
1030
1031
1032
1033
1034
1035
1036
1037
1038
1039
1040
1041
1042
1043
1044
1045
1046
1047
1048
1049
1050
1051
1052
1053
1054
1055
1056
1057
1058
1059
1060
1061
1062
1063
1064
1065
1066
1067
1068
1069
1070
1071
1072
1073
1074
1075
1076
1077
1078
1079
1080
1081
1082
1083
1084
1085
1086
1087
1088
1089
1090
1091
1092
1093
1094
1095
1096
1097
1098
1099
1100
1101
1102
1103
1104
1105
1106
1107
1108
1109
1110
1111
1112
1113
1114
1115
1116
1117
1118
1119
1120
1121
1122
1123
1124
1125
1126
1127
1128
1129
1130
1131
1132
1133
1134
1135
1136
1137
1138
1139
1140
1141
1142
1143
1144
1145
1146
1147
1148
1149
1150
1151
1152
1153
1154
1155
1156
1157
1158
1159
1160
1161
1162
1163
1164
1165
1166
1167
1168
1169
1170
1171
1172
1173
1174
1175
1176
1177
1178
1179
1180
1181
1182
1183
1184
1185
1186
1187
1188
1189
1190
1191
1192
1193
1194
1195
1196
1197
1198
1199
1200
1201
1202
1203
1204
1205
1206
1207
1208
1209
1210
1211
1212
1213
1214
1215
1216
1217
1218
1219
1220
1221
1222
1223
1224
1225
1226
1227
1228
1229
1230
1231
1232
1233
1234
1235
1236
1237
1238
1239
1240
1241
1242
1243
1244
1245
1246
1247
1248
1249
1250
1251
1252
1253
1254
1255
1256
1257
1258
1259
1260
1261
1262
1263
1264
1265
1266
1267
1268
1269
1270
1271
1272
1273
1274
1275
1276
1277
1278
1279
1280
1281
1282
1283
1284
1285
1286
1287
1288
1289
1290
1291
1292
1293
1294
1295
1296
1297
1298
1299
1300
1301
1302
1303
1304
1305
1306
1307
1308
1309
1310
1311
1312
1313
1314
1315
1316
1317
1318
1319
1320
1321
1322
1323
1324
1325
1326
1327
1328
1329
1330
1331
1332
1333
1334
1335
1336
1337
1338
1339
1340
1341
1342
1343
1344
1345
1346
1347
1348
1349
1350
1351
1352
1353
1354
1355
1356
1357
1358
1359
1360
1361
1362
1363
1364
1365
1366
1367
1368
1369
1370
1371
1372
1373
1374
1375
1376
1377
1378
1379
1380
1381
1382
1383
1384
1385
1386
1387
1388
1389
1390
1391
1392
1393
1394
1395
1396
1397
1398
1399
1400
1401
1402
1403
1404
1405
1406
1407
1408
1409
1410
1411
1412
1413
1414
1415
1416
1417
1418
1419
1420
1421
1422
1423
1424
1425
1426
1427
1428
1429
1430
1431
1432
1433
1434
1435
1436
1437
1438
1439
1440
1441
1442
1443
1444
1445
1446
1447
1448
1449
1450
1451
1452
1453
1454
1455
1456
1457
1458
1459
1460
1461
1462
1463
1464
1465
1466
1467
1468
1469
1470
1471
1472
1473
1474
1475
1476
1477
1478
1479
1480
1481
1482
1483
1484
1485
1486
1487
1488
1489
1490
1491
1492
1493
1494
1495
1496
1497
1498
1499
1500
1501
1502
1503
1504
1505
1506
1507
1508
1509
1510
1511
1512
1513
1514
1515
1516
1517
1518
1519
1520
1521
1522
1523
1524
1525
1526
1527
1528
1529
1530
1531
1532
1533
1534
1535
1536
1537
1538
1539
1540
1541
1542
1543
1544
1545
1546
1547
1548
1549
1550
1551
1552
1553
1554
1555
1556
1557
1558
1559
1560
1561
1562
1563
1564
1565
1566
1567
1568
1569
1570
1571
1572
1573
1574
1575
1576
1577
1578
1579
1580
1581
1582
1583
1584
1585
1586
1587
1588
1589
1590
1591
1592
1593
1594
1595
1596
1597
1598
1599
1600
1601
1602
1603
1604
1605
1606
1607
1608
1609
1610
1611
1612
1613
1614
1615
1616
1617
1618
1619
1620
1621
1622
1623
1624
1625
1626
1627
1628
1629
1630
1631
1632
1633
1634
1635
1636
1637
1638
1639
1640
1641
1642
1643
1644
1645
1646
1647
1648
1649
1650
1651
1652
1653
1654
1655
1656
1657
1658
1659
1660
1661
1662
1663
1664
1665
1666
1667
1668
1669
1670
1671
1672
1673
1674
1675
1676
1677
1678
1679
1680
1681
1682
1683
1684
1685
1686
1687
1688
1689
1690
1691
1692
1693
1694
1695
1696
1697
1698
1699
1700
1701
1702
1703
1704
1705
1706
1707
1708
1709
1710
1711
1712
1713
1714
1715
1716
1717
1718
1719
1720
1721
1722
1723
1724
1725
1726
1727
1728
1729
1730
1731
1732
1733
1734
1735
1736
1737
1738
1739
1740
1741
1742
1743
1744
1745
1746
1747
1748
1749
1750
1751
1752
1753
1754
1755
1756
1757
1758
1759
1760
1761
1762
1763
1764
1765
1766
1767
1768
1769
1770
1771
1772
1773
1774
1775
1776
1777
1778
1779
1780
1781
1782
1783
1784
1785
1786
1787
1788
1789
1790
1791
1792
1793
1794
1795
1796
1797
1798
1799
1800
1801
1802
1803
1804
1805
1806
1807
1808
1809
1810
1811
1812
1813
1814
1815
1816
1817
1818
1819
1820
1821
1822
1823
1824
1825
1826
1827
1828
1829
1830
1831
1832
1833
1834
1835
1836
1837
1838
1839
1840
1841
1842
|
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2017 John Darrington <jmd@gnu.org>
;;; Copyright © 2017, 2019, 2022 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2014, 2021-2023 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2014 Mark H Weaver <mhw@netris.org>
;;; Copyright © 2016 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2018–2021 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2018 Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
;;; Copyright © 2018 Lprndn <guix@lprndn.info>
;;; Copyright © 2019, 2021, 2023 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2020 Vincent Legoll <vincent.legoll@gmail.com>
;;; Copyright © 2020, 2021 Vinicius Monego <monego@posteo.net>
;;; Copyright © 2020 Pierre Neidhardt <mail@ambrevar.xyz>
;;; Copyright © 2020 Brendan Tildesley <mail@brendan.scot>
;;; Copyright © 2021 Oleh Malyi <astroclubzp@gmail.com>
;;; Copyright © 2021, 2022 Felix Gruber <felgru@posteo.net>
;;; Copyright © 2021 Andy Tai <atai@atai.org>
;;; Copyright © 2021 Ekaitz Zarraga <ekaitz@elenq.tech>
;;; Copyright © 2021 Paul Garlick <pgarlick@tourbillion-technology.com>
;;; Copyright © 2021 Guillaume Le Vaillant <glv@posteo.net>
;;; Copyright © 2021 Ivan Gankevich <i.gankevich@spbu.ru>
;;; Copyright © 2022 Maxim Cournoyer <maxim.cournoyer@gmail.com>
;;; Copyright © 2022 Tomasz Jeneralczyk <tj@schwi.pl>
;;; Copyright © 2022 Paul A. Patience <paul@apatience.com>
;;; Copyright © 2023 Cairn <cairn@pm.me>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
(define-module (gnu packages image-processing)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages)
#:use-module (guix gexp)
#:use-module (guix utils)
#:use-module (guix download)
#:use-module (guix git-download)
#:use-module (guix build-system qt)
#:use-module (guix build-system cmake)
#:use-module (guix build-system gnu)
#:use-module (guix build-system python)
#:use-module (gnu packages)
#:use-module (gnu packages algebra)
#:use-module (gnu packages bash)
#:use-module (gnu packages bison)
#:use-module (gnu packages boost)
#:use-module (gnu packages check)
#:use-module (gnu packages compression)
#:use-module (gnu packages cpp)
#:use-module (gnu packages curl)
#:use-module (gnu packages docbook)
#:use-module (gnu packages documentation)
#:use-module (gnu packages flex)
#:use-module (gnu packages fontutils)
#:use-module (gnu packages game-development)
#:use-module (gnu packages gcc)
#:use-module (gnu packages gd)
#:use-module (gnu packages geo)
#:use-module (gnu packages ghostscript)
#:use-module (gnu packages gimp)
#:use-module (gnu packages gl)
#:use-module (gnu packages glib)
#:use-module (gnu packages gnome)
#:use-module (gnu packages graphics)
#:use-module (gnu packages graphviz)
#:use-module (gnu packages gstreamer)
#:use-module (gnu packages gtk)
#:use-module (gnu packages icu4c)
#:use-module (gnu packages image)
#:use-module (gnu packages imagemagick)
#:use-module (gnu packages linux)
#:use-module (gnu packages maths)
#:use-module (gnu packages mpi)
#:use-module (gnu packages opencl)
#:use-module (gnu packages pdf)
#:use-module (gnu packages perl)
#:use-module (gnu packages photo)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages pretty-print)
#:use-module (gnu packages protobuf)
#:use-module (gnu packages python)
#:use-module (gnu packages python-check)
#:use-module (gnu packages python-science)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages qt)
#:use-module (gnu packages sdl)
#:use-module (gnu packages serialization)
#:use-module (gnu packages sphinx)
#:use-module (gnu packages sqlite)
#:use-module (gnu packages tbb)
#:use-module (gnu packages textutils)
#:use-module (gnu packages tls)
#:use-module (gnu packages version-control)
#:use-module (gnu packages video)
#:use-module (gnu packages xiph)
#:use-module (gnu packages xml)
#:use-module (gnu packages xorg)
#:use-module (ice-9 match)
#:use-module (srfi srfi-1))
;; TODO: this is not reproducible.
