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| author | Ricardo Wurmus <rekado@elephly.net> | 2021-10-18 12:28:55 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2021-10-18 15:38:08 +0200 |
| commit | 332177cd2d2da48d1a1f19671cb87e22adbf1f08 (patch) | |
| tree | cdbd10c39204a31330923f06dba1bbf06baa923c | |
| parent | 88badc074a5dbebf80115918cf6c0009075154d2 (diff) | |
gnu: Add r-seuratdisk.
* gnu/packages/cran.scm (r-seuratdisk): New variable.
| -rw-r--r-- | gnu/packages/cran.scm | 43 |
1 files changed, 43 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 937f53784e..09023a4c79 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -28581,6 +28581,49 @@ algorithms; density clustering, hierarchical clustering, k-means, and the discovery of differentially expressed genes and markers.") (license license:gpl3))) +(define-public r-seuratdisk + (let ((commit "163f1aade5bac38ed1e9e9c912283a7e74781610") + (revision "1")) + (package + (name "r-seuratdisk") + (version (git-version "0.0.0.9019" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/mojaveazure/seurat-disk") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1d1v8qi6kknzy5fj6bl8akwy74h5h143i00lyidsnqjbwp9n4qnw")))) + (properties `((upstream-name . "SeuratDisk"))) + (build-system r-build-system) + (propagated-inputs + `(("r-cli" ,r-cli) + ("r-crayon" ,r-crayon) + ("r-hdf5r" ,r-hdf5r) + ("r-matrix" ,r-matrix) + ("r-r6" ,r-r6) + ("r-rlang" ,r-rlang) + ("r-seurat" ,r-seurat) + ("r-seuratobject" ,r-seuratobject) + ("r-stringi" ,r-stringi) + ("r-withr" ,r-withr))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/mojaveazure/seurat-disk") + (synopsis "Interfaces for HDF5-based single cell file formats") + (description + "The h5Seurat file format is specifically designed for the storage and +analysis of multi-modal single-cell and spatially-resolved expression +experiments, for example, from CITE-seq or 10X Visium technologies. It holds +all molecular information and associated metadata, including (for example) +nearest-neighbor graphs, dimensional reduction information, spatial +coordinates and image data, and cluster labels. This package also supports +rapid and on-disk conversion between h5Seurat and AnnData objects, with the +goal of enhancing interoperability between Seurat and Scanpy.") + (license license:gpl3)))) + (define-public r-phangorn (package (name "r-phangorn") |