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| author | Ricardo Wurmus <rekado@elephly.net> | 2024-04-22 15:58:56 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-04-22 16:35:31 +0200 |
| commit | 4a5a23aceb6a6d90c17ee9f9be7da4917b735d2e (patch) | |
| tree | a7148d1e55028743020fd28b104c32876ed78d7d | |
| parent | 81d6fe1672cc2539094851ea7e020e7078a476e9 (diff) | |
gnu: Add savvy.
* gnu/packages/bioinformatics.scm (savvy): New variable.
Change-Id: I48dcfad2c6c769778bd79dffa084332da53991ad
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 37 |
1 files changed, 37 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 7cc193d4b8..d313835249 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -9386,6 +9386,43 @@ viewer.") (delete 'patch-tests) (delete 'configure)))))))) +(define-public savvy + (package + (name "savvy") + (version "2.1.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/statgen/savvy") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "03jh89gl67adnpkwx8yrdn62pd9sg69k21gxh15my2vvpfl1pxlx")))) + (build-system cmake-build-system) + (arguments + (list + #:configure-flags + '(list "-DBUILD_TESTS=ON" + "-DBUILD_EVAL=ON") + #:phases + '(modify-phases %standard-phases + (add-after 'unpack 'use-shared-libraries + (lambda _ + ;; Do not prefer static libraries. + (substitute* "CMakeLists.txt" + (("set\\(CMAKE_FIND_LIBRARY_SUFFIXES \".a;.*") ""))))))) + (native-inputs (list pkg-config)) + (inputs (list htslib)) + (propagated-inputs (list streambuf-shrinkwrap)) + (home-page "https://github.com/statgen/savvy/") + (synopsis "Interface to various variant calling formats") + (description + "Savvy is the official C++ interface for the SAV file format and offers +seamless support for BCF and VCF files.") + (license license:mpl2.0))) + (define-public morpheus (package (name "morpheus") |