(define-public bart
(package
(name "bart")
(version "0.8.00")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/mrirecon/bart")
(commit "eacc67b95cf128487ecc48f0e6541ea4dca08818")))
(file-name (git-file-name name version))
(sha256
(base32 "05lcf7c3g7ms5h82bw1mi4kzkdv5wpqi1zrfhqfkgbcpd3irj6aq"))))
(build-system gnu-build-system)
(arguments
(list
#:test-target "utest"
#:make-flags #~(list
(string-append "PREFIX=" #$output)
"PARALLEL=1"
"PARALLEL_NJOBS=1"
"OPENBLAS=1"
"SCALAPACK=1"
(string-append "BLAS_BASE=" #$(this-package-input "openblas"))
(string-append "FFTW_BASE=" #$(this-package-input "fftw")))
#:parallel-build? #false ;leads to non-deterministic output
#:phases
#~(modify-phases %standard-phases
(delete 'configure)
(add-after 'unpack 'patch-/bin/bash
(lambda _
(substitute* "tests/pics.mk"
(("/bin/bash") (which "bash"))))))))
(inputs
(list fftw
fftwf
libpng
openblas
python
scalapack))
(native-inputs
(list doxygen
util-linux)) ;for flock
(home-page "https://mrirecon.github.io/bart/")
(synopsis "Toolbox for computational magnetic resonance imaging")
(description "The Berkeley Advanced Reconstruction Toolbox (BART) is an
image-reconstruction framework for Computational Magnetic Resonance Imaging.
The tools in this software implement various reconstruction algorithms for
Magnetic Resonance Imaging.")
(license license:bsd-3)))
(define-public dcmtk
(package
(name "dcmtk")
(version "3.6.7")
(source
(origin
(method url-fetch)
(uri
(string-append "ftp://dicom.offis.de/pub/dicom/offis/software/dcmtk/"
"dcmtk" (string-join (string-split version #\.) "")
"/dcmtk-" version ".tar.gz"))
(sha256
(base32 "02kix73qhndgb56cmi5327666i6imp7hi17wwqp26q4d7s72jn3w"))))
(build-system cmake-build-system)
(arguments
;; By default, only static archives are built.
(list #:configure-flags #~(list "-DBUILD_SHARED_LIBS=ON")))
(inputs
(list icu4c
libjpeg-turbo
libpng
libtiff
libxml2
openssl
zlib))
(native-inputs
(list doxygen)) ; for HTML documentation
(home-page "https://dcmtk.org")
(synopsis "Libraries and programs implementing parts of the DICOM standard")
(description "DCMTK is a collection of libraries and applications
implementing large parts the DICOM standard. It includes software for
examining, constructing and converting DICOM image files, handling offline
media, sending and receiving images over a network connection, as well as
demonstrative image storage and worklist servers.")
(license (license:fsf-free
"file://COPYRIGHT"
"A union of the Apache 2.0 licence and various non-copyleft
licences similar to the Modified BSD licence."))))
(define-public mia
(package
(name "mia")
(version "2.4.7")
(source (origin
(method url-fetch)
(uri (string-append "mirror://sourceforge/mia/mia/"
(version-major+minor version)
"/mia-" version ".tar.xz"))
(sha256
(base32
"0qpcd3n26q52dpyibm11f5l6cgscdr54p2jish39gc3p1f5h3ws1"))
(patches (search-patches "mia-fix-boost-headers.patch"
"mia-vtk9.patch"
"mia-vtk92.patch"
"mia-vtk-version.patch"))))
(build-system cmake-build-system)
(arguments
`(#:configure-flags
(list "-DMIA_CREATE_NIPYPE_INTERFACES=OFF"
"-DCMAKE_CXX_FLAGS=-fpermissive")))
(inputs
(list boost
dcmtk
doxygen
eigen
fftw
fftwf
gsl
gts
hdf5
itpp
libjpeg-turbo
libpng
libtiff
libxml2
libxml++
maxflow
niftilib
nlopt
openexr-2
python-lxml
vtk))
(native-inputs
(list pkg-config
python-wrapper))
(home-page "https://mia.sourceforge.net")
(synopsis "Toolkit for gray scale medical image analysis")
(description "MIA provides a combination of command line tools, plug-ins,
and libraries that make it possible run image processing tasks interactively
in a command shell and to prototype using the shell's scripting language. It
is built around a plug-in structure that makes it easy to add functionality
without compromising the original code base and it makes use of a wide variety
of external libraries that provide additional functionality.")
(license license:gpl3+)))
(define-public opencolorio
(package
(name "opencolorio")
(version "1.1.1")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/AcademySoftwareFoundation/OpenColorIO")
(commit (string-append "v" version))))
(patches (search-patches "opencolorio-fix-build-with-gcc11.patch"))
(sha256
(base32 "12srvxca51czpfjl0gabpidj9n84mw78ivxy5w75qhq2mmc798sb"))
(file-name (git-file-name name version))
(modules '((guix build utils)))
(snippet
`(begin
;; Remove bundled tarballs, patches, and .jars(!). XXX: Upstream
;; claims to have fixed USE_EXTERNAL_YAML, but it still fails with:
;; https://github.com/AcademySoftwareFoundation/OpenColorIO/issues/517
;; When removing it, also remove it from the licence field comment.
(for-each delete-file-recursively
(filter
(lambda (full-name)
(let ((file (basename full-name)))
(not (or (string-prefix? "yaml-cpp-0.3" file)
(string=? "unittest.h" file)))))
(find-files "ext" ".*")))
#t))))
(build-system cmake-build-system)
(arguments
`(#:configure-flags
(list (string-append "-DCMAKE_CXX_FLAGS="
"-Wno-error=deprecated-declarations "
"-Wno-error=unused-function")
"-DOCIO_BUILD_STATIC=OFF"
;; "-DUSE_EXTERNAL_YAML=ON"
"-DUSE_EXTERNAL_TINYXML=ON"
"-DUSE_EXTERNAL_LCMS=ON")
#:phases
(modify-phases %standard-phases
(add-after 'unpack 'patch-test-suite
(lambda _
(substitute* "src/core_tests/CMakeLists.txt"
(("/bin/sh") (which "bash")))
#t)))))
(native-inputs
(list git pkg-config))
(inputs
;; XXX Adding freeglut, glew, ilmbase, mesa, and openimageio for
;; ocioconvert fails: error: conflicting declaration ?typedef void
;; (* PFNGLGETFRAGMENTMATERIALFVSGIXPROC)(GLenum, GLenum, GLfloat*)
(list lcms openexr-2 tinyxml))
(home-page "https://opencolorio.org")
(synopsis "Color management for visual effects and animation")
(description
"OpenColorIO, or OCIO, is a complete color management solution geared
towards motion picture production, with an emphasis on visual effects and
computer animation. It provides a straightforward and consistent user
experience across all supporting applications while allowing for sophisticated
back-end configuration options suitable for high-end production usage.
OCIO is compatible with the @acronym{ACES, Academy Color Encoding
Specification} and is @acronym{LUT, look-up table}-format agnostic, supporting
many popular formats.")
