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authorRicardo Wurmus <rekado@elephly.net>2021-10-21 11:47:19 +0000
committerRicardo Wurmus <rekado@elephly.net>2021-10-21 12:23:25 +0000
commit57841a91f5917fdf3166c1751abaa2e7beab257f (patch)
tree06d75f58e0e71e88468fed1b80c8e493be97c0db
parent6526c35df5d96a3020fdad8bbe4240ca8b2954ee (diff)
gnu: Add python-bwapy.
* gnu/packages/bioinformatics.scm (python-bwapy): New variable.
-rw-r--r--gnu/packages/bioinformatics.scm26
1 files changed, 26 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index afbacc1c83..139eb3434a 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -106,6 +106,7 @@
#:use-module (gnu packages java-compression)
#:use-module (gnu packages jemalloc)
#:use-module (gnu packages jupyter)
+ #:use-module (gnu packages libffi)
#:use-module (gnu packages linux)
#:use-module (gnu packages logging)
#:use-module (gnu packages lsof)
@@ -15112,6 +15113,31 @@ the @dfn{partial order alignment} (POA) algorithm (as described in
sequences")
(license license:expat)))
+(define-public python-bwapy
+ (package
+ (name "python-bwapy")
+ (version "0.1.4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "bwapy" version))
+ (sha256
+ (base32 "090qwx3vl729zn3a7sksbviyg04kc71gpbm3nd8dalqp673x1npw"))))
+ (build-system python-build-system)
+ (propagated-inputs
+ `(("python-cffi" ,python-cffi)
+ ("python-setuptools" ,python-setuptools)
+ ("python-wheel" ,python-wheel)))
+ (inputs
+ `(("zlib" ,zlib)))
+ (home-page "https://github.com/ACEnglish/bwapy")
+ (synopsis "Python bindings to bwa alinger")
+ (description "This package provides Python bindings to the bwa mem
+aligner.")
+ ;; These Python bindings are licensed under Mozilla Public License 2.0,
+ ;; bwa itself is licenced under GNU General Public License v3.0.
+ (license license:mpl2.0)))
+
(define-public scregseg
(package
(name "scregseg")