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authorMădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>2023-04-21 10:16:37 +0200
committerRicardo Wurmus <rekado@elephly.net>2023-04-21 12:56:38 +0200
commit627049872b500adc2d731758938efa28e1415a49 (patch)
tree531fb68cafbe874456f118a7fcaa1563bfa77c14
parent51ef858c941cd648362a1e98ebeb98bed35cd857 (diff)
gnu: bpp-seq: Update to 2.4.1.
* gnu/packages/bioinformatics.scm (bpp-seq): Update to 2.4.1. [source]: Remove the commit and use the release version. Changed to the github repo. [arguments]: Remove the disabled parallel-build and out-of-source. [home-page]: Changed to new host Université Claude-Bernard Lyon 1.
-rw-r--r--gnu/packages/bioinformatics.scm48
1 files changed, 19 insertions, 29 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 351387fb06..232d0e42c6 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2308,37 +2308,27 @@ library provides population genetics-related modules.")
(license license:cecill-c))))
(define-public bpp-seq
- ;; The last release was in 2014 and the recommended way to install from source
- ;; is to clone the git repository, so we do this.
- ;; http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
- (let ((commit "6cfa07965ce152e5598a89df2fa80a75973bfa33"))
- (package
- (name "bpp-seq")
- (version (string-append "2.2.0-1." (string-take commit 7)))
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "http://biopp.univ-montp2.fr/git/bpp-seq")
- (commit commit)))
- (file-name (string-append name "-" version "-checkout"))
- (sha256
- (base32
- "1nys5jq7jqvdg40d91wsmj3q2yzy4276cp7sp44n67p468f27zf2"))))
- (build-system cmake-build-system)
- (arguments
- `(#:parallel-build? #f
- ;; If out-of-source, test data is not copied into the build directory
- ;; so the tests fail.
- #:out-of-source? #f))
- (inputs
- (list bpp-core))
- (home-page "http://biopp.univ-montp2.fr")
- (synopsis "Bio++ sequence library")
- (description
- "Bio++ is a set of C++ libraries for Bioinformatics, including sequence
+ (package
+ (name "bpp-seq")
+ (version "2.4.1")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/BioPP/bpp-seq")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "1mc09g8jswzsa4wgrfv59jxn15ys3q8s0227p1j838wkphlwn2qk"))))
+ (build-system cmake-build-system)
+ (inputs
+ (list bpp-core))
+ (home-page "https://pbil.univ-lyon1.fr/bpp-doc/bpp-seq/html/")
+ (synopsis "Bio++ sequence library")
+ (description
+ "Bio++ is a set of C++ libraries for Bioinformatics, including sequence
analysis, phylogenetics, molecular evolution and population genetics. This
library provides sequence-related modules.")
- (license license:cecill-c))))
+ (license license:cecill-c)))
(define-public bppsuite
;; The last release was in 2014 and the recommended way to install from source