(license (list license:expat ; docs/ociotheme/static, ext/yaml-cpp-*
license:zlib ; src/core/md5
license:bsd-3)))) ; the rest
(define-public vtk
(package
(name "vtk")
(version "9.2.2")
(source (origin
(method url-fetch)
(uri (string-append "https://vtk.org/files/release/"
(version-major+minor version)
"/VTK-" version ".tar.gz"))
(sha256
(base32
"0x8h2bwxq2870067j7wqd0qym87pa3inkbri93zrdb0zwwmhlnqw"))
(modules '((guix build utils)))
(snippet
'(begin
(for-each
(lambda (dir)
(delete-file-recursively
(string-append "ThirdParty/" dir "/vtk" dir)))
;; pugixml depended upon unconditionally
'("doubleconversion" "eigen" "expat" "freetype" "gl2ps"
"glew" "hdf5" "jpeg" "jsoncpp" "libharu" "libproj"
"libxml2" "lz4" "netcdf" "ogg" "png" "sqlite" "theora"
"tiff" "zlib"))
(substitute* "IO/ExportPDF/vtkPDFContextDevice2D.cxx"
(("\\bHPDF_UINT16 (noPen|dash|dot|denseDot|dashDot|dashDotDot)\\b"
_ var)
(string-append "HPDF_REAL " var)))))))
(properties `((release-monitoring-url . "https://vtk.org/download/")))
(build-system cmake-build-system)
(arguments
(list #:build-type "Release" ;Build without '-g' to save space.
#:configure-flags
#~'( ;;"-DBUILD_TESTING:BOOL=TRUE" ;not honored
"-DVTK_USE_EXTERNAL=OFF" ;default
"-DVTK_MODULE_USE_EXTERNAL_VTK_doubleconversion=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_eigen=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_expat=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_freetype=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_gl2ps=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_glew=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_hdf5=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_jpeg=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_jsoncpp=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_libharu=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_libproj=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_libxml2=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_lz4=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_netcdf=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_ogg=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_png=ON"
;;"-DVTK_MODULE_USE_EXTERNAL_VTK_pugixml=ON" ;breaks IO/CityGML
"-DVTK_MODULE_USE_EXTERNAL_VTK_sqlite=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_theora=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_tiff=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_zlib=ON"
"-DVTK_MODULE_ENABLE_VTK_RenderingExternal=YES" ;for F3D
"-DVTK_WRAP_PYTHON=ON"
"-DVTK_PYTHON_VERSION:STRING=3"
"-DVTK_SMP_ENABLE_OPENNMP=ON"
"-DVTK_SMP_ENABLE_TBB=ON"
"-DVTK_USE_MPI=ON"
#$@(if (target-riscv64?)
'("-DCMAKE_SHARED_LINKER_FLAGS=-latomic"
"-DCMAKE_EXE_LINKER_FLAGS=-latomic")
'()))
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'clear-reference-to-compiler
(lambda _
(define (choose . files)
(let loop ((files files))
(if (null? files)
#f
(if (file-exists? (car files))
(car files)
(loop (cdr files))))))
;; Do not retain a reference to GCC.
(substitute* (choose
"Common/Core/vtkConfigureDeprecated.h.in" ;v9.x
"Common/Core/vtkConfigure.h.in") ;v7.x
(("@CMAKE_CXX_COMPILER@") "c++")))))
#:tests? #f)) ;XXX: test data not included
(inputs
(list double-conversion
eigen
expat
freetype
gl2ps
glew
glu
hdf5
libharu
libjpeg-turbo
jsoncpp
libtheora
libx11
libxml2
libxt
lz4
mesa
netcdf
libpng
libtiff
openmpi
proj
python
;("pugixml" ,pugixml)
sqlite
xorgproto
zlib))
(propagated-inputs
;; VTK's 'VTK-vtk-module-find-packages.cmake' calls
;; 'find_package(THEORA)', which in turns looks for libogg. Likewise for
;; TBB.
(list libogg
tbb))
(home-page "https://vtk.org/")
(synopsis "Libraries for 3D computer graphics")
(description
"The Visualization Toolkit (VTK) is a C++ library for 3D computer graphics,
image processing and visualization. It supports a wide variety of
visualization algorithms including: scalar, vector, tensor, texture, and
volumetric methods; and advanced modeling techniques such as: implicit
modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay
triangulation. VTK has an extensive information visualization framework, has
a suite of 3D interaction widgets, supports parallel processing, and
integrates with various databases on GUI toolkits such as Qt and Tk.")
(license license:bsd-3)))
(define-public vtk-7
(package
(inherit vtk)
(version "7.1.1")
(source (origin
(method url-fetch)
(uri (string-append "https://vtk.org/files/release/"
(version-major+minor version)
"/VTK-" version ".tar.gz"))
(sha256
(base32
"0nm7xwwj7rnsxjdv2ssviys8nhci4n9iiiqm2y14s520hl2dsp1d"))
(patches (search-patches "vtk-7-python-compat.patch"
"vtk-7-hdf5-compat.patch"
"vtk-7-gcc-10-compat.patch"
"vtk-7-gcc-11-compat.patch"))))
(arguments
(substitute-keyword-arguments (package-arguments vtk)
((#:configure-flags flags)
;; Otherwise, the build would fail with: "error: invalid conversion
;; from ‘const char*’ to ‘char*’ [-fpermissive]".
#~(cons "-DCMAKE_CXX_FLAGS=-fpermissive" #$flags))
((#:phases phases)
#~(modify-phases #$phases
(add-after 'unpack 'remove-kernel-version
;; Avoid embedding the kernel version for reproducible builds
(lambda _
(substitute*
"ThirdParty/hdf5/vtkhdf5/config/cmake/libhdf5.settings.cmake.in"
(("Host system: \\@CMAKE_HOST_SYSTEM\\@")
"Host system: @CMAKE_SYSTEM_NAME@"))))))))))
(define-public opencv
(package
(name "opencv")
(version "4.8.0")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/opencv/opencv")
(commit version)))
(file-name (git-file-name name version))
(modules '((guix build utils)))
(snippet
'(begin
;; Remove external libraries. Almost all of them are
;; available in Guix.
(with-directory-excursion "3rdparty"
(for-each delete-file-recursively
'("carotene"
"cpufeatures"
"flatbuffers"
"ffmpeg"
"include"
"ippicv"
"ittnotify"
"libjasper"
"libjpeg"
"libjpeg-turbo"
"libpng"
"libtengine"
"libtiff"
"libwebp"
"openexr"
"openjpeg"
"openvx"
"protobuf"
;;"quirc"
"tbb"
"zlib")))
;; Delete any bundled .jar files.
(for-each delete-file (find-files "." "\\.jar$"))))
(sha256
(base32
"14bjpb0ahhaqnim8g6vs0gyd6jgnmly1amx25a0rk1a6ii2aiywn"))))
(build-system cmake-build-system)
(arguments
`(#:configure-flags
(list "-DWITH_ADE=OFF" ;we don't have a package for ade yet
"-DWITH_IPP=OFF"
"-DWITH_ITT=OFF"
"-DWITH_CAROTENE=OFF" ; only visible on arm/aarch64
"-DENABLE_PRECOMPILED_HEADERS=OFF"
"-DOPENCV_GENERATE_PKGCONFIG=ON"
;; CPU-Features:
;; See cmake/OpenCVCompilerOptimizations.cmake
;; (CPU_ALL_OPTIMIZATIONS) for a list of all optimizations
;; BASELINE is the minimum optimization all CPUs must support
;;
;; DISPATCH is the list of optional dispatches.
"-DCPU_BASELINE=SSE2"
;; Build Python bindings.
"-DBUILD_opencv_python3=ON"
,@(match (%current-system)
("x86_64-linux"
'("-DCPU_DISPATCH=NEON;VFPV3;FP16;SSE;SSE2;SSE3;SSSE3;SSE4_1;SSE4_2;POPCNT;AVX;FP16;AVX2;FMA3;AVX_512F;AVX512_SKX"
"-DCPU_DISPATCH_REQUIRE=SSE3,SSSE3,SSE4_1,SSE4_2,AVX,AVX2"))
("armhf-linux"
'("-DCPU_BASELINE_DISABLE=NEON")) ; causes build failures
("aarch64-linux"
'("-DCPU_BASELINE=NEON"
"-DCPU_DISPATCH=NEON;VFPV3;FP16"))
(_ '()))
"-DBUILD_PERF_TESTS=OFF"
"-DBUILD_TESTS=ON"
(string-append "-DOPENCV_EXTRA_MODULES_PATH=" (getcwd)
"/opencv-contrib/modules")
;;Define test data:
(string-append "-DOPENCV_TEST_DATA_PATH=" (getcwd)
"/opencv-extra/testdata")
;; Is ON by default and would try to rebuild 3rd-party protobuf,
;; which we had removed, which would lead to an error:
"-DBUILD_PROTOBUF=OFF"
;; OpenCV tries to use flatbuffers in 3rdparty which we removed
;; so for now we don't buildfor flatbuffer support
;; TODO: make OpenCV use system flatbuffers which involves
;; modifying CMake files
"-DWITH_FLATBUFFERS=OFF"
;; Rebuild protobuf files, because we have a slightly different
;; version than the included one. If we would not update, we
;; would get a compile error later:
"-DPROTOBUF_UPDATE_FILES=ON"
;; For xfeatures2d.
