summaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorRicardo Wurmus <rekado@elephly.net>2023-03-24 17:58:44 +0100
committerRicardo Wurmus <rekado@elephly.net>2023-03-24 18:03:30 +0100
commit6d132c5ebf51205decf75377a33c82c113688b02 (patch)
tree427a9051e7218b2a166cfbc1ec37deddabe0d261
parent33bb60fe0208e1c6167619e1971222d86c48b8dd (diff)
gnu: Add python-scikit-optimize.
* gnu/packages/python-science.scm (python-scikit-optimize): New variable.
-rw-r--r--gnu/packages/python-science.scm66
1 files changed, 47 insertions, 19 deletions
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 073243b63d..e932d6f74c 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -245,33 +245,61 @@ logic, also known as grey logic.")
"Scikit-image is a collection of algorithms for image processing.")
(license license:bsd-3)))
+(define-public python-scikit-optimize
+ (package
+ (name "python-scikit-optimize")
+ (version "0.9.0")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "scikit-optimize" version))
+ (sha256
+ (base32
+ "0230ya8bwrzxjwcy2vz23a3hg6caggnnmg2vq1f9zz2797kckn3p"))))
+ (build-system pyproject-build-system)
+ (propagated-inputs
+ (list python-joblib
+ python-matplotlib
+ python-numpy
+ python-pyaml
+ python-scikit-learn
+ python-scipy))
+ (native-inputs
+ (list python-pytest))
+ (home-page "https://scikit-optimize.github.io/")
+ (synopsis "Sequential model-based optimization toolbox")
+ (description "Scikit-Optimize, or @code{skopt}, is a simple and efficient
+library to minimize (very) expensive and noisy black-box functions. It
+implements several methods for sequential model-based optimization.
+@code{skopt} aims to be accessible and easy to use in many contexts.")
+ (license license:bsd-3)))
+
(define-public python-scikit-allel
(package
(name "python-scikit-allel")
(version "1.3.5")
(source
- (origin
- (method url-fetch)
- (uri (pypi-uri "scikit-allel" version))
- (sha256
- (base32 "1vg88ng6gd175gzk39iz1drxig5l91dyx398w2kbw3w8036zv8gj"))))
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "scikit-allel" version))
+ (sha256
+ (base32 "1vg88ng6gd175gzk39iz1drxig5l91dyx398w2kbw3w8036zv8gj"))))
(build-system python-build-system)
(arguments
(list
- #:phases
- #~(modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- (invoke "python" "setup.py" "build_ext" "--inplace")
- (invoke "python" "-m" "pytest" "-v" "allel"
- ;; AttributeError: 'Dataset' object has no attribute 'asstr'
- "-k" (string-append
- "not test_vcf_to_hdf5"
- " and not test_vcf_to_hdf5_exclude"
- " and not test_vcf_to_hdf5_rename"
- " and not test_vcf_to_hdf5_group"
- " and not test_vcf_to_hdf5_ann"))))))))
+ #:phases
+ #~(modify-phases %standard-phases
+ (replace 'check
+ (lambda* (#:key tests? #:allow-other-keys)
+ (when tests?
+ (invoke "python" "setup.py" "build_ext" "--inplace")
+ (invoke "python" "-m" "pytest" "-v" "allel"
+ ;; AttributeError: 'Dataset' object has no attribute 'asstr'
+ "-k" (string-append
+ "not test_vcf_to_hdf5"
+ " and not test_vcf_to_hdf5_exclude"
+ " and not test_vcf_to_hdf5_rename"
+ " and not test_vcf_to_hdf5_group"
+ " and not test_vcf_to_hdf5_ann"))))))))
(propagated-inputs
(list python-dask
python-numpy))