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| author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2022-10-30 01:16:04 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-10-31 19:57:53 +0100 |
| commit | 41461b6e22bbad937737d1a5ca4f2826d09a8463 (patch) | |
| tree | 3747e1a10af0d847831e366c88e5724ba3e5c392 | |
| parent | 22c8783dff1f068f46f27f14cd67020f309e06a2 (diff) | |
gnu: Add r-deco.
* gnu/packages/bioconductor.scm (r-deco): New variable.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 42 |
1 files changed, 42 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 9e463457f2..e25c4d0e95 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -3178,6 +3178,48 @@ knowledge can achieve semi-supervised deconvolution of mixtures.") biological sequences.") (license license:gpl3))) +(define-public r-deco + (package + (name "r-deco") + (version "1.12.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "deco" version)) + (sha256 + (base32 + "18n5zgln33c79jbjzjlivs8ihyg8zci6minfqlvagxgzcpa67k0m")))) + (properties `((upstream-name . "deco"))) + (build-system r-build-system) + (propagated-inputs + (list r-ade4 + r-annotationdbi + r-biobase + r-biocparallel + r-biocstyle + r-cluster + r-foreign + r-gdata + r-ggplot2 + r-gplots + r-gridextra + r-limma + r-locfit + r-made4 + r-rcolorbrewer + r-reshape2 + r-scatterplot3d + r-sfsmisc + r-summarizedexperiment)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/fjcamlab/deco") + (synopsis "Decomposing heterogeneous cohorts using omic data profiling") + (description + "This package discovers differential features in hetero- and homogeneous +omic data by a two-step method including subsampling LIMMA and NSCA. DECO +reveals feature associations to hidden subclasses not exclusively related to +higher deregulation levels.") + (license license:gpl3+))) + (define-public r-deconvr (package (name "r-deconvr") |