"-DOPENCV_SKIP_FEATURES2D_DOWNLOADING=ON")
#:phases
(modify-phases %standard-phases
(add-after 'unpack 'disable-broken-tests
(lambda _
;; This test fails with "unknown file: Failure"
;; But I couldn't figure out which file was missing:
(substitute* "../opencv-contrib/modules/face/test/test_face_align.cpp"
(("\\bcan_detect_landmarks\\b" all)
(string-append "DISABLED_" all)))
;; This all fails with a comparison between the expected 396 and
;; the actual 440 in file size.
(substitute* "modules/imgcodecs/test/test_exr.impl.hpp"
(("\\breadWrite_32FC1\\b" all)
(string-append "DISABLED_" all)))
;; These fail with protobuf parse errors that come from
;; opencv-extra/alldata.
(substitute* "modules/dnn/test/test_layers.cpp"
(("\\b(Accum|DataAugmentation|Resample|Correlation|Interp)\\b" all)
(string-append "DISABLED_" all)))
;; This test fails on x86-64, loosen the bounds.
;; Expected: (max) < (0.1), actual: 0.2 vs 0.1
(substitute* "modules/photo/test/test_hdr.cpp"
(("0\\.1\\)") "0.222)"))
,@(if (target-aarch64?)
`(;; This test fails on aarch64, loosen the bounds.
;; Expected: (max) < (0.131), actual: 0.207148 vs 0.131
(substitute* "modules/photo/test/test_hdr.cpp"
(("0\\.131") "0.222"))
;; These tests hang forever on aarch64.
(delete-file-recursively "modules/videoio/test/"))
'())
,@(if (target-riscv64?)
`(;; This test fails on riscv64, loosen the bounds.
;; Expected: (max) < (0.1), actual: 0.220829 vs 0.1
(substitute* "modules/photo/test/test_hdr.cpp"
(("0\\.1") "0.240"))
;; Expected equality of these values:
;; ellipses.size()
;; Which is: 668
;; ellipses_size
;; Which is: 2449
(substitute* "../opencv-contrib/modules/ximgproc/test/test_fld.cpp"
(("\\bManySmallCircles\\b" all)
(string-append "DISABLED_" all))))
'())))
(add-after 'unpack 'unpack-submodule-sources
(lambda* (#:key inputs #:allow-other-keys)
(mkdir "../opencv-extra")
(mkdir "../opencv-contrib")
(copy-recursively (assoc-ref inputs "opencv-extra")
"../opencv-extra")
(copy-recursively (assoc-ref inputs "opencv-contrib")
"../opencv-contrib")
;; Disable downloads of Boost and VGG descriptors as we include
;; them in native inputs.
(substitute* "../opencv-contrib/modules/xfeatures2d/CMakeLists.txt"
(("download_(boost|vgg)_descriptors") "#"))
(copy-recursively (assoc-ref inputs "opencv-3rdparty-boost")
"../downloads/xfeatures2d")
(for-each make-file-writable
(find-files "../downloads/xfeatures2d" "."))
(copy-recursively (assoc-ref inputs "opencv-3rdparty-vgg")
"../downloads/xfeatures2d")))
(add-after 'build 'do-not-install-3rdparty-file
(lambda _
(substitute* "cmake_install.cmake"
(("file\\(INSTALL .*3rdparty/include/opencl/LICENSE.txt.*")
""))))
(add-before 'check 'start-xserver
(lambda* (#:key inputs #:allow-other-keys)
(let ((xorg-server (assoc-ref inputs "xorg-server"))
(disp ":1"))
(setenv "HOME" (getcwd))
(setenv "DISPLAY" disp)
;; There must be a running X server and make check doesn't start one.
;; Therefore we must do it.
(zero? (system (format #f "~a/bin/Xvfb ~a &" xorg-server disp)))))))))
(native-inputs
`(("pkg-config" ,pkg-config)
("xorg-server" ,xorg-server-for-tests) ;For running the tests
;; These are files that are derived from the binary descriptors that
;; are part of the BinBoost package. The BinBoost package is released
;; under GPLv2+. See
;; https://www.epfl.ch/labs/cvlab/research/descriptors-and-keypoints/research-detect-binboost/
;; See xfeatures2d/cmake/download_boostdesc.cmake for commit hash.
("opencv-3rdparty-boost"
,(let ((commit "34e4206aef44d50e6bbcd0ab06354b52e7466d26"))
(origin
(method git-fetch)
(uri (git-reference (url "https://github.com/opencv/opencv_3rdparty")
(commit commit)))
(file-name (git-file-name "opencv_3rdparty" commit))
(sha256
(base32
"13yig1xhvgghvxspxmdidss5lqiikpjr0ddm83jsi0k85j92sn62")))))
;; These are the Visual Geometry Group descriptors, released under
;; BSD-3. They are generated files produced by the DLCO framework.
;; See xfeatures2d/cmake/download_vgg.cmake for commit hash.
("opencv-3rdparty-vgg"
,(let ((commit "fccf7cd6a4b12079f73bbfb21745f9babcd4eb1d"))
(origin
(method git-fetch)
(uri (git-reference (url "https://github.com/opencv/opencv_3rdparty")
(commit commit)))
(file-name (git-file-name "opencv_3rdparty" commit))
(sha256
(base32
"0r9fam8dplyqqsd3qgpnnfgf9l7lj44di19rxwbm8mxiw0rlcdvy")))))
("opencv-extra"
,(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/opencv/opencv_extra")
(commit version)))
(file-name (git-file-name "opencv_extra" version))
(sha256
(base32
"11y9b35j74gg4gqll4v366qmhvjkcqml45khiajd8zsk1fraf70l"))))
("opencv-contrib"
,(origin
(method git-fetch)
(uri (git-reference (url "https://github.com/opencv/opencv_contrib")
(commit version)))
(file-name (git-file-name "opencv_contrib" version))
(sha256
(base32
"16crcca9r4y4rby0dqdhc06qi84hjk6qxy2sql2dhh35hfs856rr"))))))
(inputs
(list eigen
ffmpeg-4
;; TODO: add gstreamer
gtk+
gtkglext
hdf5
ilmbase
imath ;should be propagated by openexr
jasper
libgphoto2
libjpeg-turbo
libpng
libtiff
libwebp
openblas
opencl-headers
openexr
openmpi
openjpeg
protobuf
python
python-numpy
vtk
zlib))
;; These three CVEs are not a problem of OpenCV, see:
;; https://github.com/opencv/opencv/issues/10998
(properties '((lint-hidden-cve . ("CVE-2018-7712"
"CVE-2018-7713"
"CVE-2018-7714"))))
(synopsis "Computer vision library")
(description "OpenCV is a library aimed at real-time computer vision,
including several hundred computer vision algorithms. It can be used to do
things like:
@itemize
@item image and video input and output
@item image and video processing
@item displaying
@item feature recognition
@item segmentation
@item facial recognition
@item stereo vision
@item structure from motion
@item augmented reality
@item machine learning
@end itemize\n
This package includes the Python bindings for OpenCV, which are also known as
the OpenCV-Python library.")
(home-page "https://opencv.org/")
(license license:bsd-3)))
(define-public vips
(package
(name "vips")
(version "8.13.1")
(source
(origin
(method url-fetch)
(uri (string-append
"https://github.com/libvips/libvips/releases/download/v"
version "/vips-" version ".tar.gz"))
(sha256
(base32 "00kp3439jcqv9l2gcjg88xzvlq8clv54z1m3x66i3chvarz7ndxd"))))
(build-system gnu-build-system)
(native-inputs
(list gobject-introspection pkg-config))
(inputs
(list expat
fftw
giflib
glib
hdf5
imagemagick
lcms
libexif
libgsf
libjpeg-turbo
libpng
(librsvg-for-system)
libtiff
libxml2
libwebp
matio
niftilib
openexr-2
orc
pango
poppler))
(home-page "https://libvips.github.io/libvips/")
(synopsis "Multithreaded image processing system with low memory needs")
(description
"VIPS is a demand-driven, horizontally threaded image processing library.
It's particularly good at processing large images, working with colour,
scientific analysis, and general research & development.
Compared to most image processing libraries VIPS needs little RAM and runs
quickly, especially on machines with more than one CPU core. This is primarily
due to its architecture which automatically parallelises the image workflows.")
(license license:lgpl2.1+)))
(define-public gmic
(package
(name "gmic")
(version "3.0.0")
(source
(origin
(method url-fetch)
(uri (string-append "https://gmic.eu/files/source/gmic_"
version ".tar.gz"))
(sha256
(base32 "080inz0wisv3rhvbnzrgcs3j25wq86gybp68yi56gw6vwswnn19z"))))
(build-system cmake-build-system)
(arguments
`(#:tests? #f ;there are no tests
#:configure-flags '("-DBUILD_LIB_STATIC=OFF"
"-DENABLE_DYNAMIC_LINKING=ON"
"-DENABLE_LTO=ON")
#:phases
(modify-phases %standard-phases
(add-before 'configure 'set-LDFLAGS
(lambda* (#:key inputs outputs #:allow-other-keys)
(setenv "LDFLAGS"
(string-append
"-Wl,-rpath="
(assoc-ref outputs "out") "/lib")))))))
(native-inputs
(list pkg-config))
(inputs
(list curl
fftw
graphicsmagick
imath
libjpeg-turbo
libpng
libtiff
libx11
;;opencv ;OpenCV is currently broken in the CI
openexr
zlib))
(home-page "https://gmic.eu/")
(synopsis "Full-featured framework for digital image processing")
(description "G'MIC is a full-featured framework for digital image
processing. It provides several user interfaces to convert / manipulate
/ filter / visualize generic image datasets, ranging from 1D scalar
signals to 3D+t sequences of multi-spectral volumetric images, hence
including 2D color images.")
;; Dual-licensed, either license applies.
(license (list license:cecill license:cecill-c))))
(define-public gmic-qt
(package
(inherit gmic)
(name "gmic-qt")
(arguments
(substitute-keyword-arguments (package-arguments gmic)
((#:configure-flags _)
`(list "-DGMIC_QT_HOST=none" "-DENABLE_DYNAMIC_LINKING=ON"
(string-append "-DGMIC_LIB_PATH="
(assoc-ref %build-inputs "gmic") "/lib")))
((#:phases phases)
`(modify-phases ,phases
(add-after 'unpack 'qt-chdir
(lambda _ (chdir "gmic-qt") #t))))))
(native-inputs
(list pkg-config qttools-5))
(inputs
(modify-inputs (package-inputs gmic)
(prepend gmic qtbase-5)))
(synopsis "Qt frontend for the G'MIC image processing framework")
(license license:gpl3+)))
(define-public gmic-qt-krita
(package
(inherit gmic-qt)
(name "gmic-qt-krita")
(arguments
(substitute-keyword-arguments (package-arguments gmic-qt)
((#:configure-flags flags)
'(list "-DGMIC_QT_HOST=krita" "-DENABLE_DYNAMIC_LINKING=ON"
(string-append "-DGMIC_LIB_PATH="
(assoc-ref %build-inputs "gmic") "/lib")))))
(synopsis "Krita plugin for the G'MIC image processing framework")))
(define-public gmic-qt-gimp
(package
(inherit gmic-qt)
(name "gmic-qt-gimp")
(inputs
;; GIMP and its dependencies.
(modify-inputs (package-inputs gmic-qt)
(prepend gimp gdk-pixbuf cairo gegl)))
(arguments
(substitute-keyword-arguments (package-arguments gmic-qt)
((#:configure-flags flags)
'(list "-DGMIC_QT_HOST=gimp" "-DENABLE_DYNAMIC_LINKING=ON"
(string-append "-DGMIC_LIB_PATH="
(assoc-ref %build-inputs "gmic") "/lib")))))
(synopsis "GIMP plugin for the G'MIC image processing framework")))
(define-public nip2
(package
(name "nip2")
(version "8.7.1")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/libvips/nip2/releases/download/v"
version "/nip2-" version ".tar.gz" ))
(sha256
(base32 "0l7n427njif53npqn02gfjjly8y3khbrkzqxp10j5vp9h97psgiw"))))
(build-system gnu-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
;; test_conv.ws keep failing so disabling for now.
(add-after 'unpack 'disable-test-conv
(lambda _
(delete-file "test/workspaces/test_conv.ws")
#t))
(add-before 'check 'set-home
(lambda _
(setenv "HOME" "/tmp") #t)))))
(inputs
(list vips
glib
libtiff
gtk+-2
libxml2
libexif
libjpeg-turbo ;required by vips.pc
(librsvg-for-system)
fftw
libgsf
imagemagick
orc
matio
lcms
libwebp
openexr-2
poppler
gsl))
(native-inputs
(list flex bison pkg-config))
(home-page "https://github.com/libvips/nip2")
(synopsis "Spreadsheet-like GUI for libvips")
(description "This package provide a graphical user interface (GUI) for
the VIPS image processing library. It's a little like a spreadsheet: you
create a set of formula connecting your objects together, and on a change nip2
recalculates.")
(license license:gpl2+)))
(define-public paraview
(package
(name "paraview")
(version "5.11.1")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://gitlab.kitware.com/paraview/paraview.git")
(commit (string-append "v" version))
(recursive? #t)))
(file-name (git-file-name name version))
(sha256
(base32 "0m1lgkl95f0pyhxp97gq2rf8hibv39v4c49imfj1va40z0flvard"))
(modules '((guix build utils)))
(snippet
;; TODO: Also remove unused bundled libraries and plugins?
#~(begin
;; Remove bundled ParaView libraries which are available in Guix
;; or undesired.
(for-each (lambda (dir)
(delete-file-recursively
(string-append "ThirdParty/" dir "/vtk"
(string-downcase dir))))
'(;;"CosmoHaloFinder"
;;"IceT"
"NvPipe" ; Don't want NvPipe support
;;"QtTesting"
;;"cinema"
;;"cinemasci"
"protobuf"))
;; Remove undesired ParaView plugins.
(delete-file-recursively "Plugins/pvNVIDIAIndeX")
;; Remove bundled VTK libraries which are available in Guix.
(for-each (lambda (dir)
(delete-file-recursively
(string-append "VTK/ThirdParty/" dir "/vtk" dir)))
'(;;"cgns"
"cli11"
;;"diy2"
"doubleconversion"
"eigen"
;;"exodusII"
"expat"
;;"exprtk"
;;"fides"
"fmt"
"freetype"
"gl2ps"
"glew"
;;"h5part"
"hdf5"
;;"ioss"
"jpeg"
"jsoncpp"
;;"kissfft"
;;"libharu" ; Requires some PRs applied to 2.3.0
"libproj"
"libxml2"
;;"loguru"
"lz4"
"lzma"
"mpi4py"
"netcdf"
"nlohmannjson"
"ogg"
;;"pegtl"
"png"
"pugixml"
"sqlite"
"theora"
"tiff"
"utf8"
;;"verdict"
;;"vpic"
;;"vtkm"
;;"xdmf2"
;;"xdmf3"
;;"zfp"
"zlib"))))))
(build-system qt-build-system)
(arguments
(list
#:build-type "Release" ; 542 MiB in release mode
#:tests? #f ; Downloads test data
#:configure-flags
#~(let ((doc (string-append #$output "/share/doc/" #$name "-" #$version)))
(list
(string-append "-DCMAKE_INSTALL_DOCDIR=" doc) ; For paraview.qch
;; ParaView build options
"-DPARAVIEW_BUILD_DEVELOPER_DOCUMENTATION=ON"
(string-append "-DPARAVIEW_GENERATED_DOCUMENTATION_OUTPUT_DIRECTORY=" doc)
;; ParaView capability options
;;"-DPARAVIEW_USE_EXTERNAL_VTK=ON" ; Unsupported by ParaView
"-DPARAVIEW_USE_MPI=ON"
"-DPARAVIEW_USE_PYTHON=ON"
"-DPARAVIEW_USE_QTWEBENGINE=ON"
;; ParaView features
;;
;; Enable those that are disabled by default.
;; Commented means the dependencies are missing from Guix
;; (or are otherwise described).
;;"-DPARAVIEW_ENABLE_ADIOS2=ON"
;;"-DPARAVIEW_ENABLE_COSMOTOOLS=ON"
;;"-DPARAVIEW_ENABLE_CATALYST=ON"
"-DPARAVIEW_ENABLE_FFMPEG=ON"
;;"-DPARAVIEW_ENABLE_FIDES=ON"
"-DPARAVIEW_ENABLE_GDAL=ON"
;;"-DPARAVIEW_ENABLE_LAS=ON"
;;"-DPARAVIEW_ENABLE_LOOKINGGLASS=ON" ; Downloads dependency
;;"-DPARAVIEW_ENABLE_MOMENTINVARIANTS=ON" ; Downloads dependency
"-DPARAVIEW_ENABLE_MOTIONFX=ON"
;;"-DPARAVIEW_ENABLE_OPENTURNS=ON"
;;"-DPARAVIEW_ENABLE_OPENVDB=ON" ; Dependency not found
;;"-DPARAVIEW_ENABLE_PDAL=ON"
;;"-DPARAVIEW_ENABLE_RAYTRACING=ON"
"-DPARAVIEW_ENABLE_VISITBRIDGE=ON"
"-DPARAVIEW_ENABLE_XDMF3=ON"
;; ParaView miscellaneous options
;;
;; Without -DPARAVIEW_DATA_EXCLUDE_FROM_ALL=OFF, test data is
;; downloaded even with tests disabled.
"-DPARAVIEW_VERSIONED_INSTALL=OFF"
"-DPARAVIEW_DATA_EXCLUDE_FROM_ALL=OFF"
;; ParaView plugins
;;
;; Enable those that are disabled by default.
;; Commented means the dependencies are missing from Guix
;; (or are otherwise described).
;;"-DPARAVIEW_PLUGIN_ENABLE_AdiosReaderPixie=ON"
;;"-DPARAVIEW_PLUGIN_ENABLE_AdiosReaderStaging=ON"
"-DPARAVIEW_PLUGIN_ENABLE_CAVEInteraction=ON"
;;"-DPARAVIEW_PLUGIN_ENABLE_CDIReader=ON"
"-DPARAVIEW_PLUGIN_ENABLE_GeographicalMap=ON"
"-DPARAVIEW_PLUGIN_ENABLE_GmshIO=ON"
"-DPARAVIEW_PLUGIN_ENABLE_InSituExodus=ON"
;;"-DPARAVIEW_PLUGIN_ENABLE_LookingGlass=ON"
"-DPARAVIEW_PLUGIN_ENABLE_NetCDFTimeAnnotationPlugin=ON"
;;"-DPARAVIEW_PLUGIN_ENABLE_ParFlow=ON" ; Build fails
;;"-DPARAVIEW_PLUGIN_ENABLE_PythonQtPlugin=ON"
"-DPARAVIEW_PLUGIN_ENABLE_SpaceMouseInteractor=ON"
;;"-DPARAVIEW_PLUGIN_ENABLE_VDFReaderPlugin=ON"
;;"-DPARAVIEW_PLUGIN_ENABLE_XRInterface=ON" ; Build fails
;;"-DPARAVIEW_PLUGIN_ENABLE_zSpace=ON"
;; VTK options
"-DVTK_SMP_IMPLEMENTATION_TYPE=TBB"
"-DVTKm_ENABLE_MPI=ON"
;; External libraries for ParaView and VTK
"-DVTK_MODULE_USE_EXTERNAL_ParaView_protobuf=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_cli11=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_doubleconversion=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_eigen=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_expat=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_fmt=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_freetype=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_gl2ps=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_glew=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_hdf5=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_jpeg=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_jsoncpp=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_libproj=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_libxml2=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_lz4=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_lzma=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_mpi4py=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_netcdf=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_nlohmannjson=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_ogg=ON"
;;"-DVTK_MODULE_USE_EXTERNAL_VTK_pegtl=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_png=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_pugixml=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_sqlite=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_theora=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_tiff=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_utf8=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_zlib=ON"))
#:phases
#~(modify-phases %standard-phases
(add-after 'set-paths 'hide-gfortran
(lambda _
(setenv "CPLUS_INCLUDE_PATH"
(string-join
(delete (string-append #$(this-package-native-input "gfortran")
"/include/c++")
(string-split (getenv "CPLUS_INCLUDE_PATH") #\:))
":"))))
(replace 'install-license-files
(lambda _
(let ((src (string-append #$output "/share/licenses/ParaView"))
(dst (string-append #$output "/share/doc/"
#$name "-" #$version "/licenses")))
(copy-recursively src dst)
(delete-file-recursively (dirname src))))))))
(native-inputs
(list gfortran
;; For the documentation
doxygen
graphviz
perl
python-sphinx))
(inputs
(list boost
cli11
curl
double-conversion
eigen
expat
ffmpeg
fmt
freetype
gdal
gl2ps
glew
gmsh
hdf5
nlohmann-json ;For ParFlow; build fails
jsoncpp
libjpeg-turbo
libogg
libpng
libtheora
libtiff
libxcursor
libxml2
libxt
lz4
lzip
mesa
netcdf
openmpi
;;openvdb ;For OpenVDB; dependency not found
;;openvr ;For XRInterface; build fails
;;pegtl ;For VTK; build fails
proj
protobuf
pugixml
python-cftime
python-matplotlib
python-mpi4py
python-numpy
python-wrapper
qtbase-5
qtdeclarative-5
qtmultimedia-5
qtsvg-5
qttools-5
qtwebchannel-5
qtwebengine-5
qtx11extras
qtxmlpatterns
sdl2
sqlite
tbb
utfcpp
zlib))
(home-page "https://www.paraview.org/")
(synopsis "VTK-based, parallel data analyzer and visualizer")
(description "ParaView is a VTK-based, parallel data analyzer and
visualizer which allows exploring data interactively in 3D or
programmatically.")
(license license:bsd-3)))
(define-public vxl
(package
(name "vxl")
(version "2.0.2")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/vxl/vxl")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "0949hw57szq8943f1whwqaz591xjmb19kj803hcv74hdai2b0ycg"))
(modules '((guix build utils)))
;; TODO: vxl includes an old version of dcmtk. It won't build with
;; version 3.6.x.
(snippet
'(begin
(for-each delete-file-recursively
'("v3p/bzlib/"
"v3p/geotiff/"
"v3p/jpeg/"
"v3p/png/"
"v3p/tiff/"
"v3p/zlib/"))
(substitute* "v3p/CMakeLists.txt"
(("add_subdirectory\\((tiff|png|jpeg|zlib|bzlib|geotiff)\\)")
""))
#t))))
(build-system cmake-build-system)
(inputs
(list libgeotiff libtiff libjpeg-turbo libpng zlib))
(home-page "https://github.com/vxl/vxl/")
(synopsis "Collection of C++ libraries for computer vision")
(description "VXL (the Vision-something-Libraries) is a collection of C++
libraries designed for computer vision research and implementation.")
(license license:bsd-3)))
(define-public vxl-1
(package (inherit vxl)
(name "vxl")
(version "1.18.0")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/vxl/vxl")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "1g4mr2cc58jwm0vasscbd4y5380wj3ahkvq121z4gs83fhavvxgz"))
(modules '((guix build utils)))
(snippet
'(begin
(for-each delete-file-recursively
'("v3p/bzlib/"
"v3p/geotiff/"
"v3p/png/"
"v3p/tiff/"
"v3p/zlib/"))
(substitute* "v3p/CMakeLists.txt"
(("add_subdirectory\\((tiff|png|jpeg|zlib|bzlib|geotiff)\\)")
""))
#t))))
(arguments
`(#:configure-flags
;; Needed for itk-snap
(list "-DVNL_CONFIG_LEGACY_METHODS=ON")))))
(define-public insight-toolkit
(package
(name "insight-toolkit")
(version "5.0.0")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/InsightSoftwareConsortium/ITK/"
"releases/download/v" version "/InsightToolkit-"
version ".tar.xz"))
(sha256
(base32 "0bs63mk4q8jmx38f031jy5w5n9yy5ng9x8ijwinvjyvas8cichqi"))))
(build-system cmake-build-system)
(arguments
(list #:tests? #f ; tests require network access and external data
#:configure-flags #~'("-DITK_USE_GPU=ON"
"-DITK_USE_SYSTEM_LIBRARIES=ON"
"-DITK_USE_SYSTEM_GOOGLETEST=ON"
"-DITK_BUILD_SHARED=ON"
;; This prevents "GTest::GTest" from being added to the ITK_LIBRARIES
;; variable in the installed CMake files. This is necessary as other
;; packages using insight-toolkit could not be configured otherwise.
"-DGTEST_ROOT=gtest"
"-DCMAKE_CXX_STANDARD=17")
#:phases #~(modify-phases %standard-phases
(add-after 'unpack 'do-not-tune
(lambda _
(substitute* "CMake/ITKSetStandardCompilerFlags.cmake"
(("-mtune=native")
"")))))))
(inputs
(list eigen
expat
fftw
fftwf
hdf5
libjpeg-turbo
libpng
libtiff
mesa-opencl
perl
python
tbb
vxl-1
zlib))
(native-inputs
(list googletest pkg-config))
;; The 'CMake/ITKSetStandardCompilerFlags.cmake' file normally sets
;; '-mtune=native -march=corei7', suggesting there's something to be
;; gained from CPU-specific optimizations.
(properties '((tunable? . #t)))
(home-page "https://github.com/InsightSoftwareConsortium/ITK/")
(synopsis "Scientific image processing, segmentation and registration")
(description "The Insight Toolkit (ITK) is a toolkit for N-dimensional
scientific image processing, segmentation, and registration. Segmentation is
the process of identifying and classifying data found in a digitally sampled
representation. Typically the sampled representation is an image acquired
from such medical instrumentation as CT or MRI scanners. Registration is the
task of aligning or developing correspondences between data. For example, in
the medical environment, a CT scan may be aligned with a MRI scan in order to
combine the information contained in both.")
(license license:asl2.0)))
(define-public insight-toolkit-4
(package (inherit insight-toolkit)
(version "4.13.2")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/InsightSoftwareConsortium/ITK/"
"releases/download/v" version "/InsightToolkit-"
version ".tar.xz"))
(sha256
(base32 "19cgfpd63gqrvc3m27m394gy2d7w79g5y6lvznb5qqr49lihbgns"))))
(arguments
(list #:tests? #f ; tests require network access and external data
#:configure-flags #~'("-DITKV3_COMPATIBILITY=ON" ; needed for itk-snap
"-DITK_USE_GPU=ON"
"-DITK_USE_SYSTEM_LIBRARIES=ON"
"-DITK_USE_SYSTEM_GOOGLETEST=ON"
"-DITK_USE_SYSTEM_VXL=ON")))))
(define-public insight-toolkit-4.12
(package (inherit insight-toolkit-4)
(version "4.12.2")
(source
(origin
(method url-fetch)
(uri (string-append "mirror://sourceforge/itk/itk/4.12/"
"InsightToolkit-" version ".tar.xz"))
(sha256
(base32 "1qw9mxbh083siljygahl4gdfv91xvfd8hfl7ghwii19f60xrvn2w"))))))
(define-public itk-snap
(package
(name "itk-snap")
(version "3.8.0")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://git.code.sf.net/p/itk-snap/src")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "15i5ixpryfrbf3vrrb5rici8fb585f25k0v1ljds16bp1f1msr4q"))
(patches (search-patches "itk-snap-alt-glibc-compat.patch"))))
(build-system cmake-build-system)
(arguments
`(#:configure-flags
(list "-DSNAP_VERSION_GIT_SHA1=release"
"-DSNAP_VERSION_GIT_BRANCH=release"
"-DSNAP_VERSION_GIT_TIMESTAMP=0"
"-DSNAP_PACKAGE_QT_PLUGINS=OFF"
"-DCMAKE_POSITION_INDEPENDENT_CODE=ON")
#:phases
(modify-phases %standard-phases
;; During the installation phase all libraries provided by all
;; dependencies will be copied to the lib directory. That's insane,
;; so we disable this.
(add-after 'unpack 'do-not-copy-dependencies
(lambda _
(substitute* "CMakeLists.txt"
(("install_qt5_executable\
\\(\\$\\{SNAP_MAIN_INSTALL_DIR\\}/\\$\\{SNAP_EXE\\}\\)")
""))))
(add-after 'unpack 'disable-gui-tests
(lambda _
;; The GUI tests just time out.
(substitute* "CMakeLists.txt"
((" (Workspace|DiffSpace|ProbeIntensity|RegionCompetition\
|RandomForest|RandomForestBailOut)")
""))))
(add-after 'unpack 'make-reproducible
(lambda _
(substitute* "CMakeLists.txt"
(("TODAY\\(SNAP_VERSION_COMPILE_DATE\\)")
"SET(SNAP_VERSION_COMPILE_DATE \"(removed for reproducibility)\")"))))
(add-after 'unpack 'prepare-submodules
(lambda* (#:key inputs #:allow-other-keys)
(rmdir "Submodules/c3d")
(copy-recursively (assoc-ref inputs "c3d-src")
"Submodules/c3d")
(substitute* '("Submodules/c3d/adapters/BiasFieldCorrectionN4.cxx"
"Submodules/c3d/adapters/ApplyMetric.cxx")
(("vcl_") "std::"))
(rmdir "Submodules/greedy")
(symlink (assoc-ref inputs "greedy-src")
"Submodules/greedy")))
(add-after 'unpack 'fix-includes
(lambda _
(substitute* "GUI/Model/RegistrationModel.cxx"
(("<vnl_symmetric_eigensystem.h>")
"<vnl/algo/vnl_symmetric_eigensystem.h>"))))
(add-before 'check 'prepare-tests
(lambda _
;; Needed by at least one test.
(setenv "HOME" "/tmp")))
(add-after 'install 'wrap-executable
(lambda* (#:key inputs outputs #:allow-other-keys)
(let ((out (assoc-ref outputs "out")))
(wrap-program (string-append out "/bin/itksnap")
`("QT_PLUGIN_PATH" ":" prefix
,(map (lambda (label)
(string-append (assoc-ref inputs label)
"/lib/qt5/plugins"))
'("qtbase" "qtdeclarative-5"))))))))))
(inputs
(list bash-minimal
curl
fftw
fftwf
glu
hdf5
mesa-opencl
;; This package does not build with either insight-toolkit 5.0.0
;; and not with 4.13. It really needs to be 4.12.
insight-toolkit-4.12
vtk-7
qtbase-5
qtdeclarative-5
vxl-1
zlib))
(native-inputs
`(("googletest" ,googletest)
("qttools-5" ,qttools-5)
("pkg-config" ,pkg-config)
("c3d-src"
,(let* ((commit "f521358db26e00002c911cc47bf463b043942ad3")
(revision "1")
(version (git-version "0" revision commit)))
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/pyushkevich/c3d")
(commit commit)))
(file-name (git-file-name "c3d" version))
(sha256
(base32
"0kyv3rxrxwr8c3sa9zv01lsnhk95b27gx1s870k3yi8qp52h7bx3")))))
;; We are using an arbitrary commit from 2017 because the latest
;; version breaks the build...
("greedy-src"
,(let* ((commit "97e340f7e8e66597599144947775e6039e79a0d3")
(revision "1")
(version (git-version "0" revision commit)))
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/pyushkevich/greedy")
(commit commit)))
(file-name (git-file-name "greedy" version))
(sha256
(base32
"0k5bc9za4jrc8z9dj08z1rkcp5xf0gnd1d2jmi1w9ny4vxh2q2ab")))))))
(home-page "https://sourceforge.net/p/itk-snap/")
(synopsis "Medical image segmentation")
(description "ITK-SNAP is a tool for segmenting anatomical structures in
medical images. It provides an automatic active contour segmentation
pipeline, along with supporting a manual segmentation toolbox. ITK-SNAP has a
full-featured UI aimed at clinical researchers.")
;; This includes the submodules greedy and c3d.
(license license:gpl3+)))
(define-public metapixel
;; Follow stable branch.
(let ((commit "98ee9daa093b6c334941242e63f90b1c2876eb4f"))
(package
(name "metapixel")
(version (git-version "1.0.2" "1" commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/schani/metapixel")
(commit commit)
;; TODO: Package rwimg and lispreader?
(recursive? #t)))
(file-name (git-file-name name version))
(sha256
(base32 "0r7n3a6bvcxkbpda4mwmrpicii09iql5z69nkjqygkwxw7ny3309"))))
(build-system gnu-build-system)
(arguments
(list
#:tests? #f ; No tests.
#:make-flags
#~(list
(string-append "PREFIX=" #$output)
(format #f "MANPAGE_XSL=~a/xml/xsl/~a-~a/manpages/docbook.xsl"
#$(this-package-native-input "docbook-xsl")
#$(package-name
(this-package-native-input "docbook-xsl"))
#$(package-version
(this-package-native-input "docbook-xsl"))))
#:phases
#~(modify-phases %standard-phases
(delete 'configure)
(add-before 'install 'fix-directory-creation
(lambda _
(mkdir-p (string-append #$output "/share/man/man1")))))))
(inputs
(list giflib libjpeg-turbo libpng
perl))
(native-inputs
(list docbook-xml-4.2 docbook-xsl
libxslt pkg-config))
(home-page "https://www.complang.tuwien.ac.at/schani/metapixel/")
(synopsis "Photomosaics generator")
(description "Metapixel is a program for generating photomosaics. It can
generate classical photomosaics, in which the source image is viewed as a
matrix of equally sized rectangles for each of which a matching image is
substituted, as well as collage-style photomosaics, in which rectangular parts
of the source image at arbitrary positions (i.e. not aligned to a matrix) are
substituted by matching images.")
(license license:gpl2))))
(define-public scantailor-advanced
(let ((commit "3d1e74e6ace413733511086934a66f4e3f7a6027"))
(package
(name "scantailor-advanced")
(version (string-append "1.0.16-" (string-take commit 7)))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/4lex4/scantailor-advanced")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"0kixwjb2x457dq7927hkh34c803p7yh1pmn6n61rk9shqrcg492h"))))
(build-system qt-build-system)
(native-inputs
(list qttools-5))
(inputs
`(("boost" ,boost)
("libjpeg" ,libjpeg-turbo)
("libpng" ,libpng)
("libtiff" ,libtiff)
("qtbase" ,qtbase-5)
("qtsvg-5" ,qtsvg-5)
("zlib" ,zlib)))
(arguments
`(#:phases
(modify-phases %standard-phases
;; Some tests require a display and fail with offscreen mode.
(add-after 'unpack 'disable-failing-tests
(lambda _
(setenv "ARGS" "--exclude-regex \"imageproc_.*\"")
#t)))))
(home-page "https://github.com/4lex4/scantailor-advanced")
(synopsis "Clean up scanned pages")
(description "Scan Tailor is an interactive post-processing tool for
scanned pages. It performs operations such as page splitting, deskewing,
adding/removing borders, and others. You give it raw scans, and you get pages
ready to be printed or assembled into a PDF or DJVU file. Scanning, optical
character recognition, and assembling multi-page documents are out of scope of
this project.
Scan Tailer Advanced is a fork of Scan Tailer that merges Scan Tailor Featured
and Scan Tailor Enhanced versions as well as including many more bug fixes.")
(license license:gpl3+))))
(define-public stiff
(package
(name "stiff")
(version "2.4.0")
(source
(origin
(method url-fetch)
(uri (string-append "https://www.astromatic.net/download/stiff/stiff-"
version ".tar.gz"))
(sha256
(base32 "14m92dskzw7bwsr64ha4p0mj3ndv13gwcbfic3qxrs3zq5353s7l"))))
(build-system gnu-build-system)
(inputs
(list libtiff zlib libjpeg-turbo))
(home-page "https://www.astromatic.net/software/stiff")
(synopsis "Convert scientific FITS images to TIFF format")
(description
"STIFF is a program that converts scientific @acronym{FITS, Flexible Image
Transport System} images to the more popular TIFF format for illustration
purposes.")
(license license:gpl3+)))
(define-public python-imgviz
(package
(name "python-imgviz")
(version "1.2.6")
(source
(origin
;; PyPi tarball lacks tests.
(method git-fetch)
(uri (git-reference
(url "https://github.com/wkentaro/imgviz.git")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "1bm0wdv5p26i8nl4kx3145cz553v401sgbpgc96sddzjfmfiydcw"))))
(build-system python-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(replace 'check
(lambda* (#:key inputs outputs tests? #:allow-other-keys)
(when tests?
(add-installed-pythonpath inputs outputs)
(invoke "pytest" "-v" "tests"))
#t)))))
(propagated-inputs
(list python-matplotlib python-numpy python-pillow python-pyyaml))
(native-inputs (list python-pytest))
(home-page "http://github.com/wkentaro/imgviz")
(synopsis "Image Visualization Tools")
(description "Python library for object detection, semantic and instance
segmentation.")
(license license:expat)))
(define-public labelme
(package
(name "labelme")
(version "4.5.13")
(source
(origin
;; PyPi tarball lacks tests.
(method git-fetch)
(uri (git-reference
(url "https://github.com/wkentaro/labelme.git")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "0cmi2xb4dgh7738l259rgwhn9l134f0vnaaqc2gflc5yr3lqhrv2"))))
(build-system python-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'loosen-requirements
(lambda _
;; Don't require an outdated version of matplotlib.
(substitute* "setup.py"
(("matplotlib<3\\.3")
"matplotlib"))))
(add-before 'check 'start-xserver
(lambda* (#:key inputs #:allow-other-keys)
(let ((xorg-server (assoc-ref inputs "xorg-server")))
;; Options taken from CI workflow.
(system (string-append xorg-server "/bin/Xvfb :99 -screen 0 "
"1920x1200x24 -ac +extension GLX +render "
"-noreset &"))
(setenv "DISPLAY" ":99.0"))))
(replace 'check
(lambda* (#:key inputs outputs tests? #:allow-other-keys)
(when tests?
(add-installed-pythonpath inputs outputs)
;; Fails when invoking help2man for unknown reason.
(delete-file "tests/docs_tests/man_tests/test_labelme_1.py")
;; One test hangs.
(delete-file "tests/labelme_tests/widgets_tests/test_label_dialog.py")
;; Calls incompatible function signatures.
(delete-file "tests/labelme_tests/widgets_tests/test_label_list_widget.py")
(setenv "MPLBACKEND" "agg")
(invoke "pytest" "-v" "tests" "-m" "not gpu")))))))
(propagated-inputs
(list python-imgviz
python-matplotlib
python-numpy
python-pillow
python-pyyaml
python-qtpy
python-termcolor))
(native-inputs
(list python-pytest python-pytest-qt xorg-server-for-tests))
(home-page "https://github.com/wkentaro/labelme")
(synopsis
"Image Polygonal Annotation")
(description
"Image and video labeling tool supporting different shapes like
polygons, rectangles, circles, lines, points and VOC/COCO export.")
(license license:gpl3+)))
(define-public charls
(package
(name "charls")
(version "2.3.4")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/team-charls/charls/")
(commit (string-append version))))
(file-name (git-file-name name version))
(sha256
(base32
"0g3f1rfimk30rqmi7ic4i5vfphyqbbpsyyhwqq1iss9wjwaz2vs5"))))
(build-system cmake-build-system)
(arguments
`(#:configure-flags '("-DCMAKE_BUILD_TYPE:STRING=Release"
"-DBUILD_SHARED_LIBS=On")))
(native-inputs (list git pkg-config))
(home-page "https://github.com/team-charls/charls")
(synopsis "Library for using JPEG-LS compliant images")
(description
"CharLS is a codec library that can be used to build applications that
can handle JPEG-LS compliant images. In the application you are writing you
can call the CharLS codec and pass it images (sometimes called raster bitmaps),
to have them encoded to JPEG-LS, or JPEG-LS streams, which CharLS will decode
to images.")
(license license:bsd-3)))
(define-public libansilove
(package
(name "libansilove")
(version "1.4.1")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/ansilove/libansilove")
(commit (string-append version))))
(file-name (git-file-name name version))
(sha256
(base32
"169njlck4a2bmf1kmjas1w594hyda543ykdnwg7fwkviij39l9z6"))))
(build-system cmake-build-system)
(arguments
(list #:tests? #f)) ; No tests included
(native-inputs
(list gd))
(home-page "https://www.ansilove.org/")
(synopsis "Library for converting ANSI, ASCII, and other formats to PNG")
(description
"libansilove is a library for converting artscene file types to PNG images,
including ANSI (.ANS) and many others. The library primarily serves to support
the ansilove tool.")
(license license:bsd-2)))
(define-public ansilove
(package
(name "ansilove")
(version "4.2.0")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/ansilove/ansilove")
(commit (string-append version))))
(file-name (git-file-name name version))
(sha256
(base32
"1h9r759krjl8wi68yxs1d46qfrx6v89a8vmmv3aqym8vn9x430kh"))))
(build-system cmake-build-system)
(native-inputs
(list libansilove))
(home-page "https://www.ansilove.org/")
(synopsis "ANSI and ASCII art to PNG converter")
(description
"AnsiLove is an ANSI and ASCII art to PNG converter, allowing to convert
ANSI and artscene-related file formats into PNG images, supporting ANSI (.ANS),
PCBoard (.PCB), Binary (.BIN), Artworx (.ADF), iCE Draw (.IDF), Tundra (.TND)
and XBin (.XB) formats.")
(license license:bsd-2)))
|